|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036757 ID=TCONS_00036757|Name=TCONS_00036757|organism=Clytia hemisphaerica|type=transcript|length=1832bp
TAAATACAATAAAGACTGTACTTTcagaaatgttttaaaaatatcataaa
agtTAAACTTTATGTGAAGCATGTGAAAATGATTAATCTGACTCTAAAAT
GTTAGGAAAATTTGTAACATAAGAATATCCACCATCAATATCCAAACATA
AACATTGCTCTGAGATTTCGGTAATACTGATTATACTTAATTTATTTTGA
AGTTGGACTCGCTTTACCAATGGTTTGCTTTCTCCAGgcttaaaacattt
taagaagCTACTTGATGgctgaaatatttgaaaaggcTGAGCATCGAAAT
AATTACCAAAAGCAACATAAAAATCGTTTCCATCATCTGTCTTGAAACAA
GCGAAGCAATTAGTTGAGAAATAATGACCTGTGGTTTGGGAGACAGATAT
GCTATTTCTACGCGTCTCCTTGGTGCGACAGCTTGATCTAATGATGAAGC
CACCAAGCTTAATAGATGGAAATGTAAAAGTAGAAGAATAAATTGTCATA
AAGCGATCGGTAAACAGGGAACTTTCTTCTTTTGAAACAGCATATGGTAA
AAAGGCGTCAAAACCGGTCAGATTTAGATTGATTTTAAAAGTATGTTTAT
GATAAGTTCTCTTCAGCTGCTTGATATACTTATCCTCCTTTGTGCCAGGT
TCAATACAGGTTTCTTCTAGATATGGAAGATGATTAGATGCTGAAACTGC
ACATGCTAGTTGAAATAGAATATTATGTGTGCCATGAATCAGTTTTAAAA
TATAACCATTCTTATCCTCAAAACTAAACAAACTGTATACATAAAGAGGG
CCAAGTTCCAAGACTGTTTGAGGTAGGTGATTCAAGGAATGAATATTGAT
GGTCATGTAGCGACGTGGATATAGCTTGTCAAAAGTggagcaaaacaaaa
aaataaatcttctCGCAGTAACAATATCATCTGGGGTAATTTTTGATTTC
AGTAATAAATGCACTGCATGGACAAGCAAATAAAAGTGTTCAAAATAGAT
GGAGGGTAAAAGGTTTGACATGACGGGAACAAAGTAGTATAATAAAAATG
AACGAAACTCTTAGGCTTTCCAGTAGCCAAGATTACTTTTTATTGTTCGG
GGTGCACATGATATATAATTTGGTGGTTTCAGTGATACCAAACGGTTTTC
AATAGAAGGTAGACTTTGATATACAGAATAAGATTCACTTTTATGAGAGC
CATCAAACCATAAAGACATTATTAGTTTGGTAACTCCTAAAAGAACAGCA
TGCATATAGTCAATTCCCATTCCACGGATAATATCATGTTCTGGTAAAAG
TATTAACGGAGAAGGTCCTTTAACCCCTTTAACATGAACTAAACTGTCAG
AGTTGGCTGATTCAATAGCATGCTTTATAGTACCTGCATGTGTTCTATGT
GGACCAGTTGGATTCGATTCATCAAAAGGAAAAGCTCTAACATTCCCATT
CTTATTTGTCTTCACTGTTTCTCCAGACTGCAGGCATTTTGGACAACCAT
AAAACGAATTGAATTGTTGAAAGTTCAGTGCACTAGCTTTGGCAGGCATA
TCAAGGGTACCACAAAGCAAAATGGATTTTAGAGTAACTTCATCATTAAT
TTTGGTTCCAAAATATGCCAATTCTTTAATTGTCTCAAATTGTGGTGGCA
AAAACAGTAACATGTTTGGATGTGTCTCCCCATACCACAGGCCACTGAtt
aaaatgttttcctttttcctTCGATCTTGAAAGGGCAACTCATTAATGGT
ATAAAACACAGGCCAAATGGAAGATTTAATAGACTTGAACAGCGGTACAC
CATCCGTATTCCACATAAACGAAATATTNTAA Run BLAST on NCBI transcript from alignment at sc0001510:15552..17383+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036757 ID=TCONS_00036757|Name=TCONS_00036757|organism=Clytia hemisphaerica|type=transcript|length=1832bp|location=Sequence derived from alignment at sc0001510:15552..17383+ (Clytia hemisphaerica)
TAAATACAATAAAGACTGTACTTTcagaaatgttttaaaaatatcataaa
agtTAAACTTTATGTGAAGCATGTGAAAATGATTAATCTGACTCTAAAAT
GTTAGGAAAATTTGTAACATAAGAATATCCACCATCAATATCCAAACATA
AACATTGCTCTGAGATTTCGGTAATACTGATTATACTTAATTTATTTTGA
AGTTGGACTCGCTTTACCAATGGTTTGCTTTCTCCAGgcttaaaacattt
taagaagCTACTTGATGgctgaaatatttgaaaaggcTGAGCATCGAAAT
AATTACCAAAAGCAACATAAAAATCGTTTCCATCATCTGTCTTGAAACAA
GCGAAGCAATTAGTTGAGAAATAATGACCTGTGGTTTGGGAGACAGATAT
GCTATTTCTACGCGTCTCCTTGGTGCGACAGCTTGATCTAATGATGAAGC
CACCAAGCTTAATAGATGGAAATGTAAAAGTAGAAGAATAAATTGTCATA
AAGCGATCGGTAAACAGGGAACTTTCTTCTTTTGAAACAGCATATGGTAA
AAAGGCGTCAAAACCGGTCAGATTTAGATTGATTTTAAAAGTATGTTTAT
GATAAGTTCTCTTCAGCTGCTTGATATACTTATCCTCCTTTGTGCCAGGT
TCAATACAGGTTTCTTCTAGATATGGAAGATGATTAGATGCTGAAACTGC
ACATGCTAGTTGAAATAGAATATTATGTGTGCCATGAATCAGTTTTAAAA
TATAACCATTCTTATCCTCAAAACTAAACAAACTGTATACATAAAGAGGG
CCAAGTTCCAAGACTGTTTGAGGTAGGTGATTCAAGGAATGAATATTGAT
GGTCATGTAGCGACGTGGATATAGCTTGTCAAAAGTggagcaaaacaaaa
aaataaatcttctCGCAGTAACAATATCATCTGGGGTAATTTTTGATTTC
AGTAATAAATGCACTGCATGGACAAGCAAATAAAAGTGTTCAAAATAGAT
GGAGGGTAAAAGGTTTGACATGACGGGAACAAAGTAGTATAATAAAAATG
AACGAAACTCTTAGGCTTTCCAGTAGCCAAGATTACTTTTTATTGTTCGG
GGTGCACATGATATATAATTTGGTGGTTTCAGTGATACCAAACGGTTTTC
AATAGAAGGTAGACTTTGATATACAGAATAAGATTCACTTTTATGAGAGC
CATCAAACCATAAAGACATTATTAGTTTGGTAACTCCTAAAAGAACAGCA
TGCATATAGTCAATTCCCATTCCACGGATAATATCATGTTCTGGTAAAAG
TATTAACGGAGAAGGTCCTTTAACCCCTTTAACATGAACTAAACTGTCAG
AGTTGGCTGATTCAATAGCATGCTTTATAGTACCTGCATGTGTTCTATGT
GGACCAGTTGGATTCGATTCATCAAAAGGAAAAGCTCTAACATTCCCATT
CTTATTTGTCTTCACTGTTTCTCCAGACTGCAGGCATTTTGGACAACCAT
AAAACGAATTGAATTGTTGAAAGTTCAGTGCACTAGCTTTGGCAGGCATA
TCAAGGGTACCACAAAGCAAAATGGATTTTAGAGTAACTTCATCATTAAT
TTTGGTTCCAAAATATGCCAATTCTTTAATTGTCTCAAATTGTGGTGGCA
AAAACAGTAACATGTTTGGATGTGTCTCCCCATACCACAGGCCACTGAtt
aaaatgttttcctttttcctTCGATCTTGAAAGGGCAACTCATTAATGGT
ATAAAACACAGGCCAAATGGAAGATTTAATAGACTTGAACAGCGGTACAC
CATCCGTATTCCACATAAACGAAATATTNTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036757-exon-sc0001510-1491911889:15552..17383 | TCONS_00036757-exon-sc0001510-1491911889:15552..17383 | Clytia hemisphaerica | exon |
| TCONS_00036757-exon-sc0001510-1510915933:15552..17383 | TCONS_00036757-exon-sc0001510-1510915933:15552..17383 | Clytia hemisphaerica | exon |
| TCONS_00036757-exon-sc0001510-1575043694:15552..17383 | TCONS_00036757-exon-sc0001510-1575043694:15552..17383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001510 | supercontig | sc0001510:15552..17383 + |
Blast
The following BLAST results are available for this feature:
|
