TCONS_00036657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036657
Unique NameTCONS_00036657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036657 ID=TCONS_00036657|Name=TCONS_00036657|organism=Clytia hemisphaerica|type=transcript|length=443bp
atttgtcaatctttcgatatgggcgcctgaaaaatccttcttggcgcccc
ttatttttgggcgccccttctcaaaagggctccgctggggggAGCCTGGT
CTCCCTGGCCCCCttgccaccacgccactggttgcaatgtcttctacggA
CTCAACAACTAATTGGtcgcaagtgacgtattgatcgATTTTACGTccca
accaatcagctgtcaagtctgtgatgtaatgtcaaAAGACATTACAACGG
CGCATATCATCAAATGTAATTGTTAACAAATCTTGGTTATGATGAAGTAT
TTCTCTCATTTTCAGGTCGCTTGATCTTGACATCAACAAAGACAACATAT
AAATTATGAATTTGGATTATGTCACGCAAAGCTCATCACGAATCGAATGA
ACAGGCAAGCGAAATACATCAGATATGAGGCACATGTACTTNN
Run BLAST on NCBI

transcript from alignment at sc0001491:4429..4871

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036657 ID=TCONS_00036657|Name=TCONS_00036657|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0001491:4429..4871 (Clytia hemisphaerica)
NNAAGTACATGTGCCTCATATCTGATGTATTTCGCTTGCCTGTTCATTCG
ATTCGTGATGAGCTTTGCGTGACATAATCCAAATTCATAATTTATATGTT
GTCTTTGTTGATGTCAAGATCAAGCGACCTGAAAATGAGAGAAATACTTC
ATCATAACCAAGATTTGTTAACAATTACATTTGATGATATGCGCCGTTGT
AATGTCTTttgacattacatcacagacttgacagctgattggttgggACG
TAAAATcgatcaatacgtcacttgcgaCCAATTAGTTGTTGAGTccgtag
aagacattgcaaccagtggcgtggtggcaaGGGGGCCAGGGAGACCAGGC
Tccccccagcggagcccttttgagaaggggcgcccaaaaataaggggcgc
caagaaggatttttcaggcgcccatatcgaaagattgacaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021639XLOC_021639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036657-exon-sc0001491-1491911889:4429..4871TCONS_00036657-exon-sc0001491-1491911889:4429..4871Clytia hemisphaericaexon
TCONS_00036657-exon-sc0001491-1510915933:4429..4871TCONS_00036657-exon-sc0001491-1510915933:4429..4871Clytia hemisphaericaexon
TCONS_00036657-exon-sc0001491-1575043694:4429..4871TCONS_00036657-exon-sc0001491-1575043694:4429..4871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001491supercontigsc0001491:4429..4871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.32907	3.65701	4.07362	3.20765	0.644139	0.706853	0.584772	1.36773	0.595443	0.334713	0.153606	0.531583	0.530471	0.861609	0.7122	0.660616	1.60662	0.12037	0.813061	0.341967	0.597457	0	2.80072	1.66411	1.74293	4.44011	1.5665	0.460617	1.28316	1.407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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