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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036660 ID=TCONS_00036660|Name=TCONS_00036660|organism=Clytia hemisphaerica|type=transcript|length=2117bp
GctaaaactaacaaaaacaaTTCACAAGAATTCTGTCTCTATACTGGAGC
AGATACATCCAAACCAGATAATGCACTTCTTCGCTCAGAAGCTGCATTTT
GTGCCGTGCTTGACTGTGCTTGTTCGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCTCTATACTGGAGCAGATACATCCAAACCAGATAATGCACTTC
TTCGCTCAGAAGCTGCATTTTGTGCCGTGCTTGACTGTGCTTGTTCGAGC
ACAGTTTGTGGAACATCCTGGTTTCAGAACTATACTCAAATGCTCAATGA
AgaggagaagaagaaaatcaagcaGTTCACTGGAGGCAGACTGTTCAAGT
TTGGCGGTGGTGAAGTTCTTTCCTCAATTGCCTGTTATGAAATCCCTGCG
TATCTTGCGTATCTTGCGTATCTGAGCAGATCTTCAACAATGGCGATCGA
GTGTTCTACATGCGTGAAGGTTCAAAGAAATGGCTTGGCCCAGCCAaagt
ggtgtttcaagatggcaaAGTGATATTTATTCGTCACGGAGGAATAATGG
TTCGTGTTTCTCCAAATCGTCTCATAAAAGCACCAGAGGATCCAACACTC
ACACCAATGGAAAACAATGCCAAATCGCGTGGAGAAGAATTTGAGCTGCC
AATACAGACACCAATATCAATCATAAACCCTTGGTTGAAGTTTTGTCAAA
ACATGATGGATCCAGATCAAAAACATTCACTGAGGGAGATGTTAGTATCA
ATAAAAGAACCGCCAGAGGTGATAACGATCCACCAAATCCAGACGAATCA
ATAAGACCAGCAACACCAACAACAAGACAAGGACCGTTATTATCTGCGTC
TCCAACAGTTAATGATGCAATCTCAGTTCAATCAGCATTCCAGAAAAAAG
CCACATCATCTCAACAATCGCCTATCATCTCTTCCAAAGCTTCACCTAAA
GATTCTACATCCAAACGTTCATCGAGAAATTCATCAATAACAGCTCCATC
ACCAAAAGATTCAACACGTCAAACTGTGAAATTTCAAGACTCATCCTTAG
AAACATCCACATCAAGAACAAAACAGACAGCAAAGAACCAGACGTTTCCA
AAGAAGGGTGAACCATCTCAATCAAGCAATCATCAGAGTGGCAGTCTGCA
AAGGTAATAAGTCGTGCTGGTAAAGCCAATGGGAAGTTCAAAAGCTGGTT
CAACCTGGAAAGCTCAGAAGACCAATCTCCGATGGCTATTGATTTAGAAA
AATGTGAGTGGAAGCAAATTCATGATGCTCCTGAAGAAGTCAATATTGTT
ATCATACCAAAGAATCAACAACAAACACCTGACTGTGAACGAGCAAAGCT
GGAGGAGATTGAGAAGCTCAAACAATTCAATACCTTTTcagtaccttatt
ggaactaattttcgcgggttttaattttggCGTTTTTCgtggtttttcgt
caaaatcgcgaaaatttgatcccgcgaaaaattttgagagttgaaaaccg
cgaaaattaattcccgcgaaatacaattttttccaattttatcgaaaaat
ttgaaaaatccctaggaaaatgaaggaaatttgtccaaaaaagggcaaaa
ccgcgaaaattaaaacccgcgaaatgcaatttttcggatattttttttcg
accgcgaaaattagttcccgcgaaaattagttccaataaggtagttaAAG
ACGAAGGTCAATTTCGTATATCAACAACATGGGTGTTATGGGAGAAGAAT
GGTGGTGTCTGAGCACGTCTTGTTGCAAGAGGCTGTGAGGAATCATTCAA
AGAAAGGACAGACTCACCCACAGTTTCAAAGAATGTCCTGCGAACATTTC
TGGCAATTGTGCCAAACACGAATTGGGATGTCAAGACAACTGATATCAAA
TCTGCATTTTTGCAAGGAAAAACAATCTCAAGGGAAATACATGTGTCTTC
TCCAAAAGAAACTAAGTTGAAAGGAAAACTTTGGAAACTACAGAAGTGTC
TCTATGGGTTAAACGACGCAGCCCGACAATTCTACGCAAGTGTTGCAGAT
GAGTTAACAAAGCAAGGATGTATACAATCAATTTTGGATCCAGCAGTCTT
CTACTACAAGTTAAANN Run BLAST on NCBI transcript from alignment at sc0001492:103..2219+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036660 ID=TCONS_00036660|Name=TCONS_00036660|organism=Clytia hemisphaerica|type=transcript|length=2117bp|location=Sequence derived from alignment at sc0001492:103..2219+ (Clytia hemisphaerica)
GctaaaactaacaaaaacaaTTCACAAGAATTCTGTCTCTATACTGGAGC
AGATACATCCAAACCAGATAATGCACTTCTTCGCTCAGAAGCTGCATTTT
GTGCCGTGCTTGACTGTGCTTGTTCGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCTCTATACTGGAGCAGATACATCCAAACCAGATAATGCACTTC
TTCGCTCAGAAGCTGCATTTTGTGCCGTGCTTGACTGTGCTTGTTCGAGC
ACAGTTTGTGGAACATCCTGGTTTCAGAACTATACTCAAATGCTCAATGA
AgaggagaagaagaaaatcaagcaGTTCACTGGAGGCAGACTGTTCAAGT
TTGGCGGTGGTGAAGTTCTTTCCTCAATTGCCTGTTATGAAATCCCTGCG
TATCTTGCGTATCTTGCGTATCTGAGCAGATCTTCAACAATGGCGATCGA
GTGTTCTACATGCGTGAAGGTTCAAAGAAATGGCTTGGCCCAGCCAaagt
ggtgtttcaagatggcaaAGTGATATTTATTCGTCACGGAGGAATAATGG
TTCGTGTTTCTCCAAATCGTCTCATAAAAGCACCAGAGGATCCAACACTC
ACACCAATGGAAAACAATGCCAAATCGCGTGGAGAAGAATTTGAGCTGCC
AATACAGACACCAATATCAATCATAAACCCTTGGTTGAAGTTTTGTCAAA
ACATGATGGATCCAGATCAAAAACATTCACTGAGGGAGATGTTAGTATCA
ATAAAAGAACCGCCAGAGGTGATAACGATCCACCAAATCCAGACGAATCA
ATAAGACCAGCAACACCAACAACAAGACAAGGACCGTTATTATCTGCGTC
TCCAACAGTTAATGATGCAATCTCAGTTCAATCAGCATTCCAGAAAAAAG
CCACATCATCTCAACAATCGCCTATCATCTCTTCCAAAGCTTCACCTAAA
GATTCTACATCCAAACGTTCATCGAGAAATTCATCAATAACAGCTCCATC
ACCAAAAGATTCAACACGTCAAACTGTGAAATTTCAAGACTCATCCTTAG
AAACATCCACATCAAGAACAAAACAGACAGCAAAGAACCAGACGTTTCCA
AAGAAGGGTGAACCATCTCAATCAAGCAATCATCAGAGTGGCAGTCTGCA
AAGGTAATAAGTCGTGCTGGTAAAGCCAATGGGAAGTTCAAAAGCTGGTT
CAACCTGGAAAGCTCAGAAGACCAATCTCCGATGGCTATTGATTTAGAAA
AATGTGAGTGGAAGCAAATTCATGATGCTCCTGAAGAAGTCAATATTGTT
ATCATACCAAAGAATCAACAACAAACACCTGACTGTGAACGAGCAAAGCT
GGAGGAGATTGAGAAGCTCAAACAATTCAATACCTTTTcagtaccttatt
ggaactaattttcgcgggttttaattttggCGTTTTTCgtggtttttcgt
caaaatcgcgaaaatttgatcccgcgaaaaattttgagagttgaaaaccg
cgaaaattaattcccgcgaaatacaattttttccaattttatcgaaaaat
ttgaaaaatccctaggaaaatgaaggaaatttgtccaaaaaagggcaaaa
ccgcgaaaattaaaacccgcgaaatgcaatttttcggatattttttttcg
accgcgaaaattagttcccgcgaaaattagttccaataaggtagttaAAG
ACGAAGGTCAATTTCGTATATCAACAACATGGGTGTTATGGGAGAAGAAT
GGTGGTGTCTGAGCACGTCTTGTTGCAAGAGGCTGTGAGGAATCATTCAA
AGAAAGGACAGACTCACCCACAGTTTCAAAGAATGTCCTGCGAACATTTC
TGGCAATTGTGCCAAACACGAATTGGGATGTCAAGACAACTGATATCAAA
TCTGCATTTTTGCAAGGAAAAACAATCTCAAGGGAAATACATGTGTCTTC
TCCAAAAGAAACTAAGTTGAAAGGAAAACTTTGGAAACTACAGAAGTGTC
TCTATGGGTTAAACGACGCAGCCCGACAATTCTACGCAAGTGTTGCAGAT
GAGTTAACAAAGCAAGGATGTATACAATCAATTTTGGATCCAGCAGTCTT
CTACTACAAGTTAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036660-exon-sc0001492-1491911889:103..2219 | TCONS_00036660-exon-sc0001492-1491911889:103..2219 | Clytia hemisphaerica | exon |
| TCONS_00036660-exon-sc0001492-1510915933:103..2219 | TCONS_00036660-exon-sc0001492-1510915933:103..2219 | Clytia hemisphaerica | exon |
| TCONS_00036660-exon-sc0001492-1575043694:103..2219 | TCONS_00036660-exon-sc0001492-1575043694:103..2219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001492 | supercontig | sc0001492:103..2219 + |
Blast
The following BLAST results are available for this feature:
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