TCONS_00036683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036683
Unique NameTCONS_00036683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036683 ID=TCONS_00036683|Name=TCONS_00036683|organism=Clytia hemisphaerica|type=transcript|length=806bp
ATGTAATACAATATAATTTGAATGGAGCCCAAACTGAAGTGGAAACGTGT
TGCCTTTTGTTATTGTGGATGCATTCCAACCAACCCACACATACACTGTC
CATGTCCAGGATGCGAGGACAGAGCTGTCAGTATACGAACAGAATTAAGA
CATAGGAAGCAATATGCTGAGTTCAGTCTCAGCTCTGAACCATGTGTCTC
CGGAGACGAATCACCAAACCAATCATGTGAAGATGAATCAAACCAATCAA
CTCGAGATCAATCAGACCTATCAATTCAAGATGAATCAGACCTATCGATT
CAAGATCAATCAGACCAATCAAGTCAAGATGGAGATCCTCAAGAGCTTGA
AAATCCTGTAACTCATAACGAGTTTGAACAACAACAGCTAGAAGAAGATG
GACATCAACAGGATGAGCAAAGAATTGATGTAGACAATGCATTTGACAAG
TAAGTTTCCAGAAAGGAAGAGTTTGTCTTGTCACATTTGATTAGAACCTT
GTCCTTGGCCTCTGAGATGAATGCATCCACAAATCAAACAAACGAATTAC
TAAGCTATGTTGGTGAGCTGATAAAACTAGAATCTGTGGACGTGAAAAGG
GAATGGCCAACAAGTTCTGCCAGTGCATCGTCAGTTTTGAAACAACTTGG
TCTGCTGTCTGCTCCCACACACCACAAGATATGTTTCAGCAAAGATCATC
CTCAATACTGGTATGCATGTGATGACAAAACATCCTGCCCTGATTGTGAC
AGGCTTCCTGAGATCGACCGATATTATTTGTCTTTGGgggacaaaatgaa
aaagtg
Run BLAST on NCBI

transcript from alignment at sc0001496:39419..41679-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036683 ID=TCONS_00036683|Name=TCONS_00036683|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at sc0001496:39419..41679- (Clytia hemisphaerica)
ATGTAATACAATATAATTTGAATGGAGCCCAAACTGAAGTGGAAACGTGT
TGCCTTTTGTTATTGTGGATGCATTCCAACCAACCCACACATACACTGTC
CATGTCCAGGATGCGAGGACAGAGCTGTCAGTATACGAACAGAATTAAGA
CATAGGAAGCAATATGCTGAGTTCAGTCTCAGCTCTGAACCATGTGTCTC
CGGAGACGAATCACCAAACCAATCATGTGAAGATGAATCAAACCAATCAA
CTCGAGATCAATCAGACCTATCAATTCAAGATGAATCAGACCTATCGATT
CAAGATCAATCAGACCAATCAAGTCAAGATGGAGATCCTCAAGAGCTTGA
AAATCCTGTAACTCATAACGAGTTTGAACAACAACAGCTAGAAGAAGATG
GACATCAACAGGATGAGCAAAGAATTGATGTAGACAATGCATTTGACAAG
TAAGTTTCCAGAAAGTAGGTAAAATTCTAATGGTTCTTTTCAGTGAAATG
TGTATAATCAGTGAAATGTGTATAAGAGCATACAGTAAAATGGAGGTTAA
TGCGGCTCTTTGTCCTTATGCACCTATAAACCCTTACCTTACCACTTTTG
AGGTGACTGGTAATGAAAATACAAGAAAAATTCTTCTCAACAACAGTATC
AAGTGTAGGAAGGCTCTTGTGAAAAAAAATGTAAGATACCTTTGCATGAA
GCGATGAAGTAACGTTGATATACCTTAAGTGGATAAATTTGGCGGGGATT
TAATTTGGCGAATTACCGAATCTGGAAATTTTGGCGGGGATTAAATTTGG
CAAATTTGGCGAATTTTGCCAAAATTCGCCAAATTAAATCCTCGCCAAAA
TTTCCAGATTCGGTAATTCGCCAAATTAAATCCCCGCCAAATTTAACAAA
AAGGGAATTATGTGAAAAATCACAACTTTTTAGCATATTTTTGAGTAATT
TTCACCCATTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCCACTCACGG
CAGTTCACTTGGCAAGTGAACGTTCCTTTGCCCGGGTCAACCCATGCCAT
GTGAGGGGAATTGGGTAGTCAGTTCAAGGTGCTGACGGGAGCTCATTAGT
AAGCATCTATAGTTGCGAGAATAGGCCTCTAAAGCCTCCTGCAACTCAAC
CAAATAGAAATAGAAATATGACCACAGGTAATATCTTTGAATATTTTTTG
CATCATGCAATATTAATTGAAATATGTTTCAGATTGATAACCCTTGGCTT
AGCAGATGACTTTCCTCCACAAATTTTCGGTTATTTAATTCTGGTCTGTA
AATTAAATGGCTACCCCAATAAGTAGCCCAATTGGGGCTACCTTACCTTT
TAGGAATACCAATGATTCTTCTTGATTATTTGGTTTAATCTTATTCAGAC
CATTCATTTCATCTTTTAGGGAAGAGTTTGTCTTGTCACATTTGATTAGA
ACCTTGTCCTTGGCCTCTGAGATGAATGCATCCACAAATCAAACAAACGA
ATTACTAAGCTATGTTGGTGAGCTGATAAAACTAGAATCTGTGGACGTGA
AAAGGGAATGGCCAACAAGTTCTGCCAGTGCATCGTCAGTTTTGAAACAA
CTTGGTCTGCTGTCTGCTCCCACACACCACAAGATATGTTTCAGCAAAGA
TCATCCTCAATACTGGTATGCATGTGATGACAAAACATCCTGCCCTGATT
GTGACAGGCTTCCTGAGATCGACCGATATTATTTGTCTTTGGGGGACAAA
ATGAAAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021658XLOC_021658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036683-exon-sc0001496-1575043694:41216..41679TCONS_00036683-exon-sc0001496-1575043694:41216..41679Clytia hemisphaericaexon
TCONS_00036683-exon-sc0001496-1575043694:39419..39760TCONS_00036683-exon-sc0001496-1575043694:39419..39760Clytia hemisphaericaexon
TCONS_00036683-exon-sc0001496-1510915933:41216..41679TCONS_00036683-exon-sc0001496-1510915933:41216..41679Clytia hemisphaericaexon
TCONS_00036683-exon-sc0001496-1510915933:39419..39760TCONS_00036683-exon-sc0001496-1510915933:39419..39760Clytia hemisphaericaexon
TCONS_00036683-exon-sc0001496-1491911889:41216..41679TCONS_00036683-exon-sc0001496-1491911889:41216..41679Clytia hemisphaericaexon
TCONS_00036683-exon-sc0001496-1491911889:39419..39760TCONS_00036683-exon-sc0001496-1491911889:39419..39760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001496supercontigsc0001496:39419..41679 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.59878	0.971499	0	1.22864	0	0.93134	0	0	0	0	0	0	0.640792	0	0	0	0	0	0	0	0	1.03863	0	0	0.259754	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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