TCONS_00036665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036665
Unique NameTCONS_00036665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036665 ID=TCONS_00036665|Name=TCONS_00036665|organism=Clytia hemisphaerica|type=transcript|length=396bp
CAGATTTTGATAGTCTTCCTTTTGTTTTGTGGTTGATAAGCCAGGTAAGG
TCCTGATAAGTCGATTTGTGAGTAAAAGAAAGCTGGTGCTATGGTGAGAT
TATATGGTGGAACTGGTCCCATTGCGATTTCGACTGTGCGTTTCATCAGG
TATCTGCACCGTTGAAATGAATCACGAACTTGCTTGACTTTCTGTAGAAC
AAATCGATGAGTTGTTTTGTATGATACAGGAGAGTACCTATCTAAAACAG
ACACACAGAAGTTTGACGAGCTTAAGTCTTTCATGACTTTGGTGAATCTT
CCCACGATTGAGATGCTTTGATCAGGAAGTGTACGACCAGAATACTTGAG
TGTTCCATTTTGTTCTCTTGCGATGTTTTCGTACTTTGATTTGTTG
Run BLAST on NCBI

protein sequence of TCONS_00036665-protein

>TCONS_00036665-protein ID=TCONS_00036665-protein|Name=TCONS_00036665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
NKSKYENIAREQNGTLKYSGRTLPDQSISIVGRFTKVMKDLSSSNFCVSV
LDRYSPVSYKTTHRFVLQKVKQVRDSFQRCRYLMKRTVEIAMGPVPPYNL
TIAPAFFYSQIDLSGPYLAYQPQNKRKTIKI
Run BLAST on NCBI

transcript from alignment at sc0001492:44098..44493

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036665 ID=TCONS_00036665|Name=TCONS_00036665|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at sc0001492:44098..44493 (Clytia hemisphaerica)
CAACAAATCAAAGTACGAAAACATCGCAAGAGAACAAAATGGAACACTCA
AGTATTCTGGTCGTACACTTCCTGATCAAAGCATCTCAATCGTGGGAAGA
TTCACCAAAGTCATGAAAGACTTAAGCTCGTCAAACTTCTGTGTGTCTGT
TTTAGATAGGTACTCTCCTGTATCATACAAAACAACTCATCGATTTGTTC
TACAGAAAGTCAAGCAAGTTCGTGATTCATTTCAACGGTGCAGATACCTG
ATGAAACGCACAGTCGAAATCGCAATGGGACCAGTTCCACCATATAATCT
CACCATAGCACCAGCTTTCTTTTACTCACAAATCGACTTATCAGGACCTT
ACCTGGCTTATCAACCACAAAACAAAAGGAAGACTATCAAAATCTG

Coding sequence (CDS) from alignment at sc0001492:44098..44493

>TCONS_00036665 ID=TCONS_00036665|Name=TCONS_00036665|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0001492:44098..44493 (Clytia hemisphaerica)
AACAAATCAAAGTACGAAAACATCGCAAGAGAACAAAATGGAACACTCAA
GTATTCTGGTCGTACACTTCCTGATCAAAGCATCTCAATCGTGGGAAGAT
TCACCAAAGTCATGAAAGACTTAAGCTCGTCAAACTTCTGTGTGTCTGTT
TTAGATAGGTACTCTCCTGTATCATACAAAACAACTCATCGATTTGTTCT
ACAGAAAGTCAAGCAAGTTCGTGATTCATTTCAACGGTGCAGATACCTGA
TGAAACGCACAGTCGAAATCGCAATGGGACCAGTTCCACCATATAATCTC
ACCATAGCACCAGCTTTCTTTTACTCACAAATCGACTTATCAGGACCTTA
CCTGGCTTATCAACCACAAAACAAAAGGAAGACTATCAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021646XLOC_021646Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036665-proteinTCONS_00036665-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036665-exon-sc0001492-1491911889:44098..44493TCONS_00036665-exon-sc0001492-1491911889:44098..44493Clytia hemisphaericaexon
TCONS_00036665-exon-sc0001492-1510915933:44098..44493TCONS_00036665-exon-sc0001492-1510915933:44098..44493Clytia hemisphaericaexon
TCONS_00036665-exon-sc0001492-1575043694:44098..44493TCONS_00036665-exon-sc0001492-1575043694:44098..44493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001492supercontigsc0001492:44098..44493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.569162	0.216606	0.47643	0	1.27924	1.41523	0.243916	0.685053	0	0.396059	0	0	0	0	0.215459	0.11561	0	0.145978	0	0	0	0	0	0	0.407389	0	0	0.555267	0.210575	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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