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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036648 ID=TCONS_00036648|Name=TCONS_00036648|organism=Clytia hemisphaerica|type=transcript|length=1171bp
CAATGGTCTCCTATTGTGAATACAAAGACTCAGGATGCTACTTTAAGGGC
ACCAAATTACAACTGGACAATCATATGGCACAATCGGCCAACATGCATTT
GTCTCTTGAAATGAAAAgtgagattttcaaaataaaaaaagaattcgaTC
AAAGGTTGACAGCGAAAGATTTTGAAGctcaacaaatgaaaaatgaattt
gctGAACAGTTGAAAATGAGGGATAATGAAATCGGAAAAGTCCGGTTGGA
TCTTGATCGAGACTTGAAAGCAAAAGACAAATTGATTCATGCATTAGCGG
AGCGATTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCGACGAAATGGAA
ATCAAAGTTCAGATGAACCAAACTGCCATCAAGTCCTTGGAGAAAAAATT
GCTGACGAAGTTGAAAACAACCGATAAAtctctttttgatttgaaagaag
AATTTATGCTGACTAAGCAGGAAGTTGAAAAAGACAAAGAACGGAATCAA
AAAGACGATCTTTTTAAAGGATCGGGTAGAGGTTTAGCTGTAAAAGAGGA
ATTAAATTTGGCTATCTGCGCACCATCACTATGTAACTATACATGGACCA
TCGAAAATTTCAAAGAGAAATTTGACGCTGCTACGAAATGGAATGAGTAT
AATTCACCATATTTTTTACTAAGCATGGTTATAAAGGATGTATTTTCTCC
AGGTTTCGCATGACCAATCAAGACAACAAAAACACTTATGTATCAATTTT
CTTTAATAATGAGGAGGGTCCTCATGACGATACTTTAGAATGGCCAATGC
CTTGGAAATCATTGATTTTCACTTTGATATTTAATGGAGTTGAAATTGCT
CAAACTGTGAGAAGAAGTAAAGATGAAGGAGGTAGATGGAAAGATTCATT
TGAAAGACCAGTTGGTTACTGTGCTTACCGGCTTGGAAATCCGTCAGCAT
TTGAGCACGGCTTATTCAAGAACATAACTATGAATGATAGTGTTGCAATA
AGATTTGGAATGAATTAATCTTCTAGTCCTTAATTGGTGTAAATGTCGTT
ATATATTACGTTTTCGTCTTCTTTTTAGAGTAAATGTATGAAGAGTTTAT
AAAGATTAGAAATACGGGGgcgttggaaaattttcaaatttagttCGAAA
ACCTCgaacaaagaccaaaac Run BLAST on NCBI protein sequence of TCONS_00036648-protein >TCONS_00036648-protein ID=TCONS_00036648-protein|Name=TCONS_00036648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MVSYCEYKDSGCYFKGTKLQLDNHMAQSANMHLSLEMKSEIFKIKKEFDQ
RLTAKDFEAQQMKNEFAEQLKMRDNEIGKVRLDLDRDLKAKDKLIHALAE
RLKIAEEKLKGVDEMEIKVQMNQTAIKSLEKKLLTKLKTTDKSLFDLKEE
FMLTKQEVEKDKERNQKDDLFKGSGRGLAVKEELNLAICAPSLCNYTWTI
ENFKEKFDAATKWNEYNSPYFLLSMVIKDVFSPGFA Run BLAST on NCBI transcript from alignment at sc0001491:13753..19228+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036648 ID=TCONS_00036648|Name=TCONS_00036648|organism=Clytia hemisphaerica|type=transcript|length=5476bp|location=Sequence derived from alignment at sc0001491:13753..19228+ (Clytia hemisphaerica)
CAATGGTCTCCTATTGTGAATACAAAGACTCAGGATGCTACTTTAAGGTA
AATTTTTCTTATGTTAAAGCGTGTGTTAAAGCtgcttttttcaatttcca
aaggaatgaaatgaaaatttccgaATAATTCGAGAGACGAACTAAGCTGG
ACGGCTAAAAAGGACTCTGCAAGGAGTCTTTCGTGGATAAAGTGTTAGCt
ttattttgtcttatttttcaAAGTAGCTGTACCGCAGCACTATCcggatt
tttgtcattttggcccGTTTGAGTGTTAAGGGAACGTTTGGATTGTTTAA
AGTAAGTACGGTAAAGTATAGAGgttaaaaaactgttatattatTTAAAA
AGCTAAGATTCTTTAAATTGATTGGTTTCAGGGCACCAAATTACAACTGG
ACAATCATATGGCACAATCGGCCAACATGCATTTGTCTCTTGAAATGAAA
CGtgagattttcaaaatgaaaaaagaattcgATCAAAAGTTGACAGCGAA
AGATCTCGAAATtcaacaaatgaaaaatgaattcgTTGAACAGTTGAAAG
AAAGGGATAACGAAATCGGGAAATCCGAACTTGGTCAggtcttgaaaaca
aaagaccAAATTATTAAAGCTAATGACAATGGTTCTGTGTGGGTAATCCG
TCAGCATTTGAGCACGGCTTATTCAAGGACATAACTATGAATGATAGTGT
TGCAATAAGATTTGTAATGAATTAATTTTCTAGTCATTAATTGGTGCAAA
TGTCATTATATATTACGTTTTCGTCTTCTTTTTAGAGTAAATGTATGAAG
AGTTTATAAAGATTAGAAATACGGGGGCGttggaaaatttccaaatttag
TTTGAAAACCTCgaacaaagaccaaaacaacgtctaGTCTGTCCAAatct
tctgacgactggacggCAGATGAAGATTAGACAATAtttaataaattcta
aaattatttcgtagataattaattaataattctatgaataaataAAGTAA
AATGAATGAATATGGAATGCAATCATTAATGCttatatgaaaatttgaat
aatttcttgaaactgttcataagaacaatgaattaacaattcgcaaaaaa
taaataaccttcctgatttttcgattttatgcTCAAATTGCTGATCTAAA
TGATAGCGTATTATGGGGTGATTCTCGAGAAAAACGTGTGTTTTTAGGGC
GAAAGGTTCTATAGTGTTATTATAAAGGAACTATCACTCTTACCTAAGTA
GTTTCATTTTTCTAAGGAATGCTGTctttaaatctttaaatttcaaggcC
ATTGATTTGTCTATATTCTGTTTTTTGATAGATCTTTTTGTTCAAGAGgt
attttgaaagtgatagtaTCGAGATATGAGCTTACTGTAGCATGCTATAG
TTTTGGAGAGGGACGAGAAacggaaaattattttaatctaATCCTGTAAC
TATTTGTGAAAAGTTCGATCTTGGTTgctgaaagttagatttttaaACAA
TATGGCAGCTTGTAAACCAGAAGAGTATGGTTTTGATGTGACGTTCATAT
GGGAAgacgaaaaatctgaaataCCTCAAACAACAGAAGAAAATTCTGTA
CAGAACGCCAAAGAAATCAACAGAGACGATATCACTTGTGCAATATGCCT
TTTGGTTTTGCGAGAACCAGTACAAGCCGTGAAATGCGGGCATCGATTTT
GCGAAAAATGTATTGGGGAATTTCATCTTCAGAAGTAAGTGCGAACAGTA
GCCAGTTCACGTCgaaattttctatatttttgttAGTCGTCATTTTCTTG
TGTTCTATAAAAAGTTTTCGTTAAGCAAAGAATCTACAGCTCAAATTAAT
TGCATTGGAGAATTATTTATGTTAATCATTTTATTCTAGTCCGGGAAAAT
GCCCCAAAGATTGGCAAGAGATTCAAGTGTTTCCTGATgtgggaaaaaaa
agagaaatactCAGTTTGAAGATTCGATGTCCGAATTTTGTTGATGGATG
TACGTGGCAAAATGAGCTCAGAGAGAAAGAGGTTTGTAGGCATTATTTCA
TTTAATATCATCTGTACGCAGAAAGAAGACGTTTTCGAAAGTGGGGATGG
CTGTTCTAGAAAAACGCTAAAAAACTACAGCAAATTTCTGATTTTGGGAT
CTGGCACTATGTTAAAATCATAAGACCCTCCACTTTACTAAATTGGATGC
TTTAAGTTATGCTCTCATTAGGACCAATTTATGAAGTGAAACCATATCGC
CTTGAAGGGAGGGGGGAATCTACTTGATGATATTTATAATGATTTtgatt
tatacaaaaatttaaaaaggggAAGAGCCTAGAGGTAGAGGAGGCTGATC
TATATTTGAGGTAGCAACCCCCTTCCATACATAAGCTTTAGgccaatttt
cttatttagggAGTCAATTTCTTTTGCAATAGATAATAACAAGCATTTAT
CATCGTTTTAGGTTCACCtgaaaacttgtggatttgTGACTGTTCCTTGT
GAATTAGATTGTGGAGAATTCGTGCTCCGTAAAAACGTAAGAACGATTTG
TTATCATTTGTAAGATATCAGAGAGGCCTGGAAAAATACGAGTTAAAGGA
CCTTAAAAAACCTCGGGTCATAACTCTGGTTTTCTTAACCCGGGTTTTGC
AGACCTCGATATGTGAATACAAACCATGAAAACACTCGGGATAACTTTTT
GTGAGGCCCTGAAAACCGGAGTTCGGCAAACCCTAGTTACCTATTTTCAT
AACTTGAGAGAAATGGCGTCATTTTAGAAGATAACTTGATTTATGATAAT
AGCTCGATTTGTTTGTGGTTACCTTAATCGTTCGAGTTAGTTAACTCGGT
TGTTATGAAAATATGAgttatgaaaatttgttttctgGAATCTTTTAACC
CAGTCTTTTTGGTGTATGTTTTTGAGTTTGTTAACTCGGATTTTCAAGAG
GCCCGAAAGAGCTGATGTTGAAAAACTCGAAATATTTTACTAAGAGGGAG
TTTTAGTAGTCTATGAATCTGTAAAGGTGCCCTCTTATGCAAATGAAACA
TTTGCTTCAAAAACGACAGTGGAAATCTCATCTTAtgattctcaacttca
gttgagttacaatctgacaatgtctgagtgtgtgtgtctgtctgtctgtc
acaaaaactttagggcagcctggagacttcaaaaatgcttggatttggct
gaaatttggcacacttgttccttgggtgaatatctgggttttttttcttc
attttttgaaaattttgatttttggggcctggggacgagtttttcgccaa
aacgaggctaaaactttggggcaacctggagacttcaaaaattgttcatt
ttggctgaaattttgcacacttgttccttggctgaatatctggggttcta
caattgggcatatgaatagtttgaaggcactgaagttgagccctgTGCGT
TgtgcacgttcgactattcTACAATTATAGACATATTATTTTAGCTTATG
GATTCTTCTTTAGATAACAAATCACGTGGATACCGTATGTCCAATGGTCT
CCTCTTGTGAATACAAAGACTCAGGATGCTACTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAATTGTTcattttgac
tgaaattttgcacacttgttccttggctgaatatctggggttctacaatt
gggcctatgaaggcactgaagttgagcccagtgcgcgTGTTCGACTATTC
TACAATTGTAGACATATTATTTTAGCTTATGGGTTCTTCTTTAGATAACA
AATCACGTGGATACCGTATGTCCAATGGTCTCCTCTTGTGAATACAAAGA
CTTAGGATGCTACTTTAAGGTACATTTTTCTTATGTTGAAGCtgcttttt
tcaatttccaaaggaatgaaataaaaatttccgaATAAATCGAGAGACGA
ACTAAGCTGGCTAACTACAAAAGACTCTGCAAGGAGTCTTTCGTGGATAA
AGTGCTACAGTATCtttattttgtcttatttttcaAAGTAGCTGTACTCT
CCGGATTTTTTGTCATCTAAGTAAGTACAGTAAAGTATATAGGTAATAAG
CCAGATATATTATTTGAAAAGCTAACGCAGTTTCTAAATTGTTGCGTTTC
AGGGCACCAAATTACAACTGGACAATCATATGGCACAATCGGCCAACATG
CATTTGTCTCTTGAAATGAAAAgtgagattttcaaaataaaaaaagaatt
cgaTCAAAGGTTGACAGCGAAAGATTTTGAAGctcaacaaatgaaaaatg
aatttgctGAACAGTTGAAAATGAGGGATAATGAAATCGGAAAAGTCCGG
TTGGATCTTGATCGAGACTTGAAAGCAAAAGACAAATTGATTCATGCATT
AGCGGAGCGATTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCGACGAAA
TGGAAATCAAAGTTCAGATGAACCAAACTGCCATCAAGTCCTTGGAGAAA
AAATTGCTGACGAAGTTGAAAACAACCGATAAAtctctttttgatttgaa
agaagAATTTATGCTGACTAAGCAGGAAGTTGAAAAAGACAAAGAACGGA
ATCAAAAAGACGATCTTTTTAAAGGATCGGGTAGAGGTTTAGCTGTAAAA
GAGGAATTAAATTTGGCTATCTGCGCACCATCACTATGTAACTATACATG
GACCATCGAAAATTTCAAAGAGAAATTTGACGCTGCTACGAAATGGAATG
AGTATAATTCACCATATTTTTTACTAAGCATGGTTATAAAGGATGTATTT
TCTCCAGGTTTCGCATGACCAATCAAGACAACAAAAACACTTATGTATCA
ATTTTCTTTAATAATGAGGAGGGTCCTCATGACGATACTTTAGAATGGCC
AATGCCTTGGAAATCATTGATTTTCACTTTGATATTTAATGGAGTTGAAA
TTGCTCAAACTGTGAGAAGAAGTAAAGATGAAGGAGGTAGATGGAAAGAT
TCATTTGAAAGACCAGTTGGTTACTGTGCTTACCGGCTTGGAAATCCGTC
AGCATTTGAGCACGGCTTATTCAAGAACATAACTATGAATGATAGTGTTG
CAATAAGATTTGGAATGAATTAATCTTCTAGTCCTTAATTGGTGTAAATG
TCGTTATATATTACGTTTTCGTCTTCTTTTTAGAGTAAATGTATGAAGAG
TTTATAAAGATTAGAAATACGGGGgcgttggaaaattttcaaatttagtt
CGAAAACCTCgaacaaagaccaaaac Coding sequence (CDS) from alignment at sc0001491:13753..19228+ >TCONS_00036648 ID=TCONS_00036648|Name=TCONS_00036648|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0001491:13753..19228+ (Clytia hemisphaerica)
ATGGTCTCCTATTGTGAATACAAAGACTCAGGATGCTACTTTAAGGGCAC
CAAATTACAACTGGACAATCATATGGCACAATCGGCCAACATGCATTTGT
CTCTTGAAATGAAAAgtgagattttcaaaataaaaaaagaattcgaTCAA
AGGTTGACAGCGAAAGATTTTGAAGctcaacaaatgaaaaatgaatttgc
tGAACAGTTGAAAATGAGGGATAATGAAATCGGAAAAGTCCGGTTGGATC
TTGATCGAGACTTGAAAGCAAAAGACAAATTGATTCATGCATTAGCGGAG
CGATTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCGACGAAATGGAAAT
CAAAGTTCAGATGAACCAAACTGCCATCAAGTCCTTGGAGAAAAAATTGC
TGACGAAGTTGAAAACAACCGATAAAtctctttttgatttgaaagaagAA
TTTATGCTGACTAAGCAGGAAGTTGAAAAAGACAAAGAACGGAATCAAAA
AGACGATCTTTTTAAAGGATCGGGTAGAGGTTTAGCTGTAAAAGAGGAAT
TAAATTTGGCTATCTGCGCACCATCACTATGTAACTATACATGGACCATC
GAAAATTTCAAAGAGAAATTTGACGCTGCTACGAAATGGAATGAGTATAA
TTCACCATATTTTTTACTAAGCATGGTTATAAAGGATGTATTTTCTCCAG
GTTTCGCATGAATGGTCTCCTATTGTGAATACAAAGACTCAGGATGCTAC
TTTAAGGGCACCAAATTACAACTGGACAATCATATGGCACAATCGGCCAA
CATGCATTTGTCTCTTGAAATGAAAAgtgagattttcaaaataaaaaaag
aattcgaTCAAAGGTTGACAGCGAAAGATTTTGAAGctcaacaaatgaaa
aatgaatttgctGAACAGTTGAAAATGAGGGATAATGAAATCGGAAAAGT
CCGGTTGGATCTTGATCGAGACTTGAAAGCAAAAGACAAATTGATTCATG
CATTAGCGGAGCGATTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCGAC
GAAATGGAAATCAAAGTTCAGATGAACCAAACTGCCATCAAGTCCTTGGA
GAAAAAATTGCTGACGAAGTTGAAAACAACCGATAAAtctctttttgatt
tgaaagaagAATTTATGCTGACTAAGCAGGAAGTTGAAAAAGACAAAGAA
CGGAATCAAAAAGACGATCTTTTTAAAGGATCGGGTAGAGGTTTAGCTGT
AAAAGAGGAATTAAATTTGGCTATCTGCGCACCATCACTATGTAACTATA
CATGGACCATCGAAAATTTCAAAGAGAAATTTGACGCTGCTACGAAATGG
AATGAGTATAATTCACCATATTTTTTACTAAGCATGGTTATAAAGGATGT
ATTTTCTCCAGGTTTCGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036648-exon-sc0001491-1491911889:13753..13799 | TCONS_00036648-exon-sc0001491-1491911889:13753..13799 | Clytia hemisphaerica | exon |
| TCONS_00036648-exon-sc0001491-1510915933:13753..13799 | TCONS_00036648-exon-sc0001491-1510915933:13753..13799 | Clytia hemisphaerica | exon |
| TCONS_00036648-exon-sc0001491-1575043694:13753..13799 | TCONS_00036648-exon-sc0001491-1575043694:13753..13799 | Clytia hemisphaerica | exon |
| TCONS_00036648-exon-sc0001491-1491911889:18105..19228 | TCONS_00036648-exon-sc0001491-1491911889:18105..19228 | Clytia hemisphaerica | exon |
| TCONS_00036648-exon-sc0001491-1510915933:18105..19228 | TCONS_00036648-exon-sc0001491-1510915933:18105..19228 | Clytia hemisphaerica | exon |
| TCONS_00036648-exon-sc0001491-1575043694:18105..19228 | TCONS_00036648-exon-sc0001491-1575043694:18105..19228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001491 | supercontig | sc0001491:13753..19228 + |
Blast
The following BLAST results are available for this feature:
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