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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036669 ID=TCONS_00036669|Name=TCONS_00036669|organism=Clytia hemisphaerica|type=transcript|length=2955bpRun BLAST on NCBI transcript from alignment at sc0001493:12471..19626- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036669 ID=TCONS_00036669|Name=TCONS_00036669|organism=Clytia hemisphaerica|type=transcript|length=7156bp|location=Sequence derived from alignment at sc0001493:12471..19626- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00036669 vs. Swiss-Prot (Human)
Match: BRWD1 (Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4) HSP 1 Score: 193.356 bits (490), Expect = 5.484e-50 Identity = 81/194 (41.75%), Postives = 130/194 (67.01%), Query Frame = 1
Query: 262 EYLSVYAPPEWLSNKDCKKFPYFPQIGDEVYYLKQGHHLYVKKVVQHNEYDIQENRQAYRRYDLSPAELCKLIGIQYDVGPPTMCSLKLELIGKRKSTGNRRTITVRFHDMPNVDDFLVLKHIFEDSLSQGWSVGDRFRCMIDATWYFGTIIEVSPLNEEFITSSFMSLVVRWDNDDEDRVSPWDLEPIPDDTD 843
E+L + PP W+++ +K P+ PQ+GDEV Y +QGH Y++ V ++N Y++ N++ +R+ DL EL K++GI+Y+VGPPT+C LKL I ++ ++R+HDMP+V DFLVL+ ++++ + W DRFR +ID W+FGT++ P ++ S F +VRWDN + +++SPWD+EPIPD+ D
Sbjct: 936 EHLYEFHPPVWITDTTLRKSPFVPQMGDEVIYFRQGHEAYIEAVRRNNIYELNPNKEPWRKMDLRDQELVKIVGIRYEVGPPTLCCLKLAFIDPATGKLMDKSFSIRYHDMPDVIDFLVLRQFYDEARQRNWQSCDRFRSIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDNTEIEKLSPWDMEPIPDNVD 1129 The following BLAST results are available for this feature:
BLAST of TCONS_00036669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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