TCONS_00036670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036670
Unique NameTCONS_00036670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036670 ID=TCONS_00036670|Name=TCONS_00036670|organism=Clytia hemisphaerica|type=transcript|length=324bp
CATAGacaagtaaatcaagtaaataaattaaaattaatgaaATGAGAAGT
TTCTATTCTCCTGTTATTTGGAGAGTCACAccctgtgaaaatttcaaagC
TTCCCACATGGTGGTCTTCCGATGGTGCAATTTTCACGTGACAGCTTACG
CAATGTGTTCAATAGGCGATTAATGAGGTCCTTCTCTACGTTTGACCATG
GGGCCTCAAATAAGGAGAAGTAATGAATGGCCAAATTCAATAATTCAAGT
AGGGTTTTCAAATTCCGAGTGTTGGGGAAAACGAAAGCGGACGAAACGAA
GATGAAGTCATTATCAGGTAACGT
Run BLAST on NCBI

transcript from alignment at sc0001493:32431..34829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036670 ID=TCONS_00036670|Name=TCONS_00036670|organism=Clytia hemisphaerica|type=transcript|length=2399bp|location=Sequence derived from alignment at sc0001493:32431..34829- (Clytia hemisphaerica)
CATAGACAAGTAAATCAAGTAAATAAATTAAAATTAATGAAATGAGAAGT
TTCTATTCTCCTGTTATTTGGAGAGTCACACCCTGTGAAAATTTCAAAGG
TAATTTTTTCTTCCGATATTTTCAGTTCTTTCACGAACCTTGCAATAAAA
TTGTAATAACCAGTTCTTGATATTTCTTATACACTTTGGTTTAATTCTTA
GCGTCAAAACGAGGCCAACGACTGACGTAAAAAGTAGAAGTTGTACCAGT
ACGGTTATTAGTATTTACTACTTGCGACAGATTTCTTATGATGTCCTTTT
GAACTCGTTTCTTAACATTTTCAAATTTTACACACGTCGATTCTTTTTTT
CAGCTTCCCACATGGTGGTCTTCCGATGGTGCAATTTTCACGTGACAGCT
TACGCAATGTGTTCAATAGGCGATTAATGAGGTAATATCTTTTCTTGGCA
AAGAAAGGGATGAAAATAAATTTATCCTCTTTGGGTGGTCCACTTGTATG
ATTAATAAGGAAATTTTGCCAACAACAATGAATAGCTTTTGCGGGAGTAT
GGTTACGTTTCCACAATTTAATCGCCTAGCGTGCTTTACTTTCCATTTGA
ATTGGATAAAAAACGGTTATAGAGCGTTCACTCGACTTGCAATCAACTTT
CATCATGATTCTCATCTCCTAGCATTTTTGCTGTGTGTTGGCATTTATTG
CACCATTTTACAAAATATCTTCCGACATTTAACTACGTATCATTTAAAAC
CCGTATGTAATTAATGGACCACACATTGTAGAGTTTTGTCTTTTTCACTA
ATTTACACTAATTGTCATCGTGTGCTTGCCACGTGTTATTTATTATAATG
TTTCAATAAATACCTGAGATGGCACGCCTTGATATGAAAGGGTATAATAT
CGAATTTGATTTCCTAAGCCTATCAACCGTCAATTCTTGAAATAAGTAAG
TCAAGATTAGAGTGAAAGACCTGAAAAAGTGATTTAACCCCTGTTCGCTA
TTTCAGTAACAAACAGGGGTCAAACAATACGCAATCTGGACTTAAAATCT
ATTCATCTGTTATCCATTGTCAAAAACATACAATAAGGCCAATTGGAGAC
TGAGCTTCGGACTAAGAGTTTGTCTTTTTCTCATTATTCGAAGAAAACCT
TTTGGAAGTAAATCTTTTTTAAAGTTTGAACATCCTGGGTGGTACTCACA
GCGATGCGAAGACAAATCAGAAATTACAGGAACTGCTTCTAAAACTGTCT
AGACTATAATTAGCAGAAAATAGAAAAGCCACCAAGGAAGAATAAAAATG
GAAATCTATCTTGAAAATTGCTGCGTCATTATCTCGTTTTACTTTTCTAT
CAGTCTTTATGATTTTATTAATTAGTTTAGAGGTTGATCGATATTCTTTT
GTTTCTCAGTATCGCACTTTCTTTGAGTTTGCCGACCACCTAATTCACTT
GTAATTTTCTTTTAGGTCCTTCTCTACGTTTGACCATGGGGCCTCAAATA
AGGTAAGTGCTCTCGTTAATTCATCATGGATGTGAAACCATGGTTTTCCA
GTTTCGATTAAAAACTTCATTGGCACACCTTTTAAATGGCACTACATTCT
GCGCCTGGTAGAATTAGAAGGATTATAATATATGCTTGTTTTAAGACTTG
GCAGTGTTTTTTTGGAGGTATCTAGTTCATTTTACCAATTTCTATTTAGG
ATTACAGAAAAGAATTTTTTACAATCTTTTTTTTTTATAAGAATGGTGTT
TTTTTATTTCATCATGGATATTCTTAACATTTTGGCGAAAATCATCCAAA
AATATTCTTACGGTATTCTTAGGTTAAGATCGAAATTGGCAATCTACAGG
TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCA
TTCTTAGGTTCAGTTGCTAAATTCCATGATGGTGACATTCTTACCATATT
CTTAATTTTTTGGCCATTTTCATCATGGACATTCTTAAGTGTATTCTTAT
TTTAAAAAAAGCGTGTACTCAATTCTTCTACCTTTGTCTTTGGGAAAGAT
TTTCGTTACTTTGATGGAATAAAACTGTGTAAAAGGACTTTTCGAATTTT
GGGGCTTGATTTCCTGGTTTTAACCCATTGGAAAATTTACCAAAATTTGC
ATTTCTAAATTAAAGATCGAGCTTTTATCCATTGAACAGGAGAAGTAATG
AATGGCCAAATTCAATAATTCAAGTAGGGTTTTCAAATTCCGAGTGTTGG
GGAAAACGAAAGCGGACGAAACGAAGATGAAGTCATTATCAGGTAACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021650XLOC_021650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036670-exon-sc0001493-1575043694:34731..34829TCONS_00036670-exon-sc0001493-1575043694:34731..34829Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1575043694:34399..34476TCONS_00036670-exon-sc0001493-1575043694:34399..34476Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1575043694:33328..33364TCONS_00036670-exon-sc0001493-1575043694:33328..33364Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1575043694:32431..32540TCONS_00036670-exon-sc0001493-1575043694:32431..32540Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1510915933:34731..34829TCONS_00036670-exon-sc0001493-1510915933:34731..34829Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1510915933:34399..34476TCONS_00036670-exon-sc0001493-1510915933:34399..34476Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1510915933:33328..33364TCONS_00036670-exon-sc0001493-1510915933:33328..33364Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1510915933:32431..32540TCONS_00036670-exon-sc0001493-1510915933:32431..32540Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1491911889:34731..34829TCONS_00036670-exon-sc0001493-1491911889:34731..34829Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1491911889:34399..34476TCONS_00036670-exon-sc0001493-1491911889:34399..34476Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1491911889:33328..33364TCONS_00036670-exon-sc0001493-1491911889:33328..33364Clytia hemisphaericaexon
TCONS_00036670-exon-sc0001493-1491911889:32431..32540TCONS_00036670-exon-sc0001493-1491911889:32431..32540Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001493supercontigsc0001493:32431..34829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.658702	1.00841	0	0	0	0	0.7932	0	1.84259	0	0	1.7965	7.18184	8.73551	1.22616	1.59396	0.635902	0.949427	0.327921	0.343146	0.894768	0.577496	3.33565	4.82364	0.331201	17.1939	0	0.451424	3.68256	4.10333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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