TCONS_00036559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036559
Unique NameTCONS_00036559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036559 ID=TCONS_00036559|Name=TCONS_00036559|organism=Clytia hemisphaerica|type=transcript|length=553bp
CTGAGCTCGATCTGCATGATATTCAACTACTGTCTCGTCACGGGAACTCA
ACCCGTTCAGTGGAAGAAGAATAGAACTACTCTGATTCTCAAAAAGCCGG
ACGGACTCGATGATGCTTCCAACTGGAGANGTCACGGGAACTCAACCCGT
TCAGTGGAAGAAGAATAGAACTACTCTGATTCCCAAAAAGCCGGACGGAC
TCGATGATGCTTCCAACTGGAGACCGATTACGATTAGTAGTGTCATTGCG
AGACTTCTCCATCGGATCCTCGCTAAACGCCTAACTCAGGCGCTTCATCT
CAATCCCAGACAGAAGGCTTTCCTTCCCATGGATGGTATTGCTCAAAACA
CTTTTATCCTTGACTCAGTAATTCAGAAAGCCAGGAAGAGTCGCTCTACC
TTATCCATTGTCGGGATGGATCTGAGTAAAGCATTTGACTCGGTATCTCA
CCATAGTCTGACCAGAGCACTTCGACGGCACAAGGTAGAAGAACAGATGA
TCGACTATATCATCAACACATACACTGGCGCCACAACGAACATCTCATGC
GGA
Run BLAST on NCBI

protein sequence of TCONS_00036559-protein

>TCONS_00036559-protein ID=TCONS_00036559-protein|Name=TCONS_00036559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MMLPTGXVTGTQPVQWKKNRTTLIPKKPDGLDDASNWRPITISSVIARLL
HRILAKRLTQALHLNPRQKAFLPMDGIAQNTFILDSVIQKARKSRSTLSI
VGMDLSKAFDSVSHHSLTRALRRHKVEEQMIDYIINTYTGATTNISCG
Run BLAST on NCBI

transcript from alignment at sc0001479:57429..57981

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036559 ID=TCONS_00036559|Name=TCONS_00036559|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at sc0001479:57429..57981 (Clytia hemisphaerica)
TCCGCATGAGATGTTCGTTGTGGCGCCAGTGTATGTGTTGATGATATAGT
CGATCATCTGTTCTTCTACCTTGTGCCGTCGAAGTGCTCTGGTCAGACTA
TGGTGAGATACCGAGTCAAATGCTTTACTCAGATCCATCCCGACAATGGA
TAAGGTAGAGCGACTCTTCCTGGCTTTCTGAATTACTGAGTCAAGGATAA
AAGTGTTTTGAGCAATACCATCCATGGGAAGGAAAGCCTTCTGTCTGGGA
TTGAGATGAAGCGCCTGAGTTAGGCGTTTAGCGAGGATCCGATGGAGAAG
TCTCGCAATGACACTACTAATCGTAATCGGTCTCCAGTTGGAAGCATCAT
CGAGTCCGTCCGGCTTTTTGGGAATCAGAGTAGTTCTATTCTTCTTCCAC
TGAACGGGTTGAGTTCCCGTGACNTCTCCAGTTGGAAGCATCATCGAGTC
CGTCCGGCTTTTTGAGAATCAGAGTAGTTCTATTCTTCTTCCACTGAACG
GGTTGAGTTCCCGTGACGAGACAGTAGTTGAATATCATGCAGATCGAGCT
CAG

Coding sequence (CDS) from alignment at sc0001479:57429..57981

>TCONS_00036559 ID=TCONS_00036559|Name=TCONS_00036559|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0001479:57429..57981 (Clytia hemisphaerica)
TCCGCATGAGATGTTCGTTGTGGCGCCAGTGTATGTGTTGATGATATAGT
CGATCATCTGTTCTTCTACCTTGTGCCGTCGAAGTGCTCTGGTCAGACTA
TGGTGAGATACCGAGTCAAATGCTTTACTCAGATCCATCCCGACAATGGA
TAAGGTAGAGCGACTCTTCCTGGCTTTCTGAATTACTGAGTCAAGGATAA
AAGTGTTTTGAGCAATACCATCCATGGGAAGGAAAGCCTTCTGTCTGGGA
TTGAGATGAAGCGCCTGAGTTAGGCGTTTAGCGAGGATCCGATGGAGAAG
TCTCGCAATGACACTACTAATCGTAATCGGTCTCCAGTTGGAAGCATCAT
CGAGTCCGTCCGGCTTTTTGGGAATCAGAGTAGTTCTATTCTTCTTCCAC
TGAACGGGTTGAGTTCCCGTGACNTCTCCAGTTGGAAGCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021568XLOC_021568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036559-exon-sc0001479-1491911889:57429..57981TCONS_00036559-exon-sc0001479-1491911889:57429..57981Clytia hemisphaericaexon
TCONS_00036559-exon-sc0001479-1510915933:57429..57981TCONS_00036559-exon-sc0001479-1510915933:57429..57981Clytia hemisphaericaexon
TCONS_00036559-exon-sc0001479-1575043694:57429..57981TCONS_00036559-exon-sc0001479-1575043694:57429..57981Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036559-proteinTCONS_00036559-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001479supercontigsc0001479:57429..57981 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.39427	4.2872	3.76095	1.71317	0.588206	0.398838	0.330159	1.75644	0.143616	0.255645	0	0.068686	0.274362	0.521141	0	0	0	0	0	0	0	0	0.599876	1.29014	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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