TCONS_00036564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036564
Unique NameTCONS_00036564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036564 ID=TCONS_00036564|Name=TCONS_00036564|organism=Clytia hemisphaerica|type=transcript|length=591bp
GTATAATATTGTCTGAAATGTCGTCTGGAGAAAATGAAAGTGTTTTGATT
AAAGAGTTCTTTGAAAGGTTGTTATTCGAAtcagctcaaaataatttaaa
tttttcaattacATTAGAAACCGAAACACAAAACACCTTTTATTGAAAcg
aattacttttttataaagGAGCATTTAAAGTTAGCATTTTTTTATGCACC
TTATTTCATTTAGGCTCAAACTCTCAAAACTCTGCGAAAATTATCTTGAA
GTAAAGTCTTCAAAACacttagggaaaaaagaaagtgACTGAGTAGTTTT
TTGAGAGNACTCTCAAAACTCTGCGAATATTATCTTGAAGTAAAGTCTTC
AAAACacttagggaaaaaagaaagtgACTGAGTAGTTTTCTGAgaacttt
tgaagaaatagtattttcttactttttaagGAATTCAAACAATaccttaa
taaaaaaaataacaaaagataagCAGTATATATGTACATTTAGAAAATAA
CACTTCTTTGATAATAATCTAGATAAATTATTCTATTTTATATCACTCTA
TGAAATTCTCATTTATAAACGAAAAAGGAAATCAAAGTTAA
Run BLAST on NCBI

transcript from alignment at sc0001480:26064..26654

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036564 ID=TCONS_00036564|Name=TCONS_00036564|organism=Clytia hemisphaerica|type=transcript|length=591bp|location=Sequence derived from alignment at sc0001480:26064..26654 (Clytia hemisphaerica)
TTAACTTTGATTTCCTTTTTCGTTTATAAATGAGAATTTCATAGAGTGAT
ATAAAATAGAATAATTTATCTAGATTATTATCAAAGAAGTGTTATTTTCT
AAATGTACATATATACTGcttatcttttgttattttttttattaaggtAT
TGTTTGAATTCcttaaaaagtaagaaaatactatttcttcaaaagttcTC
AGAAAACTACTCAGTcactttcttttttccctaagtGTTTTGAAGACTTT
ACTTCAAGATAATATTCGCAGAGTTTTGAGAGTNCTCTCAAAAAACTACT
CAGTcactttcttttttccctaagtGTTTTGAAGACTTTACTTCAAGATA
ATTTTCGCAGAGTTTTGAGAGTTTGAGCCTAAATGAAATAAGGTGCATAA
AAAAATGCTAACTTTAAATGCTCctttataaaaaagtaattcgTTTCAAT
AAAAGGTGTTTTGTGTTTCGGTTTCTAATgtaattgaaaaatttaaatta
ttttgagctgaTTCGAATAACAACCTTTCAAAGAACTCTTTAATCAAAAC
ACTTTCATTTTCTCCAGACGACATTTCAGACAATATTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021573XLOC_021573Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036564-exon-sc0001480-1491911889:26064..26654TCONS_00036564-exon-sc0001480-1491911889:26064..26654Clytia hemisphaericaexon
TCONS_00036564-exon-sc0001480-1510915933:26064..26654TCONS_00036564-exon-sc0001480-1510915933:26064..26654Clytia hemisphaericaexon
TCONS_00036564-exon-sc0001480-1575043694:26064..26654TCONS_00036564-exon-sc0001480-1575043694:26064..26654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001480supercontigsc0001480:26064..26654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.181133	0	0	0.125245	0.0989705	0	0.111784	0.0782629	0.193882	0	0.123707	0.308837	0.064146	0	0.169784	0	0	0	0.10331	0.359182	0.656987	0.319461	0.387249	0	0	0.254696	0.135909	0.103083	0.105025
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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