TCONS_00036700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036700
Unique NameTCONS_00036700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036700 ID=TCONS_00036700|Name=TCONS_00036700|organism=Clytia hemisphaerica|type=transcript|length=523bp
GTTAGAAAGATTCACTTTTGACAAAACTTCTCTCTTTTTGAATTCCTTTc
cttttttgatgaatttttctgCAAATTTTCTGTTTACGAATCTGACAATA
GTACGTTTTGGTccgttttgatttttgttttgagtgagTCGATGACAGGC
TTCAATATCATGTGAAGAGATTGTAATGTCAACAGCTTTAGCGACTTCAA
TAACTTTTTCCTCTAGATCATGTTGTTTAACGTAATCAGGGATACCAGCT
ATTTCAATGTTATTTAGTCTTGTATATTGTTGAAGCTCAGCAGATTCCCT
TTCAAGTTGTATCATGTCATCATTTTTACATAAGTCACttgagatatttt
tcaattcagATTTGAGATCATCAATAATTAAGGACTTTGAATCTAAATCT
TGCCTCAAAGTGTCAATTTCTGCTTTCATAGCTAGGTTTTCGTTTTGAAG
TTTAATGATGATCTCATCCTTAGTATCTTTGATCTTTTCAGCAATGTCAT
GTTTGATAATTCTCATCTCATAA
Run BLAST on NCBI

protein sequence of TCONS_00036700-protein

>TCONS_00036700-protein ID=TCONS_00036700-protein|Name=TCONS_00036700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
YEMRIIKHDIAEKIKDTKDEIIIKLQNENLAMKAEIDTLRQDLDSKSLII
DDLKSELKNISSDLCKNDDMIQLERESAELQQYTRLNNIEIAGIPDYVKQ
HDLEEKVIEVAKAVDITISSHDIEACHRLTQNKNQNGPKRTIVRFVNRKF
AEKFIKKGKEFKKREVLSKVNLSN
Run BLAST on NCBI

transcript from alignment at sc0001500:47192..47714

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036700 ID=TCONS_00036700|Name=TCONS_00036700|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0001500:47192..47714 (Clytia hemisphaerica)
TTATGAGATGAGAATTATCAAACATGACATTGCTGAAAAGATCAAAGATA
CTAAGGATGAGATCATCATTAAACTTCAAAACGAAAACCTAGCTATGAAA
GCAGAAATTGACACTTTGAGGCAAGATTTAGATTCAAAGTCCTTAATTAT
TGATGATCTCAAATctgaattgaaaaatatctcaaGTGACTTATGTAAAA
ATGATGACATGATACAACTTGAAAGGGAATCTGCTGAGCTTCAACAATAT
ACAAGACTAAATAACATTGAAATAGCTGGTATCCCTGATTACGTTAAACA
ACATGATCTAGAGGAAAAAGTTATTGAAGTCGCTAAAGCTGTTGACATTA
CAATCTCTTCACATGATATTGAAGCCTGTCATCGActcactcaaaacaaa
aatcaaaacggACCAAAACGTACTATTGTCAGATTCGTAAACAGAAAATT
TGcagaaaaattcatcaaaaaaggAAAGGAATTCAAAAAGAGAGAAGTTT
TGTCAAAAGTGAATCTTTCTAAC

Coding sequence (CDS) from alignment at sc0001500:47192..47714

>TCONS_00036700 ID=TCONS_00036700|Name=TCONS_00036700|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0001500:47192..47714 (Clytia hemisphaerica)
TATGAGATGAGAATTATCAAACATGACATTGCTGAAAAGATCAAAGATAC
TAAGGATGAGATCATCATTAAACTTCAAAACGAAAACCTAGCTATGAAAG
CAGAAATTGACACTTTGAGGCAAGATTTAGATTCAAAGTCCTTAATTATT
GATGATCTCAAATctgaattgaaaaatatctcaaGTGACTTATGTAAAAA
TGATGACATGATACAACTTGAAAGGGAATCTGCTGAGCTTCAACAATATA
CAAGACTAAATAACATTGAAATAGCTGGTATCCCTGATTACGTTAAACAA
CATGATCTAGAGGAAAAAGTTATTGAAGTCGCTAAAGCTGTTGACATTAC
AATCTCTTCACATGATATTGAAGCCTGTCATCGActcactcaaaacaaaa
atcaaaacggACCAAAACGTACTATTGTCAGATTCGTAAACAGAAAATTT
GcagaaaaattcatcaaaaaaggAAAGGAATTCAAAAAGAGAGAAGTTTT
GTCAAAAGTGAATCTTTCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021674XLOC_021674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036700-exon-sc0001500-1491911889:47192..47714TCONS_00036700-exon-sc0001500-1491911889:47192..47714Clytia hemisphaericaexon
TCONS_00036700-exon-sc0001500-1510915933:47192..47714TCONS_00036700-exon-sc0001500-1510915933:47192..47714Clytia hemisphaericaexon
TCONS_00036700-exon-sc0001500-1575043694:47192..47714TCONS_00036700-exon-sc0001500-1575043694:47192..47714Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036700-proteinTCONS_00036700-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001500supercontigsc0001500:47192..47714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55926	1.15581	0.295287	0.37809	6.94534	4.47061	1.11861	1.95766	0.571269	1.59949	0	0.111979	1.10272	0.702338	0.874433	0.728877	0.721337	2.94529	4.11442	4.15281	2.42122	2.98604	0.716972	0.353334	0.595897	0.541325	0	0.165342	0.501625	0.456956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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