TCONS_00036539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036539
Unique NameTCONS_00036539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036539 ID=TCONS_00036539|Name=TCONS_00036539|organism=Clytia hemisphaerica|type=transcript|length=1473bp
ATAAATCTCTAAAGCTTCAAGATTGGCTCACCTCTCCTTTAAAAATCCAG
TCTCCAATAATCAACTTCGCCACACCTCATTTCAGTCTCAAAAAAACACT
TCAACAACTCTCCAAAAGTCCAGTCTCCAAATACCACTGGTACCGGTACC
ACCattttctctctttctctctccCACTTTTTCACAGTTTGCAACGCCTC
TCCTCGAGAGATTCGTTCCAGATTTACCGCCAATTATCTCAACGAGTTAT
AACCACTTCGCCACACCTCTCCTCCAAAAAGTTCAGTCCCAATAAACCAC
TACAAATCTCTgtgaatttcaaattatttcaacaGCTCACGGTTTGTCCA
CCTCTCCCAGAGAGATTCCAAATTTCCACCAGTTTTTTCAATGAGTTATT
ACCACTTCACCACACCTCtcatccaaaaatttcaatctCAATAAATTTCA
GTCCTCAATAAATCACTGCAAGTCTCAGTGAATTTCACATCTTCTAACAG
GTAAAGGTTTGTCACATCTTTCTTTGAAAAGTTCATCCTAAATTACCATC
GATTTGGTCACCACACCTCTCCACATCTTTCAACAATTTCAAGCTTTGCA
ACACCTCTCCTCAAAATTTCTTAATNCTTTGCAACACCTCTCCTCAaaag
ttcattttcaaaattaattcaaaatttcttaaCGTGCTATTACCACACTC
ATTCCTAAATTTTAACGTTCTCAGAATAGATTCCAACGCTTATCAAGCAA
GAAATGGTGAAAAGCAGCCATCCATGGCTCAACCGTCGATTCAGCCAAGA
GTATAATGCCTGCCAAGACATGATCAACTGGCTAGGAAAGATGAGAAGGA
GCTAAGGACGGATGTTTCGTTGATTACACATCACATCCCTCTGTCAGCAT
GAAGGAATTGTCCGACGATGAAACTTTTCTGAAAAACCATTAAATGATCC
AGCATGGCTTTTTCAGGTGACGCCCTAGAAATGAGGCCATTGTGGTGAAA
TGTGTTAAGAAACACGTCTAAATTGACACCCAATACCAAAAACTTCGAAT
TCGAACAATCCCGAAGATAACAATTGAAGTTAACCTGATCAATCTGATGC
GACCTTCACATTCTAATAAAATTAGAGGAATCTGCTCAATCAAGGAACTT
GGTTCAATCAGGCTATCACAGCGCCACagcaatttattttttatgaatgt
cTTCATGTGTGATCTCGTTTTATCTCAGAAAAATCACATATCGAAATTTG
CAAGGCATGATGACCACCCAGTTCGAAGTAATGTGTGACATTTGCATTTG
GTACAGAGgaAAGCACCTAGCTTCGAACTTCAAAGATTGCCACCAGTTCG
CGTAGAATTTCCAATGGATTTTGTACAACATAATCGAATGTTGGTATTTC
TTATTCAAGAATGAAGTTAACTACTACAAAGCAGAGTACAGAttgttaaa
ttcaaaaaaatattttgaaatat
Run BLAST on NCBI

protein sequence of TCONS_00036539-protein

>TCONS_00036539-protein ID=TCONS_00036539-protein|Name=TCONS_00036539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
KSLKLQDWLTSPLKIQSPIINFATPHFSLKKTLQQLSKSPVSKYHWYRYH
HFLSFSLPLFHSLQRLSSRDSFQIYRQLSQRVITTSPHLSSKKFSPNKPL
QISVNFKLFQQLTVCPPLPERFQISTSFFNELLPLHHTSHPKISISINFS
PQ
Run BLAST on NCBI

transcript from alignment at sc0001478:18179..21684-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036539 ID=TCONS_00036539|Name=TCONS_00036539|organism=Clytia hemisphaerica|type=transcript|length=3506bp|location=Sequence derived from alignment at sc0001478:18179..21684- (Clytia hemisphaerica)
ATAAATCTCTAAAGCTTCAAGATTGGCTCACCTCTCCTTTAAAAATCCAG
TCTCCAATAATCAACTTCGCCACACCTCATTTCAGTCTCAAAAAAACACT
TCAACAACTCTCCAAAAGTCCAGTCTCCAAATACCACTGGTACCGGTACC
ACCATTTTCTCTCTTTCTCTCTCCCACTTTTTCACAGTTTGCAACGCCTC
TCCTCGAGAGATTCGTTCCAGATTTACCGCCAATTATCTCAACGAGTTAT
AACCACTTCGCCACACCTCTCCTCCAAAAAGTTCAGTCCCAATAAACCAC
TACAAATCTCTGTGAATTTCAAATTATTTCAACAGCTCACGGTTTGTCCA
CCTCTCCCAGAGAGATTCCAAATTTCCACCAGTTTTTTCAATGAGTTATT
ACCACTTCACCACACCTCTCATCCAAAAATTTCAATCTCAATAAATTTCA
GTCCTCAATAAATCACTGCAAGTCTCAGTGAATTTCACATCTTCTAACAG
GTAAAGGTTTGTCACATCTTTCTTTGAAAAGTTCATCCTAAATTACCATC
GATTTGGTCACCACACCTCTCCACATCTTTCAACAATTTCAAGCTTTGCA
ACACCTCTCCTCAAAATTTCTTAATNCTTTGCAACACCTCTCCTCAAAAG
TTCATTTTCAAAATTAATTCAAAATTTCTTAACGTGCTATTACCACACTC
ATTCCTAAATTTTAACGTTCTCAGAATAGATTCCAACGCTTATCAAGCAA
GAAATGGTGAAAAGCAGCCATCCATGGCTCAACCGTCGATTCAGCCAAGA
GTATAATGCCTGCCAAGACATGATCAACTGGCTAGGAAAGATGAGAAGGA
GCTAAGGACGGATGTTTCGTTGATTACACATCACATCCCTCTGTCAGCAT
GAAGGAATTGTCCGACGATGAAACTTTTCTGAAAAACCATTAAATGATCC
AGCATGGGTAAGCCTTTTGAATTACAACCACTACCACTTAATTAGGCTCT
AAACCGAAAGTGTTTACTGATGTTTACTTTATTCATTTTCGTTCCTTATT
GTATACAAGGTCATCATTGACCTAAGTGAACATTTTTCAAGAAAAGCCCT
ACATTGCCAAAACAAAATTTTAGCTAGCTTGCAGGTTATTTTACAGTATT
TTATCTATATTTTGTTTTGTTGCTGATATCCGGATAAATACATGCAAGGA
CTTGAAATTTTGGCTTGTCATGTAAAAACACTTCTTAAAACCCATTCCCA
CTGGAAAATTTGGCAAAAAATTGTTCCCTGGTTCGAAAATACCCTGGAAT
TTTTTTCTCCACTGGAAAATCAATGTCTAAAGATTACACTCCAAAATTTT
TTAACTTTGGAACAAGAACAATAAAATTTCTATCCCCGTTAGGATTTCAA
CGGGGATTTTTATCTCCTGTGAGACAGGGGTGTTCTTAATCAATGGCTTC
TCTTTTATAGCTTTTTCAGGTGACGCCCTAGAAATGAGGCCATTGTGGTG
AAATGTGTTAAGAAACACGTCTAAATTGACACCCAATACCAAAAACTTCG
AATTCGAACAATCCCGAAGATAACAATTGAAGTTAACCTGATCAATCTGA
TGCGACCTTCACATTCTAATAAAATTAGAGGTAGGTAAATGACGTGGCTA
GTTCTGGGAAATAATATATTTAGATGGTAAAAATATCATCTGGACTCATT
CTGGACTAATAGAATCTCTTTGTGGCAAACACACTCTCCTTGTTACCCAT
TAAATGCTGGTGATCCCCTGAAAAGGCACGACAAGAAAACAACGTTTTAA
ATTCTGCTTCACTTTTTTCGGGACACAATGCTTTGATATTTATACTTTTG
AATTATATCATTTAAGGTTATCACTCTGCATCTAGAATTTAATCATACGC
CAAATGAACTGTTCAACCTTGAGCTTTGGAAGGCTTTTTACGGAATCTCA
TGAATTTATTTTCTTCCAGGAATCTGCTCAATCAAGGAACTTGGTTCAAT
CAGGCTATCACAGCGCCACAGCAATTTATTTTTTATGAATGTCTTCATGT
GTGATCTCGTTTTATCTCAGAAAAATCACATATCGAAATTTGCAAGGCAT
GATGACCACCCAGTTCGAAGTAATGTGTGACATTTGCATTTGGTACAGAG
GTGAGATTAATATTTTACAATATATCTGATATAGAAATTGATCACTCCAT
TTTATTTTAGGGTGTACTTCAAGATGAATTTTTAGGGGTATAAGAAAGTT
TAACTATTTGTCCATTGGTTTGGGTCGTTCTTTTTCAAAAGGGGTTCGTT
TTGCGATAAAACATCGCCTATGTTTACCCGAGAGTTCTAAAGGAAAATAT
TTTGAATATCTATTGGGTTAAAAGTTATTCTGAAATTTCCGAAGAATTAG
AATACTAATTTTGGTCCATCAATCCCACATTTTGTTTATTTTTGCAAATT
ATGCCATTTACCAGAGGGTACCCGCAAATTTCAATACATATTTTGGCTTG
AAAAGGTCTGTCAAGAGAAACAGACCTTTCAAGCCGAAAGAGTCTTTCAG
GCCAAAAGATTTAGTGAAATTGTGTGTGTACCCCTTGCATGAACATTAAA
TTCAAGACAAAGAGGCGCTTTTTCAATCTATAAAAGTACAATGCAAATTA
TATTAGTAGTATGACTTGGTTTCCCCCAGTGGAAAAATACTCTGGAATTT
CAAACACACTGGGAAATTTAGTTTGATTTTATCCCATTCGAAATTCAATG
TTTAAAAATGGCACTCCAAAACCATCTCCACTGGATTTTTTAACCTTAGA
TCAATAGAATTTCTATCCCCATCGGAATTTCAATAGAAGTTTTTATCCCA
GCACCGAGGAAAAAAGTTCCACCGGGGCTGTGAGACAGGGGTGTAAAGCT
CCATCATGTTAGGTTTTTAAAAGGGATCATTATTGTACACGTTTTTTTTT
TAAGAAACACAGTTTTAAGAAACATGAGGCTCAGAATGCCTAAAAACTAA
GAAACATCTAAGAAACATTTTTTAAGAACCTTCCAATCCAGCCTTCCATG
AATGAGGCTGATTATGTCAAAAAGTTTAGAAACATGTAAGAAACATTTGA
GGCTCAAAAGGCCGATTTCTTAAGAAACATTTAGGCTGTTTGGTAGAACT
AGTTTCTTAAAAAAAAAACGTGTATCAGCAGTTGATCAGACAGATAGTTG
ATCTATTCAAGGAAGTCTTGAAGCTTAGAAATTCAATCAAAAGGTCCAAT
ATTCGGAAAGAGCCTCGTTCTCAATTATCAATTATCTGTATAGTGATTAA
GAATTTCTTGTTTTATTGTTGAATTATTGTTTTGTTTTCAGGAAAGCACC
TAGCTTCGAACTTCAAAGATTGCCACCAGTTCGCGTAGAATTTCCAATGG
ATTTTGTACAACATAATCGAATGTTGGTATTTCTTATTCAAGAATGAAGT
TAACTACTACAAAGCAGAGTACAGATTGTTAAATTCAAAAAAATATTTTG
AAATAT

Coding sequence (CDS) from alignment at sc0001478:18179..21684-

>TCONS_00036539 ID=TCONS_00036539|Name=TCONS_00036539|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0001478:18179..21684- (Clytia hemisphaerica)
AAATCTCTAAAGCTTCAAGATTGGCTCACCTCTCCTTTAAAAATCCAGTC
TCCAATAATCAACTTCGCCACACCTCATTTCAGTCTCAAAAAAACACTTC
AACAACTCTCCAAAAGTCCAGTCTCCAAATACCACTGGTACCGGTACCAC
CATTTTCTCTCTTTCTCTCTCCCACTTTTTCACAGTTTGCAACGCCTCTC
CTCGAGAGATTCGTTCCAGATTTACCGCCAATTATCTCAACGAGTTATAA
CCACTTCGCCACACCTCTCCTCCAAAAAGTTCAGTCCCAATAAACCACTA
CAAATCTCTGTGAATTTCAAATTATTTCAACAGCTCACGGTTTGTCCACC
TCTCCCAGAGAGATTCCAAATTTCCACCAGTTTTTTCAATGAGTTATTAC
CACTTCACCACACCTCTCATCCAAAAATTTCAATCTCAATAAATTTCAGT
CCTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021552XLOC_021552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036539-exon-sc0001478-1575043694:20728..21684TCONS_00036539-exon-sc0001478-1575043694:20728..21684Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1575043694:20055..20224TCONS_00036539-exon-sc0001478-1575043694:20055..20224Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1575043694:19535..19715TCONS_00036539-exon-sc0001478-1575043694:19535..19715Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1575043694:18179..18343TCONS_00036539-exon-sc0001478-1575043694:18179..18343Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1510915933:20728..21684TCONS_00036539-exon-sc0001478-1510915933:20728..21684Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1510915933:20055..20224TCONS_00036539-exon-sc0001478-1510915933:20055..20224Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1510915933:19535..19715TCONS_00036539-exon-sc0001478-1510915933:19535..19715Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1510915933:18179..18343TCONS_00036539-exon-sc0001478-1510915933:18179..18343Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1491911889:20728..21684TCONS_00036539-exon-sc0001478-1491911889:20728..21684Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1491911889:20055..20224TCONS_00036539-exon-sc0001478-1491911889:20055..20224Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1491911889:19535..19715TCONS_00036539-exon-sc0001478-1491911889:19535..19715Clytia hemisphaericaexon
TCONS_00036539-exon-sc0001478-1491911889:18179..18343TCONS_00036539-exon-sc0001478-1491911889:18179..18343Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036539-proteinTCONS_00036539-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001478supercontigsc0001478:18179..21684 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02594	0.973777	0.199849	0	0.476057	0.438884	0.799044	1.17279	0.623646	1.10143	0.688749	0.715015	0.274183	0.360988	0.522611	0.353898	0.541409	0.571297	0.260609	0.28383	0.553768	0.230563	0.935923	0.59204	0.372436	0.228738	3.25214	3.2273	0.214016	0.48867
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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