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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036524 ID=TCONS_00036524|Name=TCONS_00036524|organism=Clytia hemisphaerica|type=transcript|length=388bp
ttcaggATGGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACCAA
CAAATGGGACGGAAAACGCATGGAAAGTGTGAGCTTGAATGATGGAACTA
CGCTCAGTTTTGGTGatgtttggaaaattttgttggaaaagaatttcgcg
aaattcgaagaaattttCCGCCAAAAACCGAACATCGTCTCGTTGCGTCG
TGATGGTTGGACACTTCTCATGAGGGCTGTTCGTGGAGATCGTTTCGACG
TTTTCGTTCACTTGATGAAATATCCTCAAGATTTTTCACTCGTGAACAAT
AATGGTATGAACGTTCTTCATTGGGTTGGTTTGGTTGGAACAGTTCGTCA
TTTGGAACAATTTGATCAACAAACAATCAAAAAGTTGA Run BLAST on NCBI protein sequence of TCONS_00036524-protein >TCONS_00036524-protein ID=TCONS_00036524-protein|Name=TCONS_00036524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
FRMAFTLSTSISSLGTNKWDGKRMESVSLNDGTTLSFGDVWKILLEKNFA
KFEEIFRQKPNIVSLRRDGWTLLMRAVRGDRFDVFVHLMKYPQDFSLVNN
NGMNVLHWVGLVGTVRHLEQFDQQTIKKL Run BLAST on NCBI transcript from alignment at sc0001477:14760..18675+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036524 ID=TCONS_00036524|Name=TCONS_00036524|organism=Clytia hemisphaerica|type=transcript|length=3916bp|location=Sequence derived from alignment at sc0001477:14760..18675+ (Clytia hemisphaerica)
ttcaggATGGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACGTA
AGTCAATACAGTTGATGTCCTCTGATTCAGCATTGTCAATCAATTAACAG
TCACTTGACAAATTCCCTTTAAATTTCtcataaaagattttttatcGGAC
ATTCTATCGCTATCATCTCCCTGGGGTTGGGGTAATTAAAATTCACGAtt
taacgatttacgattcacgattTGCGATGCACGATTTCCGATCCATGTTC
CATGCATAAATTATGCTGATTTATGCCTAATCATGCTAATCATaacaaaa
tgatttgaaaacgGAGTTTAgttcgggggggggggcgacATTCTTGAAAG
ATTCCCTATAAAGACCGAATGTTCTATTTCCTTGATTTTGCaataagtga
agaaaaaaaattaNTTCGTGGATTGGAAATGGCCCATACAATCATCTTTG
TGGATCCAGAAAACGAGGCCAACGCACATTTTCTCATCGAAGGAATCACA
CGAACCATAACAAATCTTGATGTCATTTCAACTAAACCTTTTCCACTAAA
TCCTTCCACGAGTATCgaaagagcttttcaaaaatatgtcgACGGGACTT
TAGCAATCAAGACACACGTTGAATCAAGCAAAGACGCTGNTAATAATTAC
TCCTGCATATAGCAACAAATGGGACGGAAAACGCATGGAAAGTGTGAGCT
TGAATGATGGAACTACGCTCAGTTTTGGTGGTAAGTTTGATtcgaaattt
tgttttcatataTATGGaagattttataaattttcaactATACAACTATA
CAATCAAAAGCTCGCAAGTACCCAAAACGAAACATCCTAATTTTCTATTC
TGGTGTTCTATATTTTCTGGACAAAAGCCTTTGAACATATAATCCTATAA
TACACCCCTGTGTCACAGACCCGGTGGACCCTCACCCCGGTGGAAAAATA
GGCCAAAAAATCGTCCCCGGTGGAAAAAATATCCTACAATTTCAACCCCA
CTGCGAAATtactctatgattttatccccattgaaaactgaatgtaaaac
attgcactccaaaaccatccccactggaattttcgagctggaaaaaatag
attttcaatccccattggcattttgatagaaattttcatccccactgagg
gaaaaagttctaccggggcactgagacaggggtgttataataATTGTAGG
CCAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTATTTCATCATTCATT
TGATTCAATGTTCAAATCATAATCTCATTTCATTGACAGTAGTGAACAAA
CAGACGATTAGACACTGCTAGACAACAAAGGGCTAGCCATACGAGATTTA
GTGTTGCGGGTGTGTAGTGGAAcgggttttgaaaaattttaggaAAACCG
AAATACAGTAAACTCTCTTTAGTTCGAACCcctactattcgaatctttct
ataattcgaactgaaACATTAGTCCGCTCAGTTGGAAAGTTAATTAAAGT
ACCGTCCGTAattatcaaatctttttttaatttgaagaaaatcctTGGTC
CCTCAAAGGTACGGGTCCTTATTTTACCCGAAATGCTCACTTTCTTATTA
TCAATAGctaaattttgtcaaaatttcaagtcaatagcattttccAATCA
CTAGATACGGTATCCTATGACTGATTTAGTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAAAATGAA
AGTTTCGTGCGTTTGtttcatttgctttttatatttgatggTGGTGGGGT
GACTGGTTTTTGTGGAAaagtgaatgaatgaatgaacgaatgtaatacac
gtttttttttatataaggaacacgtttataaggaactcgaggctcaaaat
ggtccaaaaaataaggaactgctcaagctgagaataagaaaacaagtttt
aaggaacagtaagagatggttatccaaacttagcagctatgtaaataagg
aactcgataaggaactttgaggctgaaattctctgtaaaaataaggaact
ccaggctcagagcaaagttaaggttccttataaaaataataaaacgtGTA
GGAGaaatttctagattttttaCCTTTCATTTTCTGAACCTCTGCTCTAG
TGCtgtatattttagtgaaagtacGGGTGCAAAATTACATTTATTCAAGC
taggattttttttaaataaaacttaGTTCAGCTTTATATGACGATTTGAG
AAACACATTACATATTAGCACGTCTATTTTATCACAATTTCGTGATTCTT
TTTCAGAATAAGGCATAGTTTTTTCGGATTGCATCTCAAGTAGTTCATGT
GTACTTTTCTGTTTTATCTGTGCTGTTTGTGTAATAGTTCAcgcaaaatt
tcacttttgacaaataattctattttaaaaactttttcgactttttcaca
ttttgagaaatttttcgtggaatttattttttctcagaATGCGACCGAGT
TTCGTTTTCcgcattgaaaaaattaatttccttctgaacaaaagtttttc
atctaaaccaaaaaaaattagttcatCAATCTGGAAATAAATTTCCAATT
CCGtttccaatttttcagctttgaaTCTTTTTTACTTCTTGAGAtctaga
tcttcatttttttctaacttcaatttttttaccgtctcaaataaaaatga
tttctcgctgagcaaaaagttttttttcaaaattcaaaattctttcGCCA
TCAAttcggaaatatttttctcgttctgtttacaaaatttcagcttcaaa
gtatttttagttCCTGAGATATCGagattcattttttgttgaattttttt
ttttactccgtgaaaagtttgaatttcttctttttttcttcagatgtttg
gaaaattttgttggaaaagaatttcgcgaaattcgaagaaattttCCGCC
AAAAACCGAACATCGTCTCGTTGCGTCGTGATGGTTGGACACTTCTCATG
AGGGCTGTTCGTGGAGATCGTTTCGACGTTTTCGTTCACTTGATGAAATA
TCCTCAAGATTTTTCACTCGTGAACAATAATGGTATGAACGTTCTTCATT
GGGTTGGTTTGGTTGGAACAGTTCGTCATTTGGAACAATTTGATCAACAA
ACAATCAAAAAGTTGA Coding sequence (CDS) from alignment at sc0001477:14760..18675+ >TCONS_00036524 ID=TCONS_00036524|Name=TCONS_00036524|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0001477:14760..18675+ (Clytia hemisphaerica)
ttcaggATGGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACCAA
CAAATGGGACGGAAAACGCATGGAAAGTGTGAGCTTGAATGATGGAACTA
CGCTCAGTTTTGGTGatgtttggaaaattttgttggaaaagaatttcgcg
aaattcgaagaaattttCCGCCAAAAACCGAACATCGTCTCGTTGCGTCG
TGATGGTTGGACACTTCTCATGAGGGCTGTTCGTGGAGATCGTTTCGACG
TTTTCGTTCACTTGATGAAATATCCTCAAGATTTTTCACTCGTGAACAAT
AATGGTATGAACGTTCTTCATTGGGTTGGTTTGGTTGGAACAGTTCGTCA
TTTGGAACAATTTGATCAACAAACAATCAAAAAGTTGttcaggATGGCGT
TTACTCTTTCAACTTCCATTTCATCTTTGGGAACCAACAAATGGGACGGA
AAACGCATGGAAAGTGTGAGCTTGAATGATGGAACTACGCTCAGTTTTGG
TGatgtttggaaaattttgttggaaaagaatttcgcgaaattcgaagaaa
ttttCCGCCAAAAACCGAACATCGTCTCGTTGCGTCGTGATGGTTGGACA
CTTCTCATGAGGGCTGTTCGTGGAGATCGTTTCGACGTTTTCGTTCACTT
GATGAAATATCCTCAAGATTTTTCACTCGTGAACAATAATGGTATGAACG
TTCTTCATTGGGTTGGTTTGGTTGGAACAGTTCGTCATTTGGAACAATTT
GATCAACAAACAATCAAAAAGTTGttcaggATGGCGTTTACTCTTTCAAC
TTCCATTTCATCTTTGGGAACCAACAAATGGGACGGAAAACGCATGGAAA
GTGTGAGCTTGAATGATGGAACTACGCTCAGTTTTGGTGatgtttggaaa
attttgttggaaaagaatttcgcgaaattcgaagaaattttCCGCCAAAA
ACCGAACATCGTCTCGTTGCGTCGTGATGGTTGGACACTTCTCATGAGGG
CTGTTCGTGGAGATCGTTTCGACGTTTTCGTTCACTTGATGAAATATCCT
CAAGATTTTTCACTCGTGAACAATAATGGTATGAACGTTCTTCATTGGGT
TGGTTTGGTTGGAACAGTTCGTCATTTGGAACAATTTGATCAACAAACAA
TCAAAAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036524-exon-sc0001477-1491911889:14760..14806 | TCONS_00036524-exon-sc0001477-1491911889:14760..14806 | Clytia hemisphaerica | exon |
| TCONS_00036524-exon-sc0001477-1510915933:14760..14806 | TCONS_00036524-exon-sc0001477-1510915933:14760..14806 | Clytia hemisphaerica | exon |
| TCONS_00036524-exon-sc0001477-1575043694:14760..14806 | TCONS_00036524-exon-sc0001477-1575043694:14760..14806 | Clytia hemisphaerica | exon |
| TCONS_00036524-exon-sc0001477-1491911889:15422..15489 | TCONS_00036524-exon-sc0001477-1491911889:15422..15489 | Clytia hemisphaerica | exon |
| TCONS_00036524-exon-sc0001477-1510915933:15422..15489 | TCONS_00036524-exon-sc0001477-1510915933:15422..15489 | Clytia hemisphaerica | exon |
| TCONS_00036524-exon-sc0001477-1575043694:15422..15489 | TCONS_00036524-exon-sc0001477-1575043694:15422..15489 | Clytia hemisphaerica | exon |
| TCONS_00036524-exon-sc0001477-1491911889:18403..18675 | TCONS_00036524-exon-sc0001477-1491911889:18403..18675 | Clytia hemisphaerica | exon |
| TCONS_00036524-exon-sc0001477-1510915933:18403..18675 | TCONS_00036524-exon-sc0001477-1510915933:18403..18675 | Clytia hemisphaerica | exon |
| TCONS_00036524-exon-sc0001477-1575043694:18403..18675 | TCONS_00036524-exon-sc0001477-1575043694:18403..18675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001477 | supercontig | sc0001477:14760..18675 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020683 | Ankyrin_rpt-contain_dom |
Blast
The following BLAST results are available for this feature:
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