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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036463 ID=TCONS_00036463|Name=TCONS_00036463|organism=Clytia hemisphaerica|type=transcript|length=1389bp
AAAATGTACATCGGATATTTAAAGGCTGGCATGTTTaacttgaaaatcat
tttatttGAAGTTGACACCACACGTGGAGGAATATACATACAagacagaa
aaaatattttaaagaACTAAGATGAAGAGCACGAATTCAAGAAGCTCAAC
ACAAAAGAATATTCTCACCCTCTTGGTAACCATGGTGATAATGGCAACGC
TGGTCGATTCGTTGCCAAGGAGATTGATTGGCACCGCTGATAACCCTTGC
AGAACTATCCCCAAAAATGGTGAAAGCACATGTCTACCAAATAACATCTA
TGGGATGGAACTTCCAggctttaaatgttcttatgacTCAAAACTTAAAT
CGTGCATTTTGAAATGCTCAAAACCCTGCAATGACATTATGAAACTTTTT
CGAAAGCTCATCCATGAAAAAAAGATCGATAAAAGGCTGCTGTAAAAAgt
catttagaaaaaaatatttagatgaattatatatttctttttcaaaaaaa
cagaaaaattagaTGTACTTTATAAAATACCATTTTATTGTAATTTTAGG
CACTTTCACCACATTATTTCTAGAAGTTTTATTTATGTATAATATTGATG
ACttgcttttttgtaaaaataaaaattttatatataggTATTGAAGATAT
ATTTGGTTACTAGtcctagtttttttttaattttacccCCATAGTCAAGT
AGAacattatttatattttttatatgaaacttatttaaaaagtgaaaatg
ataTCTAGAACCTTAATAATTAAAACGTCTCAGAACCATGTGTTATATTA
CCAACAAAATTCACAATCCTTTAAAACATGGGGATGTATCAGAGACCCGG
TAAGAAGACCCTTGCataactgaaaaatttggcCGAAGTTTTGTCTCCGG
TTgggaattgactttgattttatccccatttacAAATCAATGGAGAAAAC
ACGGTTATTTGAGcctgggaacaatagaatttctatccatATTGagcttt
tgatagaaatttttatccctacctgtgggaaaaagttcatCAGGGCNTGT
GACCTGAGAGAATATGAGTTCTCTTATATCGGCCAAGTCTCGTGATTATT
CTTTATGACATAACTTTTGCGTTATggataatatttaaaatctgatgggt
GGTGCCTTCAAATATGGCAGAACAGCAAAACTTTACTACAATATGAGTTA
GATTAATATTGTGGGTTGCGGGGTATATTGAGATCATAGAGGgcttttta
tattttctctGTATATATTAATGgcttttgtctttgttttcaAGTATTCA
ATCAAAAAAAGTATGGGATTTCTCGGTTTTTGGGCCGTTTCAAAGCCAGT
TAGTTGTTGGTGTCAGTTTGAGCTTAACAGTAATGTAGC Run BLAST on NCBI protein sequence of TCONS_00036463-protein >TCONS_00036463-protein ID=TCONS_00036463-protein|Name=TCONS_00036463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MKSTNSRSSTQKNILTLLVTMVIMATLVDSLPRRLIGTADNPCRTIPKNG
ESTCLPNNIYGMELPGFKCSYDSKLKSCILKCSKPCNDIMKLFRKLIHEK
KIDKRLL Run BLAST on NCBI transcript from alignment at sc0001464:12917..17250+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036463 ID=TCONS_00036463|Name=TCONS_00036463|organism=Clytia hemisphaerica|type=transcript|length=4334bp|location=Sequence derived from alignment at sc0001464:12917..17250+ (Clytia hemisphaerica)
AAAATGTACATCGGATATTTAAAGGCTGGCATGTTTaacttgaaaatcat
tttatttGAAGTTGACACCACACGTGGAGGAATATACATACAagacagaa
aaaatattttaaaggtaagattcttttaatttaccATAACTGCAGAGAAC
GACGTCAACTTTACCTATTGGTAACAACGCCTTTGTTTCATTGATccata
aaaaacattttgccgGATGAGGAACTTAAAGGAGTAAAGGaactaaatat
ttttgttgGGGGTGATTTCAGACTCCAGCTTGGAGCCAAGAAATCGAATC
TTTATTCTTTTGTAATCTAATGTACTTTTCTGTGGGAATTACAATTAATA
AATAGTTAGAGGGAGTTTAGATGATTTAGGGATAAGAGTTTAAGGGCGGG
GCCACATTATTATATTTGAATTAAGATCTAAGTTTGCTTTGATTGTGATT
TAACATAAAGTTGTTTGTACAGGCCTGTAAACGGGGTGGAGAATTTTTAT
TCAGAGCCTGGTTGATGNGTTTGACATAAAGTTGTTTGTACAGGCCTGTA
AACGGGGTGGAGAATCTTTTATTCAGAGCCTGGTTGATGTTTTAATTAAA
CATGCCATGATTTAAGGGCACGATAAAACTTGATGTATTTAAAGCCTCag
tatactttttattttaaaagtcACGGTGAAATTATTCTGTGAAGGGGTTT
TCCTTAAGGCCCCTAAGTATCAGGGTTTTCCTGTATAAGGGCGCTATCCT
GTTCGTAgtgtttgaatttgaatttacaTCTCATTGACAATTCCTTACAT
TTTATGATTTATTTGCTAAAGAAAATATCGCAGTCATTCATTGaccagaa
aaattaaaaaaatgaaccGAGGAGGAATCAATCAGACAGGCGTGGTTGAA
AAAGCTTCAGCAGAACGTTGAGGGACATTTTGAGGCGATTTATTAtgtag
cctatttcataggctTCGTGTTTTTAGTAAATGATATTCATTACAGTAAT
GAAACAGAAAATCAATTCTTTCAATGTCTTTCTTGAAGGGAAATCTGCAC
AGATTTatgcattttgatagaaaatagCATGTTACAACAGATGCATGAAT
CCTATGCAATAGGCTTATTGGGGATGATTCTTGTCAGCATTCTAACCAAT
ATTATAGCCCGCACACTAACAAAAATCAAGACGAATTATTCAGGAAGGGG
TTAAAAACACATTTTGATGGTAACaatcgaacaaaaaaaaaacctttaaa
aaaagggTGTGGTCTTTTCCTTGTACACTCAATATCAATTGACCAATAGA
CGCCAAATTTTacttctttgttgtttttctgaCAAAGTGTCTGGGAATGA
CAGAAATTGCATCATACTGCTTACTCAGCAATTTGAATCAAAAGAATATA
CTTTGAATGAAgttgaaaataattgaatatCGTTTTGATGACGCTGAATG
CTATTAATCAACGACAATATTTGCACAAAAATTTAAGAGGACCATGATAA
AGTAGCGCGTCTGGGTTAACAATAAGAAATTCCTGAAAAATTTATTCCCt
agaaaaatttgtaaatttgaaaaatccctatcAATAAGTAATGAAAACAA
ACGGGACAAAAAACGgatattgtttattttgtttgttaCCGCAATATTAA
ATTGCAAGAAACCGCAAAAGTCATTACATTTTATGTGTATGGTCCATTTG
GAAGGCTTGCCCAAACATGtgtctttttgatttgatgCTTGAGTGACATA
AGGTTTAATCTAAGGTAGGAAATTGTGGCCGCTAGGCCCCTGGGGTTTGA
GATGTACTAATTTCCTATCGATATGGTGTTCGGGTGTTACTTGCAAACTA
ACagtcttctttctttttaacatcATCTTTCCTCTATTGTGGCAAAAACT
AGCTACCCCTCCATATCGTCAGAGACAACTCTATATCTCTTTTCATAAGC
TTTGATGGAAAATATTACTGAATTTTGAAGGAACATGAAATTAAgctttt
aagattttaggggaAAACGGTTCATGTATTTTTGAAGTAAAGtctgtttt
gtatttttgaaggaaaatctatttatttaattttgaagTGAAGTCTGttt
atgtatttttaaaggaaaatatcaTTATGTGtcttgaagaaaattttttg
atgcaATCTTAAGAAAAGGTGTTGTCTAAATTGCACCattaaaattggtc
aaaattgaccttGTTTTACGCTACGGTTTCCTTATTAAATTTATTGACAG
AGAAAACTTTTACGGTTTTTTAATTAAGTGTTTCCGGCCAAAACAAGAGG
TATTACTTCTGCTAATGCATTTCAAATGGGCCTGTTTTTAGAtgattttt
ttaagatgaaCTAATTTAGAGTACAGAATATAGAATGCTTCAGTTCTTTG
TGTCCAGTGGAATCGATAGTGCATACACGGAAATGTttccatattttgaa
aatggtattaGTTATAGGAAAGTATTTATTCCCGAAAAGCACATCCTTAC
TAGGAATATAAGATGTTTTTCGGGTCACATATTTTGGTGTGATGCATAAA
GTTTTAATTGGTGATTTTAAGCAATGTGCTTTAGACCATGGGGAGCACCA
TGCTATCCTTATTAGGAGAACTTGATGAAGATGTTATTCACTGTCACTGA
GTTTCaatctcttttattttttgaagctGTATAATAATGTTGTGACCTGA
GAGAATATGAGTTCTCTTATATCGGCCAAGTCTCGTGATTATTCTTTATG
ACATAACTTTTGCGTTATggataaaatttaaaatctgatgggtGGTGCCT
TCAAATATGGCAGAACAGCAAAACTTTACTACAATATGAGTTAGATTAAT
ATTGTGGGTTGCGTGGTATATTGAGATCATAGAGGgctttttatattttc
tctGTATATATTAATGGCTTTTGGCTTTGTTTTCAAGTATTCAATCAAAA
AAAGTATGGGATTTCTCGGTTTTTGGGCCGTTTCAAAGCCAGTTAGTTGT
TGGTGTCAGTTTGAGCTTAACAGTAATGTAGCATTTcccttttcttttgt
tctttttagaACTAAGATGAAGAGCACGAATTCAAGAAGCTCAACACAAA
AGAATATTCTCACCCTCTTGGTAACCATGGTGATAATGGCAACGCTGGTC
GATTCGTTGCCAAGGAGATTGATTGGCACCGCTGATAACCCTTGCAGAAC
TATCCCCAAAAATGGTGAAAGCACATGTCTACCAAATAACATCTATGGGA
TGGAACTTCCAggctttaaatgttcttatgacTCAAAACTTAAATCGTGC
ATTTTGAAATGCTCAAAACCCTGCAATGACATTATGAAACTTTTTCGAAA
GCTCATCCATGAAAAAAAGATCGATAAAAGGCTGCTGTAAAAAgtcattt
agaaaaaaatatttagatgaattatatatttctttttcaaaaaaacagaa
aaattagaTGTACTTTATAAAATACCATTTTATTGTAATTTTAGGCACTT
TCACCACATTATTTCTAGAAGTTTTATTTATGTATAATATTGATGACttg
cttttttgtaaaaataaaaattttatatataggTATTGAAGATATATTTG
GTTACTAGtcctagtttttttttaattttacccCCATAGTCAAGTAGAac
attatttatattttttatatgaaacttatttaaaaagtgaaaatgataTC
TAGAACCTTAATAATTAAAACGTCTCAGAACCATGTGTTATATTACCAAC
AAAATTCACAATCCTTTAAAACATGGGGATGTATCAGAGACCCGGTAAGA
AGACCCTTGCataactgaaaaatttggcCGAAGTTTTGTCTCCGGTTggg
aattgactttgattttatccccatttacAAATCAATGGAGAAAACACGGT
TATTTGAGcctgggaacaatagaatttctatccatATTGagcttttgata
gaaatttttatccctacctgtgggaaaaagttcatCAGGGCNTGTGACCT
GAGAGAATATGAGTTCTCTTATATCGGCCAAGTCTCGTGATTATTCTTTA
TGACATAACTTTTGCGTTATggataatatttaaaatctgatgggtGGTGC
CTTCAAATATGGCAGAACAGCAAAACTTTACTACAATATGAGTTAGATTA
ATATTGTGGGTTGCGGGGTATATTGAGATCATAGAGGgctttttatattt
tctctGTATATATTAATGgcttttgtctttgttttcaAGTATTCAATCAA
AAAAAGTATGGGATTTCTCGGTTTTTGGGCCGTTTCAAAGCCAGTTAGTT
GTTGGTGTCAGTTTGAGCTTAACAGTAATGTAGC Coding sequence (CDS) from alignment at sc0001464:12917..17250+ >TCONS_00036463 ID=TCONS_00036463|Name=TCONS_00036463|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0001464:12917..17250+ (Clytia hemisphaerica)
ATGAAGAGCACGAATTCAAGAAGCTCAACACAAAAGAATATTCTCACCCT
CTTGGTAACCATGGTGATAATGGCAACGCTGGTCGATTCGTTGCCAAGGA
GATTGATTGGCACCGCTGATAACCCTTGCAGAACTATCCCCAAAAATGGT
GAAAGCACATGTCTACCAAATAACATCTATGGGATGGAACTTCCAggctt
taaatgttcttatgacTCAAAACTTAAATCGTGCATTTTGAAATGCTCAA
AACCCTGCAATGACATTATGAAACTTTTTCGAAAGCTCATCCATGAAAAA
AAGATCGATAAAAGGCTGCTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036463-exon-sc0001464-1491911889:12917..13030 | TCONS_00036463-exon-sc0001464-1491911889:12917..13030 | Clytia hemisphaerica | exon |
| TCONS_00036463-exon-sc0001464-1510915933:12917..13030 | TCONS_00036463-exon-sc0001464-1510915933:12917..13030 | Clytia hemisphaerica | exon |
| TCONS_00036463-exon-sc0001464-1575043694:12917..13030 | TCONS_00036463-exon-sc0001464-1575043694:12917..13030 | Clytia hemisphaerica | exon |
| TCONS_00036463-exon-sc0001464-1491911889:15976..17250 | TCONS_00036463-exon-sc0001464-1491911889:15976..17250 | Clytia hemisphaerica | exon |
| TCONS_00036463-exon-sc0001464-1510915933:15976..17250 | TCONS_00036463-exon-sc0001464-1510915933:15976..17250 | Clytia hemisphaerica | exon |
| TCONS_00036463-exon-sc0001464-1575043694:15976..17250 | TCONS_00036463-exon-sc0001464-1575043694:15976..17250 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001464 | supercontig | sc0001464:12917..17250 + |
Blast
The following BLAST results are available for this feature:
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