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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036725 ID=TCONS_00036725|Name=TCONS_00036725|organism=Clytia hemisphaerica|type=transcript|length=4937bpRun BLAST on NCBI protein sequence of TCONS_00036725-protein >TCONS_00036725-protein ID=TCONS_00036725-protein|Name=TCONS_00036725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1065bp MMLHFGFILVVICSICSYNVLGQNTISATICEHAKSAYTMTCSSSQYIVIRun BLAST on NCBI transcript from alignment at sc0001506:22652..39016+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036725 ID=TCONS_00036725|Name=TCONS_00036725|organism=Clytia hemisphaerica|type=transcript|length=16365bp|location=Sequence derived from alignment at sc0001506:22652..39016+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001506:22652..39016+ >TCONS_00036725 ID=TCONS_00036725|Name=TCONS_00036725|organism=Clytia hemisphaerica|type=CDS|length=51168bp|location=Sequence derived from alignment at sc0001506:22652..39016+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00036725 vs. Swiss-Prot (Human)
Match: AGRL3 (Adhesion G protein-coupled receptor L3 OS=Homo sapiens GN=ADGRL3 PE=1 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 1.753e-28 Identity = 129/372 (34.68%), Postives = 199/372 (53.49%), Query Frame = 1
Query: 2089 NQNKTTGSHILSATFDDQKFEN---LLTPINITFK-VSSNAVNVNPNCSFWDETK----DIWSSKG---LTTNSVEDDEKSILCQTTHLTNFALI---IDVSQTRA-NPLALQVITWXXXXXXXXXXXXTVISYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGVERSESETTCQVVAALIQYFLLVSFFWMAAQGINLYKKMVRVLKKHISDSQYFLRSFIVCTVCPXXXXXXXXXXKSEYYGDDNFCLVHGLPFYI-GLVLPICFXXXXXXX-XXXXXXRAIHNTPSNVRASKSIDEETPYMLKLAKITIACSVLLGVTWLFGFLAVGELTEVMQYLFCIFNSLQGFFIFVFYTLTNEEVKKEWANLL 3153
N + S +++A + ++F N L P+ T K + + N NPNCSFW +K WS++G LTTN C HLTNFA++ ++V + A + L L VITW+G +SL L++ + ++ F R + + L ISL V LLFL+G+ R++ C V AAL+ +F L +F WM +G+ LY +V V + S +YF ++V PA+IV VSA+ YG D C + ++I + P II+LN++ L I + + H+T S +D +++ I + C LLG+TW FG + + E T +M YLF IFNSLQG FIF+F+ + ++V+KE+ L
Sbjct: 759 NHSVIVNSPVITAAIN-KEFSNKVYLADPVVFTVKHIKQSEENFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTH-----TTCSCNHLTNFAVLMAHVEVKHSDAVHDLLLDVITWVGILLSLVCLLICIFTF-CFFRGLQSDRNTIHKNLCISLFVAELLFLIGINRTDQPIACAVFAALLHFFFLAAFTWMFLEGVQLYIMLVEVFESEHSRRKYF---YLVGYGMPALIVAVSAAVDYRSYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMFHHTAILKPESGCLDNIKSWVI--GAIALLC--LLGLTWAFGLMYINESTVIMAYLFTIFNSLQGMFIFIFHCVLQKKVRKEYGKCL 1116 The following BLAST results are available for this feature:
BLAST of TCONS_00036725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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