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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036518 ID=TCONS_00036518|Name=TCONS_00036518|organism=Clytia hemisphaerica|type=transcript|length=1007bp
GCtcgccaaataaaaaagatggaaCAAGACGACTAATTATGGACCTTTCC
CAACTTCTTGGCGAGTCAATTAAGGCATCCCCAAGGAGGACTTCCTAGTC
AAATATGCTAGCTTTGACCAGGCTACAGAACTTGTATATAAAATGGGAAA
GAACTGTTTGATGACAAAAATTGACATCCAGCACGCATTCCGCCTCCTTC
CCGTCCATCCATCCCAATGGGTATTACTTGGCATTCGCTGGCGGGGNCTT
GTATATAAAATGGGAAAGGACTGTTTGATGACAAAAATTGACATCCAGCA
CGCATTCCGCCTCCTTCCCGTCCATCCATCCCAATGGGTATTACTTGGCA
TTCACTGGCAGGACATGTACTTTGTCGACACTCGCTTACCTTTTGGATTA
CGTTCATCACCAGCAATATTTACATCATTTGCAGACACAGTACATTGGAT
CCTTCAGAATAAATACGATCTTACTGAATCGACACATTACTCTGACGATT
TCCTATTTGTTCATCAACCCACAACATCAATAGCCAACAATGAGATTGGA
ATTGTGCTATCAGCTTTTCATCACCTCGGAATCCCAACTGCGGATGATAA
GACTGAAGGCCTTTCACGTCAGATAACCTACTTGGGGATTGAAATAGATT
CAGCAGAGCAAATTATTCGCATACCTGAGGATAAGTATATTGAACTGATA
GATTCACTGCCATTCTGGACATCACGTCGAAAATGTACTAAAAAAGAACT
GTTATCTCTAATTGGGTAACTCTCATTTGCTTGCAAGGTTGTTATACCTG
GTCGCGTCACACGTCAACATCAGTCACAAAATTGCATCATCAAATAATTT
AAACAGCGAGGCACGTGCAGACATCAAATGGTGGATTGACTTCCTCCCGT
CCTGGAACAAATCATCCATTATTCCTGACCCATTCACCATACTCTCCAGT
GACATCAGACTCAACATGGATGCTTCAAACATTGGTCTCGGGGCGATCTA
TGGAAAC Run BLAST on NCBI protein sequence of TCONS_00036518-protein >TCONS_00036518-protein ID=TCONS_00036518-protein|Name=TCONS_00036518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MGKNCLMTKIDIQHAFRLLPVHPSQWVLLGIRWRXLVYKMGKDCLMTKID
IQHAFRLLPVHPSQWVLLGIHWQDMYFVDTRLPFGLRSSPAIFTSFADTV
HWILQNKYDLTESTHYSDDFLFVHQPTTSIANNEIGIVLSAFHHLGIPTA
DDKTEGLSRQITYLGIEIDSAEQIIRIPEDKYIELIDSLPFWTSRRKCTK
KELLSLIG Run BLAST on NCBI transcript from alignment at sc0001476:43218..44224 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036518 ID=TCONS_00036518|Name=TCONS_00036518|organism=Clytia hemisphaerica|type=transcript|length=1007bp|location=Sequence derived from alignment at sc0001476:43218..44224 (Clytia hemisphaerica)
GTTTCCATAGATCGCCCCGAGACCAATGTTTGAAGCATCCATGTTGAGTC
TGATGTCACTGGAGAGTATGGTGAATGGGTCAGGAATAATGGATGATTTG
TTCCAGGACGGGAGGAAGTCAATCCACCATTTGATGTCTGCACGTGCCTC
GCTGTTTAAATTATTTGATGATGCAATTTTGTGACTGATGTTGACGTGTG
ACGCGACCAGGTATAACAACCTTGCAAGCAAATGAGAGTTACCCAATTAG
AGATAACAGTTCTTTTTTAGTACATTTTCGACGTGATGTCCAGAATGGCA
GTGAATCTATCAGTTCAATATACTTATCCTCAGGTATGCGAATAATTTGC
TCTGCTGAATCTATTTCAATCCCCAAGTAGGTTATCTGACGTGAAAGGCC
TTCAGTCTTATCATCCGCAGTTGGGATTCCGAGGTGATGAAAAGCTGATA
GCACAATTCCAATCTCATTGTTGGCTATTGATGTTGTGGGTTGATGAACA
AATAGGAAATCGTCAGAGTAATGTGTCGATTCAGTAAGATCGTATTTATT
CTGAAGGATCCAATGTACTGTGTCTGCAAATGATGTAAATATTGCTGGTG
ATGAACGTAATCCAAAAGGTAAGCGAGTGTCGACAAAGTACATGTCCTGC
CAGTGAATGCCAAGTAATACCCATTGGGATGGATGGACGGGAAGGAGGCG
GAATGCGTGCTGGATGTCAATTTTTGTCATCAAACAGTCCTTTCCCATTT
TATATACAAGNCCCCGCCAGCGAATGCCAAGTAATACCCATTGGGATGGA
TGGACGGGAAGGAGGCGGAATGCGTGCTGGATGTCAATTTTTGTCATCAA
ACAGTTCTTTCCCATTTTATATACAAGTTCTGTAGCCTGGTCAAAGCTAG
CATATTTGACTAGGAAGTCCTCCTTGGGGATGCCTTAATTGACTCGCCAA
GAAGTTGGGAAAGGTCCATAATTAGTCGTCTTGttccatcttttttattt
ggcgaGC Coding sequence (CDS) from alignment at sc0001476:43218..44224 >TCONS_00036518 ID=TCONS_00036518|Name=TCONS_00036518|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0001476:43218..44224 (Clytia hemisphaerica)
TTACCCAATTAGAGATAACAGTTCTTTTTTAGTACATTTTCGACGTGATG
TCCAGAATGGCAGTGAATCTATCAGTTCAATATACTTATCCTCAGGTATG
CGAATAATTTGCTCTGCTGAATCTATTTCAATCCCCAAGTAGGTTATCTG
ACGTGAAAGGCCTTCAGTCTTATCATCCGCAGTTGGGATTCCGAGGTGAT
GAAAAGCTGATAGCACAATTCCAATCTCATTGTTGGCTATTGATGTTGTG
GGTTGATGAACAAATAGGAAATCGTCAGAGTAATGTGTCGATTCAGTAAG
ATCGTATTTATTCTGAAGGATCCAATGTACTGTGTCTGCAAATGATGTAA
ATATTGCTGGTGATGAACGTAATCCAAAAGGTAAGCGAGTGTCGACAAAG
TACATGTCCTGCCAGTGAATGCCAAGTAATACCCATTGGGATGGATGGAC
GGGAAGGAGGCGGAATGCGTGCTGGATGTCAATTTTTGTCATCAAACAGT
CCTTTCCCATTTTATATACAAGNCCCCGCCAGCGAATGCCAAGTAATACC
CATTGGGATGGATGGACGGGAAGGAGGCGGAATGCGTGCTGGATGTCAAT
TTTTGTCATCAAACAGTTCTTTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036518-exon-sc0001476-1491911889:43218..44224 | TCONS_00036518-exon-sc0001476-1491911889:43218..44224 | Clytia hemisphaerica | exon |
| TCONS_00036518-exon-sc0001476-1510915933:43218..44224 | TCONS_00036518-exon-sc0001476-1510915933:43218..44224 | Clytia hemisphaerica | exon |
| TCONS_00036518-exon-sc0001476-1575043694:43218..44224 | TCONS_00036518-exon-sc0001476-1575043694:43218..44224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001476 | supercontig | sc0001476:43218..44224 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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