TCONS_00036462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036462
Unique NameTCONS_00036462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036462 ID=TCONS_00036462|Name=TCONS_00036462|organism=Clytia hemisphaerica|type=transcript|length=477bp
AACCACGGCGGCAAAAAATGGCCTTTTTTCTCCCACTCGCTCAGCAACCT
AATACAACTTGCGGCATTTTCGACCACTTTGTTGATCATTATACACTTTT
TGTTCCACCATCAACCTTTATATgaatttccaaaataaattccaaaaaaa
tttagaatatagaaaaaagaattgtcacgtgatagctgatgacgtcatcg
aatttagaacgaaaaaataaaaattcagttAGCTCTTTGGTAGTACGACC
ATTCGATAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTACGACCATTCGATAGCTCTCAATGAGTAGTGCtcgaaaatgg
ggtcacttgtTATCGAGACCCTTCTGAAACtcgaaaaatttagattttcg
tTTTGCCAATATATGGTAAAAATCAAC
Run BLAST on NCBI

transcript from alignment at sc0001463:48663..49139

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036462 ID=TCONS_00036462|Name=TCONS_00036462|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0001463:48663..49139 (Clytia hemisphaerica)
GTTGATTTTTACCATATATTGGCAAAacgaaaatctaaatttttcgaGTT
TCAGAAGGGTCTCGATAacaagtgaccccattttcgaGCACTACTCATTG
AGAGCTATCGAATGGTCGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAGCTATCGAATGGTCGTACTACCAAAGAGCTaac
tgaatttttattttttcgttctaaattcgatgacgtcatcagctatcacg
tgacaattcttttttctatattctaaatttttttggaatttattttggaa
attcATATAAAGGTTGATGGTGGAACAAAAAGTGTATAATGATCAACAAA
GTGGTCGAAAATGCCGCAAGTTGTATTAGGTTGCTGAGCGAGTGGGAGAA
AAAAGGCCATTTTTTGCCGCCGTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021490XLOC_021490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036462-exon-sc0001463-1491911889:48663..49139TCONS_00036462-exon-sc0001463-1491911889:48663..49139Clytia hemisphaericaexon
TCONS_00036462-exon-sc0001463-1510915933:48663..49139TCONS_00036462-exon-sc0001463-1510915933:48663..49139Clytia hemisphaericaexon
TCONS_00036462-exon-sc0001463-1575043694:48663..49139TCONS_00036462-exon-sc0001463-1575043694:48663..49139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001463supercontigsc0001463:48663..49139 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.243668	0.18251	0	0	3.5706	2.00194	9.6955	11.3355	4.67675	4.51801	1.43048	3.21922	0.847069	0	0.437983	0	0.0526808	0.23411	1.8274	1.20255	0	0.0876443	0	0.264678	0.14213	0	2.72247	1.14982	0	0.1497
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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