TCONS_00036722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036722
Unique NameTCONS_00036722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036722 ID=TCONS_00036722|Name=TCONS_00036722|organism=Clytia hemisphaerica|type=transcript|length=535bp
gtacaattttgataaaaagtggattttttaaagataaataAATATATACT
AGGAACTGTGAAGGATattcaatgtaaaaatttgttgtgtTGTTATAATG
CTTTAAAATcaataatatatatatattactCTTCAGGTTTATGTTTTCGC
TTGCGTGTTGGAGGTTTTGGAACAGTTACCCGAACTTCTGGTGCAACTCG
GAGGAGATGCTGCTCGACCATGGTCTGTAATCGTTTTTCAGCAGGTTTGT
GAGATGCATATGTTTTTCGAAGACTATTGAACTCTGGATGAATACTCTCC
GCACCTTGTTCCCCATACATACCAAGACCAATACGCCACTTTTTGATGAA
ctttagaatgtgacactcgaGCATATGAAGTTTGATTGTGATTGATTGTT
TAAAGTTATCACGGTAGTGCACAAAGAACTTTTTGATTGCTGTATCTGAA
GAAAAAGACAAGGATCCTGGTAAGTGGAACTTTTACTATACAAATTTCCA
ATATTAATTCCCCTTTTTAAAATCACCAACCAAAG
Run BLAST on NCBI

transcript from alignment at sc0001504:32570..33104

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036722 ID=TCONS_00036722|Name=TCONS_00036722|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at sc0001504:32570..33104 (Clytia hemisphaerica)
CTTTGGTTGGTGATTTTAAAAAGGGGAATTAATATTGGAAATTTGTATAG
TAAAAGTTCCACTTACCAGGATCCTTGTCTTTTTCTTCAGATACAGCAAT
CAAAAAGTTCTTTGTGCACTACCGTGATAACTTTAAACAATCAATCACAA
TCAAACTTCATATGCtcgagtgtcacattctaaagTTCATCAAAAAGTGG
CGTATTGGTCTTGGTATGTATGGGGAACAAGGTGCGGAGAGTATTCATCC
AGAGTTCAATAGTCTTCGAAAAACATATGCATCTCACAAACCTGCTGAAA
AACGATTACAGACCATGGTCGAGCAGCATCTCCTCCGAGTTGCACCAGAA
GTTCGGGTAACTGTTCCAAAACCTCCAACACGCAAGCGAAAACATAAACC
TGAAGagtaatatatatatattattgATTTTAAAGCATTATAACAacaca
acaaatttttacattgaatATCCTTCACAGTTCCTAGTATATATTtattt
atctttaaaaaatccactttttatcaaaattgtac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021689XLOC_021689Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036722-exon-sc0001504-1491911889:32570..33104TCONS_00036722-exon-sc0001504-1491911889:32570..33104Clytia hemisphaericaexon
TCONS_00036722-exon-sc0001504-1510915933:32570..33104TCONS_00036722-exon-sc0001504-1510915933:32570..33104Clytia hemisphaericaexon
TCONS_00036722-exon-sc0001504-1575043694:32570..33104TCONS_00036722-exon-sc0001504-1575043694:32570..33104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001504supercontigsc0001504:32570..33104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.258093	0.152643	0.165391	0.27202	0.191401	0.568753	0.712766	0.840118	0.383837	1.9754	0.892468	0.580105	0.164213	0	0	0.0957562	0	0	0.31287	0.232884	0.231467	0	0	0.148209	0.86006	0.759008	0.335715	0.888122	1.02446	0.294362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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