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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036555 ID=TCONS_00036555|Name=TCONS_00036555|organism=Clytia hemisphaerica|type=transcript|length=2639bp
CTTGCAGTCTGACAAAAACTTTTGCACTGAAATAGTCGAACAATGAACGT
GAAAAAATTAAcaacaatttctttaattttgttttggtttgaaaCCCAAA
TCATAATCATTGCTTCAAGGAGATTCGAAATTGTTGGACGGAATAAAATA
CCAAAGAAAACACCTTACTCGACAGTTGATGTCAAATTTGAGCAACATTG
TTTCTCAAAATGTCATCATGTGATAAAATGCTTCTCTTTTCTCGTCCAGA
GAACAAGCAACGCAATGCCAATTCGTTGTCATTTTTATAACAGCACAACC
ACTGGTTTGACTGACAGCCAAGCAACAGAAGATAACACAATATTATACAC
AGCTCAGATTCAGGATTGTCTGGATCTATACAACTCAGGCCACAAGAGCT
CTGGTGTTTACTCCATAAATCTTCTTGGTAAAGGTCAAAGAGATATCAGA
TGTGATATGGAAATTGAAGGTGGTGGTTGGACTGTGATACTTTACCGAAC
GACTAGTCAATATAATTGGAATGTTGGATGGAATCAATATAAAAACGGTA
TTGTTGAAACTACTGGTGATTTTTATCTTGGAAAGGAACTTGATTCTGGT
CAATATGAACTGTatttcagaacacaaatagacGTTGCTAATTCACCTGC
AAACGCAGATAACACATATTTTGGCTGGCACGGAAATTTTCATGTTGCAA
ATGAAGCAGATTACTATCGCCTGACAGTAGGTGACATCAAACCAGGGTCA
CAACCCCAAATCAATGATTTGAACGGGATGCAATTCACAACAACTGACAT
GGAAAGAGATAATTACCACCATAATTGTGCAACCTTCAAATTATCTGCAT
TTTGGTGGAATGGTTGTGGTAGAATACAACCATTTGGTGTTTATTTACAT
TCAGATTCTCAAAAATGTATGGGAATTAATGTTAGTGGTGTAGGAAGGTT
ATGCACTTTGAACTTTCAAATGCTGGTACGACGAAAATAAAGAGACATAA
CAGGAATCATTTGGGAATAAAAACTATTGATTACTGACTTGCACCGCAAT
GACTGTGTTCGGATCCGGAGCACTTACAGACAGGGTGTTAGGGTGTTAGG
GAAGGATTCTTTCAGTGAGAAACTAATGGTATAATGTGTCAACTCTTATt
cattttttgactattttagTGTTATTTCAGAGAAATTAATTTTAAACAAT
tatttcgggaaatgcatccTTGCAATGTATTCTAACATTACGTCAGTTTT
TATACGAAATTGGTTGCACGATTGGTGTCGTATtgagcaggggggggggt
cagtgtaccagaaggtggcatgtatcctggggtgggtgggtgtttgagaa
aaaaatttgtcatgtactacatgtgtactataattggggtgttgggtcca
aaatcgattttgacttttactacctgtgtaccaaaatagaggTGTTGACA
Gtatggaaacaaaaaggttcagaaattatctgctaaaatagaaaaaaaaa
tgttgctAAAATGTAAATGTagttgttctattataaattgatcaagccaa
gtttgtccaagatcattcttccaaacttcttgtcggaatgaattgaaatc
ctaccagatcccactgaaatgaaggtttatcgagtcaatgtaaacattcg
aacattcaAATTCGAGGAACATTTGAACAtcagaggtgccaactctcacg
catggGGTGTGAGACTCGCgcatttccacatggtctcacgcaatttttga
aaagtttgatttctcacgcattttggatttttgagaaaaattctcctgtt
tttccaatttttggaaaaacgttttcccgatttcccgagtttccgaaaaa
aagtttcccgatttcccgatttttgtaaaaatgtttacccgattttccga
ttttttccaGGTAGTACCCAGTAGTAAatggggggtatggggtggtttgg
GTTTTTTTCCAAGTACTACCCGGTAGTAaatagggggtatggggtggttt
tcggatttttctatgtagtatggtgtacttcaggggtgagtgggtgtcaa
gttttgaaaaataccttgtagtacacatacatgccgcCTTCTAGTACACT
GACCCCTCCTGTATTGAGTAGTACATAATTTATAATGTTTGAAGTCAtta
caatgggctcttccaggaaaaatccgttcatggggggtggaggatgaatt
gtccaggggtattgaaaaaataccaaaaaatcgcaatgtccagggggtaa
attccaatgtccagggataattttttgtgtccacggggttgatttgatgt
ttgtccaggggtatagcCCGTGTCCAGGggattaaaaatcaaaatgtcca
ggggtaattcatgaaaaaaataatatatcctccaccccccatgaatggat
tttttctggaagagcccaatggtGAATATCATGAACATGAAGATGAAACA
TTTGATAAGAATGAATATTCATTTAACACGGTATATAATTCATTACTTAT
ATtaaattaaagtaaaaatttaaactttgTTGATGTTTATCGCAAGTGGT
CGTTAACTAGGTGGACATTATTGGTGTAAATTTGTATATAATGAACAATG
GCAATATATGttaaattaagaaaaatatttaaaaataac Run BLAST on NCBI protein sequence of TCONS_00036555-protein >TCONS_00036555-protein ID=TCONS_00036555-protein|Name=TCONS_00036555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MNVKKLTTISLILFWFETQIIIIASRRFEIVGRNKIPKKTPYSTVDVKFE
QHCFSKCHHVIKCFSFLVQRTSNAMPIRCHFYNSTTTGLTDSQATEDNTI
LYTAQIQDCLDLYNSGHKSSGVYSINLLGKGQRDIRCDMEIEGGGWTVIL
YRTTSQYNWNVGWNQYKNGIVETTGDFYLGKELDSGQYELYFRTQIDVAN
SPANADNTYFGWHGNFHVANEADYYRLTVGDIKPGSQPQINDLNGMQFTT
TDMERDNYHHNCATFKLSAFWWNGCGRIQPFGVYLHSDSQKCMGINVSGV
GRLCTLNFQMLVRRK Run BLAST on NCBI transcript from alignment at sc0001479:23967..26605 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036555 ID=TCONS_00036555|Name=TCONS_00036555|organism=Clytia hemisphaerica|type=transcript|length=2639bp|location=Sequence derived from alignment at sc0001479:23967..26605 (Clytia hemisphaerica)
gttatttttaaatatttttcttaatttaaCATATATTGCCATTGTTCATT
ATATACAAATTTACACCAATAATGTCCACCTAGTTAACGACCACTTGCGA
TAAACATCAAcaaagtttaaatttttactttaatttaATATAAGTAATGA
ATTATATACCGTGTTAAATGAATATTCATTCTTATCAAATGTTTCATCTT
CATGTTCATGATATTCaccattgggctcttccagaaaaaatccattcatg
gggggtggaggatatattatttttttcatgaattacccctggacattttg
atttttaatccCCTGGACACGGgctatacccctggacaaacatcaaatca
accccgtggacacaaaaaattatccctggacattggaatttaccccctgg
acattgcgattttttggtattttttcaatacccctggacaattcatcctc
caccccccatgaacggatttttcctggaagagcccattgtaaTGACTTCA
AACATTATAAATTATGTACTACTCAATACAGGAGGGGTCAGTGTACTAGA
AGgcggcatgtatgtgtactacaaggtatttttcaaaacttgacacccac
tcacccctgaagtacaccatactacatagaaaaatccgaaaaccacccca
taccccctattTACTACCGGGTAGTACTTGGAAAAAAACccaaaccaccc
cataccccccatTTACTACTGGGTACTACCtggaaaaaatcggaaaatcg
ggtaaacatttttacaaaaatcgggaaatcgggaaactttttttcggaaa
ctcgggaaatcgggaaaacgtttttccaaaaattggaaaaacaggagaat
ttttctcaaaaatccaaaatgcgtgagaaatcaaacttttcaaaaattgc
gtgagaccatgtggaaatgcGCGAGTCTCACACCccatgcgtgagagttg
gcacctctgaTGTTCAAATGTTCCTCGAATTtgaatgttcgaatgtttac
attgactcgataaaccttcatttcagtgggatctggtaggatttcaattc
attccgacaagaagtttggaagaatgatcttggacaaacttggcttgatc
aatttataatagaacaactACATTTACATTTTagcaacatttttttttct
attttagcagataatttctgaacctttttgtttccataCTGTCAACAcct
ctattttggtacacaggtagtaaaagtcaaaatcgattttggacccaaca
ccccaattatagtacacatgtagtacatgacaaatttttttctcaaacac
ccacccaccccaggatacatgccaccttctggtacactgacccccccccc
tgctcaATACGACACCAATCGTGCAACCAATTTCGTATAAAAACTGACGT
AATGTTAGAATACATTGCAAggatgcatttcccgaaataATTGTTTAAAA
TTAATTTCTCTGAAATAACActaaaatagtcaaaaaatgaATAAGAGTTG
ACACATTATACCATTAGTTTCTCACTGAAAGAATCCTTCCCTAACACCCT
AACACCCTGTCTGTAAGTGCTCCGGATCCGAACACAGTCATTGCGGTGCA
AGTCAGTAATCAATAGTTTTTATTCCCAAATGATTCCTGTTATGTCTCTT
TATTTTCGTCGTACCAGCATTTGAAAGTTCAAAGTGCATAACCTTCCTAC
ACCACTAACATTAATTCCCATACATTTTTGAGAATCTGAATGTAAATAAA
CACCAAATGGTTGTATTCTACCACAACCATTCCACCAAAATGCAGATAAT
TTGAAGGTTGCACAATTATGGTGGTAATTATCTCTTTCCATGTCAGTTGT
TGTGAATTGCATCCCGTTCAAATCATTGATTTGGGGTTGTGACCCTGGTT
TGATGTCACCTACTGTCAGGCGATAGTAATCTGCTTCATTTGCAACATGA
AAATTTCCGTGCCAGCCAAAATATGTGTTATCTGCGTTTGCAGGTGAATT
AGCAACgtctatttgtgttctgaaatACAGTTCATATTGACCAGAATCAA
GTTCCTTTCCAAGATAAAAATCACCAGTAGTTTCAACAATACCGTTTTTA
TATTGATTCCATCCAACATTCCAATTATATTGACTAGTCGTTCGGTAAAG
TATCACAGTCCAACCACCACCTTCAATTTCCATATCACATCTGATATCTC
TTTGACCTTTACCAAGAAGATTTATGGAGTAAACACCAGAGCTCTTGTGG
CCTGAGTTGTATAGATCCAGACAATCCTGAATCTGAGCTGTGTATAATAT
TGTGTTATCTTCTGTTGCTTGGCTGTCAGTCAAACCAGTGGTTGTGCTGT
TATAAAAATGACAACGAATTGGCATTGCGTTGCTTGTTCTCTGGACGAGA
AAAGAGAAGCATTTTATCACATGATGACATTTTGAGAAACAATGTTGCTC
AAATTTGACATCAACTGTCGAGTAAGGTGTTTTCTTTGGTATTTTATTCC
GTCCAACAATTTCGAATCTCCTTGAAGCAATGATTATGATTTGGGtttca
aaccaaaacaaaattaaagaaattgttgTTAATTTTTTCACGTTCATTGT
TCGACTATTTCAGTGCAAAAGTTTTTGTCAGACTGCAAG Coding sequence (CDS) from alignment at sc0001479:23967..26605 >TCONS_00036555 ID=TCONS_00036555|Name=TCONS_00036555|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at sc0001479:23967..26605 (Clytia hemisphaerica)
TTATTTTCGTCGTACCAGCATTTGAAAGTTCAAAGTGCATAACCTTCCTA
CACCACTAACATTAATTCCCATACATTTTTGAGAATCTGAATGTAAATAA
ACACCAAATGGTTGTATTCTACCACAACCATTCCACCAAAATGCAGATAA
TTTGAAGGTTGCACAATTATGGTGGTAATTATCTCTTTCCATGTCAGTTG
TTGTGAATTGCATCCCGTTCAAATCATTGATTTGGGGTTGTGACCCTGGT
TTGATGTCACCTACTGTCAGGCGATAGTAATCTGCTTCATTTGCAACATG
AAAATTTCCGTGCCAGCCAAAATATGTGTTATCTGCGTTTGCAGGTGAAT
TAGCAACgtctatttgtgttctgaaatACAGTTCATATTGACCAGAATCA
AGTTCCTTTCCAAGATAAAAATCACCAGTAGTTTCAACAATACCGTTTTT
ATATTGATTCCATCCAACATTCCAATTATATTGACTAGTCGTTCGGTAAA
GTATCACAGTCCAACCACCACCTTCAATTTCCATATCACATCTGATATCT
CTTTGACCTTTACCAAGAAGATTTATGGAGTAAACACCAGAGCTCTTGTG
GCCTGAGTTGTATAGATCCAGACAATCCTGAATCTGAGCTGTGTATAATA
TTGTGTTATCTTCTGTTGCTTGGCTGTCAGTCAAACCAGTGGTTGTGCTG
TTATAAAAATGACAACGAATTGGCATTGCGTTGCTTGTTCTCTGGACGAG
AAAAGAGAAGCATTTTATCACATGATGACATTTTGAGAAACAATGTTGCT
CAAATTTGACATCAACTGTCGAGTAAGGTGTTTTCTTTGGTATTTTATTC
CGTCCAACAATTTCGAATCTCCTTGAAGCAATGATTATGATTTGGGtttc
aaaccaaaacaaaattaaagaaattgttgTTAATTTTTTCACGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036555-exon-sc0001479-1491911889:23967..26605 | TCONS_00036555-exon-sc0001479-1491911889:23967..26605 | Clytia hemisphaerica | exon |
| TCONS_00036555-exon-sc0001479-1510915933:23967..26605 | TCONS_00036555-exon-sc0001479-1510915933:23967..26605 | Clytia hemisphaerica | exon |
| TCONS_00036555-exon-sc0001479-1575043694:23967..26605 | TCONS_00036555-exon-sc0001479-1575043694:23967..26605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001479 | supercontig | sc0001479:23967..26605 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00036555 vs. Swiss-Prot (Human)
Match: FGL1 (Fibrinogen-like protein 1 OS=Homo sapiens GN=FGL1 PE=1 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 1.631e-20 Identity = 66/208 (31.73%), Postives = 105/208 (50.48%), Query Frame = 1
Query: 328 EDNTIL---YTAQIQDCLDLYNSGHKSSGVYSIN-LLGKGQRDIRCDMEIEGGGWTVILYRTTSQYNWNVGWNQYKNG---IVETTGDFYLG-KELDSGQYELYFRTQIDVANSPANADNTYFGWHGNFHVANEADYYRLTVGD--------IKPGSQPQIN---DLNGMQFTTTDMERDNYHHNCATFKLSAFWWNGCGRIQPFGVY 894
++NT++ Q DC +++N G+K SG Y I L + + CDM +GGGWTVI R+ N+N GW Y+NG V+ G+++LG K L + + +ID+A+ N+ + + NF V +E ++Y L +G+ + P++ M+F+T D + DNY NCA S +W+N C GVY
Sbjct: 67 DENTVIDLGSKRQYADCSEIFNDGYKLSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRGWKDYENGFGNFVQKHGEYWLGNKNLHFLTTQEDYTLKIDLADFEK---NSRYAQYKNFKVGDEKNFYELNIGEYSGTAGDSLAGNFHPEVQWWASHQRMKFSTWDRDHDNYEGNCAEEDQSGWWFNRCHSANLNGVY 270
The following BLAST results are available for this feature:
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