TCONS_00036538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036538
Unique NameTCONS_00036538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036538 ID=TCONS_00036538|Name=TCONS_00036538|organism=Clytia hemisphaerica|type=transcript|length=746bp
CTTTGCAACACCTCTCCTCAaaagttcattttcaaaattaattcaaaatt
tcttaaCGTGCTATTACCACACTCATTCCTAAATTTTAACGTTCTCAGAA
TAGATTCCAACGCTTATCAAGCAAGAAATGGTGAAAAGCAGCCATCCATG
GCTCAACCGTCGATTCAGCCAAGAGTATAATGCCTGCCAAGACATGATCA
ACTGGCTAGGAAAGATGAGAAGGAGCTAAGGACGGATGTTTCGTTGATTA
CACATCACATCCCTCTGTCAGCATGAAGGAATTGTCCGACGATGAAACTT
TTCTGAAAAACCATTAAATGATCCAGCATGGCTTTTTCAGGTGACGCCCT
AGAAATGAGGCCATTGTGGTGAAATGTGTTAAGAAACACGTCTAAATTGA
CACCCAATACCAAAAACTTCGAATTCGAACAATCCCGAAGATAACAATTG
AAGTTAACCTGATCAATCTGATGCGACCTTCACATTCTAATAAAATTAGA
GAAAAATCACATATCGAAATTTGCAAGGCATGATGACCACCCAGTTCGAA
GTAATGTGTGACATTTGCATTTGGTACAGAGgaAAGCACCTAGCTTCGAA
CTTCAAAGATTGCCACCAGTTCGCGTAGAATTTCCAATGGATTTTGTACA
ACATAATCGAATGTTGGTATTTCTTATTCAAGAATGAAGTTAACTACTAC
AAAGCAGAGTACAGAttgttaaattcaaaaaaatattttgaaatat
Run BLAST on NCBI

transcript from alignment at sc0001478:18179..21058-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036538 ID=TCONS_00036538|Name=TCONS_00036538|organism=Clytia hemisphaerica|type=transcript|length=2880bp|location=Sequence derived from alignment at sc0001478:18179..21058- (Clytia hemisphaerica)
CTTTGCAACACCTCTCCTCAAAAGTTCATTTTCAAAATTAATTCAAAATT
TCTTAACGTGCTATTACCACACTCATTCCTAAATTTTAACGTTCTCAGAA
TAGATTCCAACGCTTATCAAGCAAGAAATGGTGAAAAGCAGCCATCCATG
GCTCAACCGTCGATTCAGCCAAGAGTATAATGCCTGCCAAGACATGATCA
ACTGGCTAGGAAAGATGAGAAGGAGCTAAGGACGGATGTTTCGTTGATTA
CACATCACATCCCTCTGTCAGCATGAAGGAATTGTCCGACGATGAAACTT
TTCTGAAAAACCATTAAATGATCCAGCATGGGTAAGCCTTTTGAATTACA
ACCACTACCACTTAATTAGGCTCTAAACCGAAAGTGTTTACTGATGTTTA
CTTTATTCATTTTCGTTCCTTATTGTATACAAGGTCATCATTGACCTAAG
TGAACATTTTTCAAGAAAAGCCCTACATTGCCAAAACAAAATTTTAGCTA
GCTTGCAGGTTATTTTACAGTATTTTATCTATATTTTGTTTTGTTGCTGA
TATCCGGATAAATACATGCAAGGACTTGAAATTTTGGCTTGTCATGTAAA
AACACTTCTTAAAACCCATTCCCACTGGAAAATTTGGCAAAAAATTGTTC
CCTGGTTCGAAAATACCCTGGAATTTTTTTCTCCACTGGAAAATCAATGT
CTAAAGATTACACTCCAAAATTTTTTAACTTTGGAACAAGAACAATAAAA
TTTCTATCCCCGTTAGGATTTCAACGGGGATTTTTATCTCCTGTGAGACA
GGGGTGTTCTTAATCAATGGCTTCTCTTTTATAGCTTTTTCAGGTGACGC
CCTAGAAATGAGGCCATTGTGGTGAAATGTGTTAAGAAACACGTCTAAAT
TGACACCCAATACCAAAAACTTCGAATTCGAACAATCCCGAAGATAACAA
TTGAAGTTAACCTGATCAATCTGATGCGACCTTCACATTCTAATAAAATT
AGAGGTAGGTAAATGACGTGGCTAGTTCTGGGAAATAATATATTTAGATG
GTAAAAATATCATCTGGACTCATTCTGGACTAATAGAATCTCTTTGTGGC
AAACACACTCTCCTTGTTACCCATTAAATGCTGGTGATCCCCTGAAAAGG
CACGACAAGAAAACAACGTTTTAAATTCTGCTTCACTTTTTTCGGGACAC
AATGCTTTGATATTTATACTTTTGAATTATATCATTTAAGGTTATCACTC
TGCATCTAGAATTTAATCATACGCCAAATGAACTGTTCAACCTTGAGCTT
TGGAAGGCTTTTTACGGAATCTCATGAATTTATTTTCTTCCAGGAATCTG
CTCAATCAAGGAACTTGGTTCAATCAGGCTATCACAGCGCCACAGCAATT
TATTTTTTATGAATGTCTTCATGTGTGATCTCGTTTTATCTCAGAAAAAT
CACATATCGAAATTTGCAAGGCATGATGACCACCCAGTTCGAAGTAATGT
GTGACATTTGCATTTGGTACAGAGGTGAGATTAATATTTTACAATATATC
TGATATAGAAATTGATCACTCCATTTTATTTTAGGGTGTACTTCAAGATG
AATTTTTAGGGGTATAAGAAAGTTTAACTATTTGTCCATTGGTTTGGGTC
GTTCTTTTTCAAAAGGGGTTCGTTTTGCGATAAAACATCGCCTATGTTTA
CCCGAGAGTTCTAAAGGAAAATATTTTGAATATCTATTGGGTTAAAAGTT
ATTCTGAAATTTCCGAAGAATTAGAATACTAATTTTGGTCCATCAATCCC
ACATTTTGTTTATTTTTGCAAATTATGCCATTTACCAGAGGGTACCCGCA
AATTTCAATACATATTTTGGCTTGAAAAGGTCTGTCAAGAGAAACAGACC
TTTCAAGCCGAAAGAGTCTTTCAGGCCAAAAGATTTAGTGAAATTGTGTG
TGTACCCCTTGCATGAACATTAAATTCAAGACAAAGAGGCGCTTTTTCAA
TCTATAAAAGTACAATGCAAATTATATTAGTAGTATGACTTGGTTTCCCC
CAGTGGAAAAATACTCTGGAATTTCAAACACACTGGGAAATTTAGTTTGA
TTTTATCCCATTCGAAATTCAATGTTTAAAAATGGCACTCCAAAACCATC
TCCACTGGATTTTTTAACCTTAGATCAATAGAATTTCTATCCCCATCGGA
ATTTCAATAGAAGTTTTTATCCCAGCACCGAGGAAAAAAGTTCCACCGGG
GCTGTGAGACAGGGGTGTAAAGCTCCATCATGTTAGGTTTTTAAAAGGGA
TCATTATTGTACACGTTTTTTTTTTAAGAAACACAGTTTTAAGAAACATG
AGGCTCAGAATGCCTAAAAACTAAGAAACATCTAAGAAACATTTTTTAAG
AACCTTCCAATCCAGCCTTCCATGAATGAGGCTGATTATGTCAAAAAGTT
TAGAAACATGTAAGAAACATTTGAGGCTCAAAAGGCCGATTTCTTAAGAA
ACATTTAGGCTGTTTGGTAGAACTAGTTTCTTAAAAAAAAAACGTGTATC
AGCAGTTGATCAGACAGATAGTTGATCTATTCAAGGAAGTCTTGAAGCTT
AGAAATTCAATCAAAAGGTCCAATATTCGGAAAGAGCCTCGTTCTCAATT
ATCAATTATCTGTATAGTGATTAAGAATTTCTTGTTTTATTGTTGAATTA
TTGTTTTGTTTTCAGGAAAGCACCTAGCTTCGAACTTCAAAGATTGCCAC
CAGTTCGCGTAGAATTTCCAATGGATTTTGTACAACATAATCGAATGTTG
GTATTTCTTATTCAAGAATGAAGTTAACTACTACAAAGCAGAGTACAGAT
TGTTAAATTCAAAAAAATATTTTGAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021552XLOC_021552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036538-exon-sc0001478-1575043694:20728..21058TCONS_00036538-exon-sc0001478-1575043694:20728..21058Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1575043694:20055..20224TCONS_00036538-exon-sc0001478-1575043694:20055..20224Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1575043694:19535..19614TCONS_00036538-exon-sc0001478-1575043694:19535..19614Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1575043694:18179..18343TCONS_00036538-exon-sc0001478-1575043694:18179..18343Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1510915933:20728..21058TCONS_00036538-exon-sc0001478-1510915933:20728..21058Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1510915933:20055..20224TCONS_00036538-exon-sc0001478-1510915933:20055..20224Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1510915933:19535..19614TCONS_00036538-exon-sc0001478-1510915933:19535..19614Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1510915933:18179..18343TCONS_00036538-exon-sc0001478-1510915933:18179..18343Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1491911889:20728..21058TCONS_00036538-exon-sc0001478-1491911889:20728..21058Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1491911889:20055..20224TCONS_00036538-exon-sc0001478-1491911889:20055..20224Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1491911889:19535..19614TCONS_00036538-exon-sc0001478-1491911889:19535..19614Clytia hemisphaericaexon
TCONS_00036538-exon-sc0001478-1491911889:18179..18343TCONS_00036538-exon-sc0001478-1491911889:18179..18343Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001478supercontigsc0001478:18179..21058 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49983	0.508669	0	0.073184	0	0.17088	0	0	0.520229	0.35941	0.667587	0.632976	0	1.30005	0	0.478317	0.542882	0.6656	0	0	0.15781	0.806516	0	1.32232	0.265959	0.178467	2.4686	1.72173	1.09124	0.639224
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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