TCONS_00036454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036454
Unique NameTCONS_00036454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036454 ID=TCONS_00036454|Name=TCONS_00036454|organism=Clytia hemisphaerica|type=transcript|length=833bp
gactttctcgccagaactttaaatcttgaaaaacgttaaaataaccaaaa
ttctcaatatattatgaccttaattgCAGATTCTTACCACACTACTAGTA
ATTTCCGAATCACAGGAGTGGCGACGGACCATGCTGGTGTATATACATGT
CTTGCGTCCAACAGTTTGGGGAATGTCAGCTTTGCAACAACTGTTGATGT
ACTATATCCCCCTACCATTATTGATTTCCCACCTGTTGAAATTACGGCAA
CCGAATATGAAAGAAACCTCAAGATTAATTGTACGGCGACCGGTAATCCA
CAACCGGATATCGATTGGTATTTCAACGGAACCCTTTACATTGTGCCGGG
AGACGGGAGGGTGGTGAGTGATGAAACCAAATTATCAGACAGCTTGACAA
CCTATCATTCGCTGTTGTTTACGACCGTGCAGTTAGAAGATTTTGGAGAG
TGGACATGCGAAGCCAAAAACACACTGGCAGGAAATATTGCTGCTATGGA
TACCAATAAGACGTTAATAAGTATCATTTATAATTTAACATTCGCACGTC
CTGATCACCCTCAAGAATATTACTACGTCAACGAATCAACTGACGTCTCC
CTTTCGTGTCGCGTCAAATCGTATCCTGCTGCAACGGTGACGTGGAGTGT
CGCTACAGTTGACGTACGATACACGTTCGGTGACGACGTCATTGAAAACA
CGGCAGAATATGCATTGGTAGAACGTGCATGGAATATCACCAACGTCAAC
AGAACGGATGCTGgaaattatcaatgttttgCAGATTCGGGATTGGAACA
GGGAAATATCTCAACTGTCCTTGTCGTCTACTG
Run BLAST on NCBI

protein sequence of TCONS_00036454-protein

>TCONS_00036454-protein ID=TCONS_00036454-protein|Name=TCONS_00036454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MTLIADSYHTTSNFRITGVATDHAGVYTCLASNSLGNVSFATTVDVLYPP
TIIDFPPVEITATEYERNLKINCTATGNPQPDIDWYFNGTLYIVPGDGRV
VSDETKLSDSLTTYHSLLFTTVQLEDFGEWTCEAKNTLAGNIAAMDTNKT
LISIIYNLTFARPDHPQEYYYVNESTDVSLSCRVKSYPAATVTWSVATVD
VRYTFGDDVIENTAEYALVERAWNITNVNRTDAGNYQCFADSGLEQGNIS
TVLVVY
Run BLAST on NCBI

transcript from alignment at sc0001463:17714..19155+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036454 ID=TCONS_00036454|Name=TCONS_00036454|organism=Clytia hemisphaerica|type=transcript|length=1442bp|location=Sequence derived from alignment at sc0001463:17714..19155+ (Clytia hemisphaerica)
gactttctcgccagaactttaaatcttgaaaaacgttaaaataaccaaaa
ttctcaatatattatgaccttaattgCAGATTCTTACCACACTACTAGTA
ATTTCCGAATCACAGGAGTGGCGACGGACCATGCTGGTGTATATACATGT
CTTGCGTCCAACAGTTTGGGGAATGTCAGCTTTGCAACAACTGTTGATGT
ACTATGTAAGTTCATCTTCTTCATTTGTTTTCATACTCATgactttttgc
tgtgaaaatAAGCTTTTATGCAATAATatgataccttatcggggaaaact
tcgtcggggaaaagtgacgaatattttccccgacgaaaattctCCCCGGC
CTTCATgtgtttaccaactaccagcaagtgacgaaaattttccccgacga
agttttccccgacgaagttttccccgataaggtatataatAATTGACCTT
GAAAAGCTTTGATGTCCTTCTTCCAAAAAGCAGTCCCGCTTTAAGTAGTA
TgatttttctattcattttctATCCACAGATCCCCCTACCATTATTGATT
TCCCACCTGTTGAAATTACGGCAACCGAATATGAAAGAAACCTCAAGATT
AATTGTACGGCGACCGGTAATCCACAACCGGATATCGATTGGTATTTCAA
CGGAACCCTTTACATTGTGCCGGGAGACGGGAGGGTGGTGAGTGATGAAA
CCAAATTATCAGACAGCTTGACAACCTATCATTCGCTGTTGTTTACGACC
GTGCAGTTAGAAGATTTTGGAGAGTGGACATGCGAAGCCAAAAACACACT
GGCAGGAAATATTGCTGCTATGGATACCAATAAGACGTTAATAAGTATCA
TTTGTAAGTTGTGATAATGTTTACAATTCCATTCTCAGATGAAATAGTAA
GTCTTTGTTATTAAGGGCCTTACGCCTACAGCGTATTAAGAGCGgtttaa
aatttcgaaatattAAAGAGATAATGTTTCTTTTGTCTGTCTTTTAAATG
CCTTTTATTCTAGCTCTACTAGATACCGATGTCTGGATTGATGTGTCAGA
TTTGACAATATTACAAAGACTAGACAAAAAAATGGTTAATTATGATGATT
TAGGTAAATGTGTTCAATGAAACTTTTCGTTACTTCAGATAATTTAACAT
TCGCACGTCCTGATCACCCTCAAGAATATTACTACGTCAACGAATCAACT
GACGTCTCCCTTTCGTGTCGCGTCAAATCGTATCCTGCTGCAACGGTGAC
GTGGAGTGTCGCTACAGTTGACGTACGATACACGTTCGGTGACGACGTCA
TTGAAAACACGGCAGAATATGCATTGGTAGAACGTGCATGGAATATCACC
AACGTCAACAGAACGGATGCTGgaaattatcaatgttttgCAGATTCGGG
ATTGGAACAGGGAAATATCTCAACTGTCCTTGTCGTCTACTG

Coding sequence (CDS) from alignment at sc0001463:17714..19155+

>TCONS_00036454 ID=TCONS_00036454|Name=TCONS_00036454|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0001463:17714..19155+ (Clytia hemisphaerica)
atgaccttaattgCAGATTCTTACCACACTACTAGTAATTTCCGAATCAC
AGGAGTGGCGACGGACCATGCTGGTGTATATACATGTCTTGCGTCCAACA
GTTTGGGGAATGTCAGCTTTGCAACAACTGTTGATGTACTATATCCCCCT
ACCATTATTGATTTCCCACCTGTTGAAATTACGGCAACCGAATATGAAAG
AAACCTCAAGATTAATTGTACGGCGACCGGTAATCCACAACCGGATATCG
ATTGGTATTTCAACGGAACCCTTTACATTGTGCCGGGAGACGGGAGGGTG
GTGAGTGATGAAACCAAATTATCAGACAGCTTGACAACCTATCATTCGCT
GTTGTTTACGACCGTGCAGTTAGAAGATTTTGGAGAGTGGACATGCGAAG
CCAAAAACACACTGGCAGGAAATATTGCTGCTATGGATACCAATAAGACG
TTAATAAGTATCATTTATAATTTAACATTCGCACGTCCTGATCACCCTCA
AGAATATTACTACGTCAACGAATCAACTGACGTCTCCCTTTCGTGTCGCG
TCAAATCGTATCCTGCTGCAACGGTGACGTGGAGTGTCGCTACAGTTGAC
GTACGATACACGTTCGGTGACGACGTCATTGAAAACACGGCAGAATATGC
ATTGGTAGAACGTGCATGGAATATCACCAACGTCAACAGAACGGATGCTG
gaaattatcaatgttttgCAGATTCGGGATTGGAACAGGGAAATATCTCA
ACTGTCCTTGTCGTCTACatgaccttaattgCAGATTCTTACCACACTAC
TAGTAATTTCCGAATCACAGGAGTGGCGACGGACCATGCTGGTGTATATA
CATGTCTTGCGTCCAACAGTTTGGGGAATGTCAGCTTTGCAACAACTGTT
GATGTACTATATCCCCCTACCATTATTGATTTCCCACCTGTTGAAATTAC
GGCAACCGAATATGAAAGAAACCTCAAGATTAATTGTACGGCGACCGGTA
ATCCACAACCGGATATCGATTGGTATTTCAACGGAACCCTTTACATTGTG
CCGGGAGACGGGAGGGTGGTGAGTGATGAAACCAAATTATCAGACAGCTT
GACAACCTATCATTCGCTGTTGTTTACGACCGTGCAGTTAGAAGATTTTG
GAGAGTGGACATGCGAAGCCAAAAACACACTGGCAGGAAATATTGCTGCT
ATGGATACCAATAAGACGTTAATAAGTATCATTTATAATTTAACATTCGC
ACGTCCTGATCACCCTCAAGAATATTACTACGTCAACGAATCAACTGACG
TCTCCCTTTCGTGTCGCGTCAAATCGTATCCTGCTGCAACGGTGACGTGG
AGTGTCGCTACAGTTGACGTACGATACACGTTCGGTGACGACGTCATTGA
AAACACGGCAGAATATGCATTGGTAGAACGTGCATGGAATATCACCAACG
TCAACAGAACGGATGCTGgaaattatcaatgttttgCAGATTCGGGATTG
GAACAGGGAAATATCTCAACTGTCCTTGTCGTCTACatgaccttaattgC
AGATTCTTACCACACTACTAGTAATTTCCGAATCACAGGAGTGGCGACGG
ACCATGCTGGTGTATATACATGTCTTGCGTCCAACAGTTTGGGGAATGTC
AGCTTTGCAACAACTGTTGATGTACTATATCCCCCTACCATTATTGATTT
CCCACCTGTTGAAATTACGGCAACCGAATATGAAAGAAACCTCAAGATTA
ATTGTACGGCGACCGGTAATCCACAACCGGATATCGATTGGTATTTCAAC
GGAACCCTTTACATTGTGCCGGGAGACGGGAGGGTGGTGAGTGATGAAAC
CAAATTATCAGACAGCTTGACAACCTATCATTCGCTGTTGTTTACGACCG
TGCAGTTAGAAGATTTTGGAGAGTGGACATGCGAAGCCAAAAACACACTG
GCAGGAAATATTGCTGCTATGGATACCAATAAGACGTTAATAAGTATCAT
TTATAATTTAACATTCGCACGTCCTGATCACCCTCAAGAATATTACTACG
TCAACGAATCAACTGACGTCTCCCTTTCGTGTCGCGTCAAATCGTATCCT
GCTGCAACGGTGACGTGGAGTGTCGCTACAGTTGACGTACGATACACGTT
CGGTGACGACGTCATTGAAAACACGGCAGAATATGCATTGGTAGAACGTG
CATGGAATATCACCAACGTCAACAGAACGGATGCTGgaaattatcaatgt
tttgCAGATTCGGGATTGGAACAGGGAAATATCTCAACTGTCCTTGTCGT
CTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021486XLOC_021486Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036454-proteinTCONS_00036454-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036454-exon-sc0001463-1491911889:17714..17918TCONS_00036454-exon-sc0001463-1491911889:17714..17918Clytia hemisphaericaexon
TCONS_00036454-exon-sc0001463-1510915933:17714..17918TCONS_00036454-exon-sc0001463-1510915933:17714..17918Clytia hemisphaericaexon
TCONS_00036454-exon-sc0001463-1575043694:17714..17918TCONS_00036454-exon-sc0001463-1575043694:17714..17918Clytia hemisphaericaexon
TCONS_00036454-exon-sc0001463-1491911889:18243..18566TCONS_00036454-exon-sc0001463-1491911889:18243..18566Clytia hemisphaericaexon
TCONS_00036454-exon-sc0001463-1510915933:18243..18566TCONS_00036454-exon-sc0001463-1510915933:18243..18566Clytia hemisphaericaexon
TCONS_00036454-exon-sc0001463-1575043694:18243..18566TCONS_00036454-exon-sc0001463-1575043694:18243..18566Clytia hemisphaericaexon
TCONS_00036454-exon-sc0001463-1491911889:18852..19155TCONS_00036454-exon-sc0001463-1491911889:18852..19155Clytia hemisphaericaexon
TCONS_00036454-exon-sc0001463-1510915933:18852..19155TCONS_00036454-exon-sc0001463-1510915933:18852..19155Clytia hemisphaericaexon
TCONS_00036454-exon-sc0001463-1575043694:18852..19155TCONS_00036454-exon-sc0001463-1575043694:18852..19155Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001463supercontigsc0001463:17714..19155 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337062	0.64784	0.6366	0.0855753	0.525663	0.390565	0.569423	0.592019	1.37691	1.12929	0.750498	1.11515	7.27908	7.14566	1.14424	2.76243	1.21895	0.822509	7.27658	9.48228	3.2557	3.20354	1.65959	1.62598	3.28496	3.44771	0.462102	0.366422	0.167934	0.386666
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003599Ig_sub
IPR003598Ig_sub2
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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