TCONS_00036696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036696
Unique NameTCONS_00036696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036696 ID=TCONS_00036696|Name=TCONS_00036696|organism=Clytia hemisphaerica|type=transcript|length=405bp
GAAGAACCTCCTGTGgtggaagaaaatgaagatgaagaagatgacccgaa
aatgttttttgttgAATACAGGGGAAAATTATCTGAGGAATTGAAACATA
ATCTTGGAAAGTTGAAAGCCCCTTGTCGTGTgatatttactttgaaaaag
tcaaaaacagtGCTACCATCATTGAAGTCCTCCGtggaaaaatccttaaa
aagtgGTGTAGTTTATAAAATTACCAGTCCACGATGTAATTCGTGCTATG
TCGGCCAAACACGGCGACATCTTATCACCCGAATTAAGGAGCACGGTAGG
AAAAACGCACCCGTTACCATTCACATGACGTCATGTCAGCACTCATTAAC
AATGGATGACGTAGCCATTTTGAAAGGTAGTTCTCGTTCGGCAAGCCATT
TAATG
Run BLAST on NCBI

protein sequence of TCONS_00036696-protein

>TCONS_00036696-protein ID=TCONS_00036696-protein|Name=TCONS_00036696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
EEPPVVEENEDEEDDPKMFFVEYRGKLSEELKHNLGKLKAPCRVIFTLKK
SKTVLPSLKSSVEKSLKSGVVYKITSPRCNSCYVGQTRRHLITRIKEHGR
KNAPVTIHMTSCQHSLTMDDVAILKGSSRSASHLM
Run BLAST on NCBI

transcript from alignment at sc0001500:10138..10542

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036696 ID=TCONS_00036696|Name=TCONS_00036696|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at sc0001500:10138..10542 (Clytia hemisphaerica)
CATTAAATGGCTTGCCGAACGAGAACTACCTTTCAAAATGGCTACGTCAT
CCATTGTTAATGAGTGCTGACATGACGTCATGTGAATGGTAACGGGTGCG
TTTTTCCTACCGTGCTCCTTAATTCGGGTGATAAGATGTCGCCGTGTTTG
GCCGACATAGCACGAATTACATCGTGGACTGGTAATTTTATAAACTACAC
cactttttaaggatttttccaCGGAGGACTTCAATGATGGTAGCactgtt
tttgactttttcaaagtaaatatcACACGACAAGGGGCTTTCAACTTTCC
AAGATTATGTTTCAATTCCTCAGATAATTTTCCCCTGTATTcaacaaaaa
acattttcgggtcatcttcttcatcttcattttcttccacCACAGGAGGT
TCTTC

Coding sequence (CDS) from alignment at sc0001500:10138..10542

>TCONS_00036696 ID=TCONS_00036696|Name=TCONS_00036696|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0001500:10138..10542 (Clytia hemisphaerica)
CATTAAATGGCTTGCCGAACGAGAACTACCTTTCAAAATGGCTACGTCAT
CCATTGTTAATGAGTGCTGACATGACGTCATGTGAATGGTAACGGGTGCG
TTTTTCCTACCGTGCTCCTTAATTCGGGTGATAAGATGTCGCCGTGTTTG
GCCGACATAGCACGAATTACATCGTGGACTGGTAATTTTATAAACTACAC
cactttttaaggatttttccaCGGAGGACTTCAATGATGGTAGCactgtt
tttgactttttcaaagtaaatatcACACGACAAGGGGCTTTCAACTTTCC
AAGATTATGTTTCAATTCCTCAGATAATTTTCCCCTGTATTcaacaaaaa
acattttcgggtcatcttcttcatcttcattttcttccacCACAGGAGGT
TCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021670XLOC_021670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036696-exon-sc0001500-1491911889:10138..10542TCONS_00036696-exon-sc0001500-1491911889:10138..10542Clytia hemisphaericaexon
TCONS_00036696-exon-sc0001500-1510915933:10138..10542TCONS_00036696-exon-sc0001500-1510915933:10138..10542Clytia hemisphaericaexon
TCONS_00036696-exon-sc0001500-1575043694:10138..10542TCONS_00036696-exon-sc0001500-1575043694:10138..10542Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036696-proteinTCONS_00036696-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001500supercontigsc0001500:10138..10542 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41538	0.203642	0.934809	1.20306	1.05836	1.04808	1.23373	0.687179	0.81102	0.59401	0.366773	0.636061	0.870927	0.855313	0.302955	0.496477	0	0.278551	0.192416	0.20135	0.582194	1.8484	0	0.861954	0.727162	2.52061	0.854535	0.408732	1.20543	0.604686
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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