TCONS_00036561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036561
Unique NameTCONS_00036561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036561 ID=TCONS_00036561|Name=TCONS_00036561|organism=Clytia hemisphaerica|type=transcript|length=406bp
ATTgtagaaaaacttttaactGAATCCTTTGCTCGATTATAAGTCTTGTT
GCAATCGGTGAAGTAAATTCATTTGGATTTCCAATGAAAAGTATATCGAT
ACATTACGCTTCAGAATGACAGACTTTATCGGTGGCTTGAAATCTCAAAA
CTTCACTTCAAACATATACAAAATTTAAACTCTAATttaaatgtaataaa
aataaacGTGTACAATGTAGTCCAGAAACTGGAGCTCGACTACTTATTTC
GTATGTGAGGCTCTAATACAGACTCGGCAAGAATGGGATGGATATTGAGA
TGGGAGATTCGGCAGATTTTTTAGAACATATTAgcttttttatctttgaa
atgAAAGATGTTACAATAAAGATATAATGTACTGTATGTAGTAGATTTTG
TCAATT
Run BLAST on NCBI

transcript from alignment at sc0001480:5303..5708

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036561 ID=TCONS_00036561|Name=TCONS_00036561|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at sc0001480:5303..5708 (Clytia hemisphaerica)
AATTGACAAAATCTACTACATACAGTACATTATATCTTTATTGTAACATC
TTTcatttcaaagataaaaaagcTAATATGTTCTAAAAAATCTGCCGAAT
CTCCCATCTCAATATCCATCCCATTCTTGCCGAGTCTGTATTAGAGCCTC
ACATACGAAATAAGTAGTCGAGCTCCAGTTTCTGGACTACATTGTACACg
tttatttttattacatttaaATTAGAGTTTAAATTTTGTATATGTTTGAA
GTGAAGTTTTGAGATTTCAAGCCACCGATAAAGTCTGTCATTCTGAAGCG
TAATGTATCGATATACTTTTCATTGGAAATCCAAATGAATTTACTTCACC
GATTGCAACAAGACTTATAATCGAGCAAAGGATTCagttaaaagtttttc
tacAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021570XLOC_021570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036561-exon-sc0001480-1491911889:5303..5708TCONS_00036561-exon-sc0001480-1491911889:5303..5708Clytia hemisphaericaexon
TCONS_00036561-exon-sc0001480-1510915933:5303..5708TCONS_00036561-exon-sc0001480-1510915933:5303..5708Clytia hemisphaericaexon
TCONS_00036561-exon-sc0001480-1575043694:5303..5708TCONS_00036561-exon-sc0001480-1575043694:5303..5708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001480supercontigsc0001480:5303..5708 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.256417	0	0	2.91434	1.40329	1.6312	1.81448	0.367443	0.537009	0	0.513983	2.66996	1.30976	0.437486	0.239922	0.215341	0.709342	6.12386	7.08591	1.41554	0.843306	0.620816	0.766619	0	0.234833	0.394923	0	0.199886	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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