TCONS_00036583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036583
Unique NameTCONS_00036583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036583 ID=TCONS_00036583|Name=TCONS_00036583|organism=Clytia hemisphaerica|type=transcript|length=358bp
TTGTGATGGCAAGTGGCTTGAGGCAGCTATAGAAATACTGGACAACAACA
ACATCAACGTGTTTTCTTTTGCTCAGGCAATGAGGGAATGTATCATCGTT
GGACGTGCAAaacattttaacgtttttcttcATGGACCGAAAAATTGCGG
AAAGTCTTTTTTATTGAACCCATTGGAGGACATTTTTAGATGTTTCATGA
ACCCCGCCGAGGGGAAGTATTGCTGGGTGGGTTTGGATGATTGTGAGGTT
GCTGTGTTACAGGACCTAAGATGGTCACCCAACCTCATCAAATGGAGTGA
TTTTTTGGTTTTACTCGATGGACAAACTGTACACTTGGCTCGCCCGAAAA
ATGTCTAT
Run BLAST on NCBI

protein sequence of TCONS_00036583-protein

>TCONS_00036583-protein ID=TCONS_00036583-protein|Name=TCONS_00036583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
CDGKWLEAAIEILDNNNINVFSFAQAMRECIIVGRAKHFNVFLHGPKNCG
KSFLLNPLEDIFRCFMNPAEGKYCWVGLDDCEVAVLQDLRWSPNLIKWSD
FLVLLDGQTVHLARPKNVY
Run BLAST on NCBI

transcript from alignment at sc0001481:42529..42886

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036583 ID=TCONS_00036583|Name=TCONS_00036583|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0001481:42529..42886 (Clytia hemisphaerica)
ATAGACATTTTTCGGGCGAGCCAAGTGTACAGTTTGTCCATCGAGTAAAA
CCAAAAAATCACTCCATTTGATGAGGTTGGGTGACCATCTTAGGTCCTGT
AACACAGCAACCTCACAATCATCCAAACCCACCCAGCAATACTTCCCCTC
GGCGGGGTTCATGAAACATCTAAAAATGTCCTCCAATGGGTTCAATAAAA
AAGACTTTCCGCAATTTTTCGGTCCATgaagaaaaacgttaaaatgttTT
GCACGTCCAACGATGATACATTCCCTCATTGCCTGAGCAAAAGAAAACAC
GTTGATGTTGTTGTTGTCCAGTATTTCTATAGCTGCCTCAAGCCACTTGC
CATCACAA

Coding sequence (CDS) from alignment at sc0001481:42529..42886

>TCONS_00036583 ID=TCONS_00036583|Name=TCONS_00036583|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0001481:42529..42886 (Clytia hemisphaerica)
ATAGACATTTTTCGGGCGAGCCAAGTGTACAGTTTGTCCATCGAGTAAAA
CCAAAAAATCACTCCATTTGATGAGGTTGGGTGACCATCTTAGGTCCTGT
AACACAGCAACCTCACAATCATCCAAACCCACCCAGCAATACTTCCCCTC
GGCGGGGTTCATGAAACATCTAAAAATGTCCTCCAATGGGTTCAATAAAA
AAGACTTTCCGCAATTTTTCGGTCCATgaagaaaaacgttaaaatgttTT
GCACGTCCAACGATGATACATTCCCTCATTGCCTGAGCAAAAGAAAACAC
GTTGATGTTGTTGTTGTCCAGTATTTCTATAGCTGCCTCAAGCCACTTGC
CATCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021590XLOC_021590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036583-exon-sc0001481-1491911889:42529..42886TCONS_00036583-exon-sc0001481-1491911889:42529..42886Clytia hemisphaericaexon
TCONS_00036583-exon-sc0001481-1510915933:42529..42886TCONS_00036583-exon-sc0001481-1510915933:42529..42886Clytia hemisphaericaexon
TCONS_00036583-exon-sc0001481-1575043694:42529..42886TCONS_00036583-exon-sc0001481-1575043694:42529..42886Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036583-proteinTCONS_00036583-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001481supercontigsc0001481:42529..42886 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.464381	0.269595	0.263757	19.9081	15.2242	5.81632	6.30494	4.01294	3.47947	0.482466	4.44016	2.21699	0.32891	1.35204	1.88623	2.85992	0.916039	1.01245	1.05945	0	1.34748	0.546014	0.744609	5.62415	6.38836	0.65298	1.39376	0.792836	0.269258
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001177DNA_helicase_E1_C_Papillomavir
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0004003ATP-dependent DNA helicase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
molecular_function GO:0005524 ATP binding
molecular_function GO:0004003 ATP-dependent DNA helicase activity
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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