TCONS_00036551 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036551
Unique Name	TCONS_00036551
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	673

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001479:30650..33535+
coding sequence from alignment at sc0001479:30650..33535+

transcript sequence

>TCONS_00036551 ID=TCONS_00036551|Name=TCONS_00036551|organism=Clytia hemisphaerica|type=transcript|length=673bp
AATAGATCCATTTACaacttataaaaaatacaatcAATATTAAACTAAAT
GAGTAACAACATATTATCAGATTTGAAACTTCCCGAGCCAGACGTTCGAT
TGGTGGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGATGCCGTAAT
GCTCAAATCACTGGTGAAACGAGCCAGGAAAGCATGAAATTCTGGAAGAA
AAACAAGATTCAAAACGACATAAAGCGGGCCATGAAGTACATATTAAGTG
GATCGAACAAGATTGAACCCATACGCACAGATGAACTCGTCATTTATCCA
TACAAGCGTGAATGGCCGAACGCGTCTAAATTTGAATTCACTCGTGAGGG
AGACACCTTAAACTGTTCACAAGATCTATATATGTTTTACATTGAACGTA
TTGAAGATAAACAAACACCAACAACACCAGTCACCATGAGAGCTCAAACG
CGTGAAGAACAAATTGTATTGGTCGTGGATGAAAAGACACCTGTTAATTC
ACCAGCTCAGAGAAGTATAGTTAGCACACGAAATTCAGGAAAGGTATAGC
AACAGAATATTCAATTTATAATTTTGCAGGATTGTTATCAGTTTGTCGAT
GGAAAGGTTCCTTTAATAAACTTTTAGTAATATGGGGTGACTCAAAAAAC
TTTGGATTTCTGACGAACTTTTG

Run BLAST on NCBI

protein sequence of TCONS_00036551-protein

>TCONS_00036551-protein ID=TCONS_00036551-protein|Name=TCONS_00036551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MSNNILSDLKLPEPDVRLVVYNQTIVKVKLRCRNAQITGETSQESMKFWK
KNKIQNDIKRAMKYILSGSNKIEPIRTDELVIYPYKREWPNASKFEFTRE
GDTLNCSQDLYMFYIERIEDKQTPTTPVTMRAQTREEQIVLVVDEKTPVN
SPAQRSIVSTRNSGKV

Run BLAST on NCBI

transcript from alignment at sc0001479:30650..33535+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036551 ID=TCONS_00036551|Name=TCONS_00036551|organism=Clytia hemisphaerica|type=transcript|length=2886bp|location=Sequence derived from alignment at sc0001479:30650..33535+ (Clytia hemisphaerica)
AATAGATCCATTTACaacttataaaaaatacaatcAATATTAAACTAAAT
GAGTAACAACATATTATCAGATTTGAAACTTCCCGAGCCAGACGTTCGAT
TGGTGGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGATGCCGTAAT
GCTCAAATCACTGGTGAAACGAGCCAGGAAAGGtacttatatattttttg
atgatttgggtttgacttaatttcgcgaattattCATTATTGGTGAGCTT
TTATGTGAAACTGTGTTGATCGTTTTGGATATTTGCATTATTAACTCTTT
TTCTCTTGACAGTTCATCATAATGACCTTTTGGCAAAATTGCTTTGGAAT
AAAAAACACCCACTTGAGACTGGGAAGTTTTATCGTGGTTGAAGTTTTAT
GAAATTGcattttggaactaatttttgtacATATAACAACATGGACTACC
CTCCAGCCCtttgttttaaagatttttctttccattttaCAGCATGAAAT
TCTGGAAGAAAAACAAGATTCAAAACGACATAAAGGTATCGAATACTAGa
gtccattcgctttaagtgtgcactgaACCTTTGTTTGGCTTGTCAAATGT
TTCAACTTTAACATATGATATATCGTTGAAAAGATGATTCAGAGCACtat
aatttctgaaaaaataaattcaaaaattttagtaaatgaagatgaaatat
gaagatgaaaaaagcgAACTTTTTATTCTATATTCAAAgttgcgtattag
caatgcaaAACATGATCGAGTTCGACCTTTAAATAAATCTCTGCCTAAAA
CGGCTGGAAATAgtctttttttcagattttcattgcattttatcgttaga
tttctttattttttcacacAGAAACGTTATTGATAACAATACACACGATC
AAGCATGAtctaattgtcaataaaactgattttttcatCCGAAACTTTCC
AAAACTTGCCAGAATAGCCGATTTTTCTTGGAATCTCTTGAGCTGTAGTT
gacattttttcatgaaatttcgcacactgatgcaaaatggacATACCCTG
TGACAGAccctgatttttgaagaaaaaaaataatttgccGGAAAATATGT
CGCGAAACCGATCCTTTGGCagtttctcgagatttcatcattatttttta
cacaaagatgtgtattagcaatgcccaaaatatgaCCGAAACCgatttca
atttctttgttttttttcacacgACCACGaccttccctctcccccataAA
CAATCAATGAGGTTAATGCGTTGTGCATTTCCActaacgctatattttct
gactgattgttgtcattttttccGTAAttctatctaactttcatcatcgg
gtaggtccattcagcatccaGCTTATATTATAAAAATTCGTTTGTAATGA
TTTTCGTCACTATGGGatttttttgttactttttaccGAAGAATCTTGTA
TCGATACAGACCGATAAGGTATTTGATTTAGTTGACTCTATAGAAAATTT
GTTGCGTCGAGATGGATTTCATTTGCCGCATGCCTTCAAATGATTTCAAA
TGCTTTTGCTGCCCTGCCAAAATAAGTTCACAACTATGTATACactcttt
taaatttcaaaCCTTGATTTTTGCATTGGATTCTcgtttttaaactaaaa
aatatcCTATTTATCCTGCCAATTATGAAAATTATcgctgaaattaaaaa
aagagcattgtcaaatttaaagtttttaaaatttctgcTACTCGCAAAAA
AGGTTCCCTAAGGGTACGTTAATTTGACATCTTTGGACACCACTGTAGCT
TGGTTTGGAGTTAAATACTGGATGAAATGCGTTTATTGAACGATATTTCT
TATTTTAGCGGGCCATGAAGTACATATTAAGTGGATCGAACAAGATTGAA
CCCATACGCACAGATGAACTCGTCATTTATCCATGTATCTTTTTCATTAC
GCtattttcatcatcatcaatttcgaaatttatttGTGTTGATACACCAA
ATGTTTATAAAACTGAAACTAGTATTCGCTGGCCTGAATGTATAGTCTTG
TGAATTGGAGTTTGGGTGGTAGGATATCTTGTAAGAATTTCCTTGACCTA
AATCCCAAAAAAAATCAGACAAGCGTGAATGGCCGAACGCGTCTAAATTT
GAATTCACTCGTGAGGGAGACACCTTAAACTGTTCACAAGATCTATATAT
GTTTTACATTGAACGTATTGAAGATAAACAAACACCAACAACACCAGTCA
CCATGAGAGCTCAAACGCGTGAAGAACAAATTGTATTGGTCGTGGATGAA
AAGACACCTGTTAATTGTAAGTTTTCACTCTCTTATTGGTTTATCAAGGA
ATATAAACCAATTTCGTTATTTTCGACCTTGGATTGCCTTTCCTCATAAT
TGTTCATAGTTTTCTAGATTTCTTCGTACTCTACTACAGTGGTGGATCTA
AGGCCTTTCAAAATTTATGGCGGAGAGCGTTTATATGTGAACCATAATCC
TTATGAGGATATTTCTCCGTCAGAAATTTTGAACCTTCTTTAGATCAGAT
GTTTCAGATCCGCAAATGCTTTATCTAATTTTTTAACATTCTTACGATTA
AGTGTAATTATATTCTCGTGGTTTTAATGGGCTTCGATAAGTTTTTAAAC
ATATTGAGTTATCCAAATGATCAATTTCAGTGTTAAGTTAGCTTGTGTTT
ATTGATTTTCAGCACCAGCTCAGAGAAGTATAGTTAGCACACGAAATTCA
GGAAAGGTATAGCAACAGAATATTCAATTTATAATTTTGCAGGATTGTTA
TCAGTTTGTCGATGGAAAGGTTCCTTTAATAAACTTTTAGTAATATGGGG
TGACTCAAAAAACTTTGGATTTCTGACGAACTTTTG

Coding sequence (CDS) from alignment at sc0001479:30650..33535+

>TCONS_00036551 ID=TCONS_00036551|Name=TCONS_00036551|organism=Clytia hemisphaerica|type=CDS|length=2505bp|location=Sequence derived from alignment at sc0001479:30650..33535+ (Clytia hemisphaerica)
ATGAGTAACAACATATTATCAGATTTGAAACTTCCCGAGCCAGACGTTCG
ATTGGTGGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGATGCCGTA
ATGCTCAAATCACTGGTGAAACGAGCCAGGAAAGCATGAAATTCTGGAAG
AAAAACAAGATTCAAAACGACATAAAGCGGGCCATGAAGTACATATTAAG
TGGATCGAACAAGATTGAACCCATACGCACAGATGAACTCGTCATTTATC
CATACAAGCGTGAATGGCCGAACGCGTCTAAATTTGAATTCACTCGTGAG
GGAGACACCTTAAACTGTTCACAAGATCTATATATGTTTTACATTGAACG
TATTGAAGATAAACAAACACCAACAACACCAGTCACCATGAGAGCTCAAA
CGCGTGAAGAACAAATTGTATTGGTCGTGGATGAAAAGACACCTGTTAAT
TCACCAGCTCAGAGAAGTATAGTTAGCACACGAAATTCAGGAAAGGTATA
GATGAGTAACAACATATTATCAGATTTGAAACTTCCCGAGCCAGACGTTC
GATTGGTGGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGATGCCGT
AATGCTCAAATCACTGGTGAAACGAGCCAGGAAAGCATGAAATTCTGGAA
GAAAAACAAGATTCAAAACGACATAAAGCGGGCCATGAAGTACATATTAA
GTGGATCGAACAAGATTGAACCCATACGCACAGATGAACTCGTCATTTAT
CCATACAAGCGTGAATGGCCGAACGCGTCTAAATTTGAATTCACTCGTGA
GGGAGACACCTTAAACTGTTCACAAGATCTATATATGTTTTACATTGAAC
GTATTGAAGATAAACAAACACCAACAACACCAGTCACCATGAGAGCTCAA
ACGCGTGAAGAACAAATTGTATTGGTCGTGGATGAAAAGACACCTGTTAA
TTCACCAGCTCAGAGAAGTATAGTTAGCACACGAAATTCAGGAAAGGTAT
AGATGAGTAACAACATATTATCAGATTTGAAACTTCCCGAGCCAGACGTT
CGATTGGTGGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGATGCCG
TAATGCTCAAATCACTGGTGAAACGAGCCAGGAAAGCATGAAATTCTGGA
AGAAAAACAAGATTCAAAACGACATAAAGCGGGCCATGAAGTACATATTA
AGTGGATCGAACAAGATTGAACCCATACGCACAGATGAACTCGTCATTTA
TCCATACAAGCGTGAATGGCCGAACGCGTCTAAATTTGAATTCACTCGTG
AGGGAGACACCTTAAACTGTTCACAAGATCTATATATGTTTTACATTGAA
CGTATTGAAGATAAACAAACACCAACAACACCAGTCACCATGAGAGCTCA
AACGCGTGAAGAACAAATTGTATTGGTCGTGGATGAAAAGACACCTGTTA
ATTCACCAGCTCAGAGAAGTATAGTTAGCACACGAAATTCAGGAAAGGTA
TAGATGAGTAACAACATATTATCAGATTTGAAACTTCCCGAGCCAGACGT
TCGATTGGTGGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGATGCC
GTAATGCTCAAATCACTGGTGAAACGAGCCAGGAAAGCATGAAATTCTGG
AAGAAAAACAAGATTCAAAACGACATAAAGCGGGCCATGAAGTACATATT
AAGTGGATCGAACAAGATTGAACCCATACGCACAGATGAACTCGTCATTT
ATCCATACAAGCGTGAATGGCCGAACGCGTCTAAATTTGAATTCACTCGT
GAGGGAGACACCTTAAACTGTTCACAAGATCTATATATGTTTTACATTGA
ACGTATTGAAGATAAACAAACACCAACAACACCAGTCACCATGAGAGCTC
AAACGCGTGAAGAACAAATTGTATTGGTCGTGGATGAAAAGACACCTGTT
AATTCACCAGCTCAGAGAAGTATAGTTAGCACACGAAATTCAGGAAAGGT
ATAGATGAGTAACAACATATTATCAGATTTGAAACTTCCCGAGCCAGACG
TTCGATTGGTGGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGATGC
CGTAATGCTCAAATCACTGGTGAAACGAGCCAGGAAAGCATGAAATTCTG
GAAGAAAAACAAGATTCAAAACGACATAAAGCGGGCCATGAAGTACATAT
TAAGTGGATCGAACAAGATTGAACCCATACGCACAGATGAACTCGTCATT
TATCCATACAAGCGTGAATGGCCGAACGCGTCTAAATTTGAATTCACTCG
TGAGGGAGACACCTTAAACTGTTCACAAGATCTATATATGTTTTACATTG
AACGTATTGAAGATAAACAAACACCAACAACACCAGTCACCATGAGAGCT
CAAACGCGTGAAGAACAAATTGTATTGGTCGTGGATGAAAAGACACCTGT
TAATTCACCAGCTCAGAGAAGTATAGTTAGCACACGAAATTCAGGAAAGG
TATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021561	XLOC_021561	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00036551-protein	TCONS_00036551-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001479	supercontig	sc0001479:30650..33535 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.1382	0.111201	0.381715	0.671837	0.551713	0	1.22327	0.343118	0.778547	0.695572	0	0	0	0	0	0	0	0	0	0	18.308	19.6241	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00036551 vs. Swiss-Prot (Human)

BLAST of TCONS_00036551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00036551 (transcript) - C. hemisphaerica