TCONS_00036448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036448
Unique NameTCONS_00036448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036448 ID=TCONS_00036448|Name=TCONS_00036448|organism=Clytia hemisphaerica|type=transcript|length=1175bp
CAGATTCCAATGATTATCTCGCCATGGAGATTGTGGCTGGTTTACTTCGA
TTCCATTACAAGCTGAGTTCCGGTGATGCTCAGAATGTGACCATCTCAAA
ACCATTGAAAGCTAAACAGCCATACAAGTTCTACGTTAGCAGAAACTTTG
GAGATGCCGAACTTCGGTTGGTAGAGTTGCTCCAAGACGTCAAACTTGGA
TTCGAAAACGCCTCTACTCTGATCACACAAGAACATGAAGCACAAATCCC
TTCGCCTATCTTGAGCCTAGGGAAGAAGAGCGATCTGTTCTTAGGTGGTG
TACCATCAGGGAAGAGCGTTCCATCAGCCCTGGCTTCCACAACGTTCAAT
GGTTGTATGGAGGAGTTGAAATATGATTCTCAACGAATGGGATTATGGAA
CTGGAAGGAAGCGAAATCAGTGGCTGGATGCGTCCAAACTGCTCGTGAAC
CAGATGATGGTGCATACACCTTCAATGGTGCCAAATCCTTCGTCAACATC
GTCAACAATGTCAGCCCTCTCACATTTGGTTTACAACGAATCGATCTCAC
CTTCTCAACTCTCGATAAAAATGGTCTACTTTTCTTGGGAATGGATCCGC
CCACCGCCATGGCTGATGGAAATCTCGCTTTCGATGCAACGCCTACCAAT
TTCTACGCCCTACAACTAGAAGATGGCTATCTAGTCAGTTTGTTCGATTT
TGGAGTCGGCTTTGAGCGCGTGGTTCACAACTCCACCGAACTAAGGATTG
GAAATAACGATCGAGTCAATGACGGTCAGGTCCATAATATCACACTTAAA
GCCAAATCAAAGTTCGTGCGAATTTGGATAGATACAACGCGGGAAGGGCC
CAAAGCTGCTGATATCTCTTTAACGTCCGGAAGTGGATTACGTCCGAAAT
TCAAAGTTTCAGAAGCTTACATTGGTGGTTTGCCAATGAGAGGCTTCAAA
CCTCACACCGGTATCACAGATGAGAGTTTCATTGGTTCCATCAAAGATGT
GAACTTGAGAGGTGGAAGTCAAAAGGTCCTCACTGGCTTCAACTACAATG
TCGGATTCAAAGAAGCTGTAAGTTGGGTGGCACAAATTCTTTTACAAAAG
TCCAGACTCTTCTTGGAGGAGTCTTAACGCTGATAAGGCctttgtcgggg
aaaatttGGGAGCGATTAATCACTG
Run BLAST on NCBI

transcript from alignment at sc0001463:1..4679+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036448 ID=TCONS_00036448|Name=TCONS_00036448|organism=Clytia hemisphaerica|type=transcript|length=4679bp|location=Sequence derived from alignment at sc0001463:1..4679+ (Clytia hemisphaerica)
CAGATTCCAATGATTATCTCGCCATGGAGATTGTGGCTGGTTTACTTCGA
TTCCATTACAAGCTGAGTTCCGGTGATGCTCAGAATGTGACCATCTCAAA
ACCATTGAAAGCTAAACAGCCATACAAGTTCTACGTTAGCAGGTACTGCT
TCATCAACCTCGTTTGTGATGATTTGATCACCATAGTAACACTGACTTTA
AATATATCGTCAATGGTTCTTACAGCTCTTCTTGTTTTCACTTCAACCTT
AgttttttcgtttaaattttataaatatgTTTTTTCCTTCTTTAGAAACT
TTGGAGATGCCGAGNAACCATTGAAAGCTAAACAGCCATACAAGTTCTAC
GTTAGCAGGTACTGCTTCATCAACCTCGTTTGTGATGATTTGATCACCAT
AGTAACATTGACTTTAAATCTATCGTCTCTTTTTAAATGGTTCTTACAGC
TCTTCTTGTTTTCACTTCAACCTTAgttttttcgtttaaattttataaat
atgTTTTTCCTTCTTTAGAAACTTTGGAGATGCCGAACTTCGGTTGGTAG
AGTTGCTCCAAGACGTCAAACTTGGATTCGAAAACGCCTCTACTCTGATC
ACACAAGAACATGAAGCACAAATCCCTTCGCCTATCTTGAGCCTAGGGAA
GAAGAGCGATCTGTTCTTAGGTGGTGTACCATCAGGGAAGAGCGTTCCAT
CAGCCCTGGCTTCCACAACGTTCAATGGTTGTATGGAGGAGTTGAAATAT
GATTCTCAACGAATGGGATTATGGAACTGGAAGGTAACAACACTCTTAAA
TATCTTTTAAACTGGCACTTCAAACCCCGTCTATTAAGTATAATTATATT
TAGTATGAAGATGTTTTCTATCATTTGTATTGTAAGCTGTACCGCTTTTT
TCAGATTTCATTGTAACCAGATATTTATAGAGTTAATGTCCAATGAGCAA
CTTTTACTTATATCCACTTTAAACCAATACACAAAAACACCCTTTCTTAT
TCATTCATTTGCAGGAAGCGAAATCAGTTGCCGGGTGTGTCCAAACTGCT
CGTGAACCGGATGATGGTGCATACACCTTCAATGGTGCCAAATCCTTCGT
CAACATCGTCAACAATGTCAGTCCTCTCACATTTGGTTTACAACGAATCG
ATCTCACTTTCTCAACTCTCGATAAAAATGGTAGGTGCTACATCGTAATC
TTTCTAGAAGTGTTACATCGTAATCTTTCTAGAGGTGTTACATCGTAATC
TTTCTAGAGTTGTTACATCGTGATCTTTCTAGAGGTGTTACATCGTAATC
TTTCTAGAGGTGTTGCATCGTAATCTTTCTAGAGGGGTTACATCGTAATC
TTTCTAGAAGCGTTACATCGTAATCTTTATCCTGAAAGTTTAGAATTTGG
AATCTTAAGGTACGCTTGCCAATGCGATTTGAATATTCCCACACGAATTC
CCGTTGTTTCTAAGATTTTGAAAGATGTAATGATAAATAAAGATGACatc
tatccgcagacacgtgtttcgtcCTGCATCGGTGCGGCTCgggtaagcga
gcatagactgctgttgtcaccagagtgTTCAAAACACTAAGTGTTGAGAT
TCGCATAATCACTTGTGATGAACGGAGAAGCAGTCTATAGACTGCTCAAA
GAACCGAAGTTCTGAGCGTAATACATCGAcaaatttcttctatttttctc
TACTAGGTCTACTTTTCTTGGGAATGGATCCGCCCACCGCCATGACTGAT
GGAAATCTGGCTTTCGATGCAACGCCTACCAATTTCTACGCCCTTCAACT
AGAAGATGGCTATCTAGTCAGTTTGTTCGATTTTGGAGTCGGCTTTGAGC
GCGTGGTTCACAACTCCACCGAACTAAGGATTGGAAATAACGGTCGAGTC
AATGACGGTCAGATCCATAATATCACACTTAAAGCCAAATCAAAGTTCGT
GCGAATTTGGATAGATACAACACGGGAAGGGCCCAAAGCTGCTGATATCT
CTTTAACGTCTGGAAGTGGATTACGTCCGAAATTCAAAGTTTCAGAAGCT
TACATTGGTGGTTTGCCAATGAGAGGCTTCAAACCTCACACGTAAGTGGA
TGGTGCTTCTCTAtaacattcatctaacgttatatgaacgttaggGACGT
CAGAtgaacgttatatgaacgttaggGACGCCAGAtgaacgttatatgaa
cgttaggGACGTCACNAACGTTCAATGGTTGTATGGAGGAGTTGAAATAT
GATTCTCAACGAATGGGATTATGGAACTGGAAGGTAACAACACTcttaaa
tatcttttcaacgggtACTTCAAACCCCGTCTATTAAGTTTAATTATATT
TAGTATGAAGATGTTTTTTGTTCTTTGTATTGTAAGCTCAACCGGTTTTT
CCAGATATTTATAGAGTTAATGTCCAATGAGCAACTTTTACTTATAGTCA
CTTTAAACCAATATTCCAATACTTTATTCGTATTTCTGAAGCAAACCGTT
AAACTTCTTCACATAATTTCCTCTCTCCCTTTCAATTTATCTACCTATCT
TCTCACTTGTAATACAAGTGACAcaaaacacccctttcttattcattcat
tcacagGAAGCGAAATCAGTGGCTGGATGCGTCCAAACTGCTCGTGAACC
AGATGATGGTGCATACACCTTCAATGGTGCCAAATCCTTCGTCAACATCG
TCAACAATGTCAGCCCTCTCACATTTGGTTTACAACGAATCGATCTCACC
TTCTCAACTCTCGATAAAAATGGTAGGTGCTACATCGTAATCTTTCTAGA
GGTGTTACATCGTAATCTTTCTATAGGTGCTACATCGTAATCTTTCTAGA
GGTGTTACATCGTAATCTTTCTAGAGGTGCTACATCGTAATCTTTCTAGA
GGTGCTACATCGTAATCTTTCTAGAGGTGTTACATCGTAATCTTTCTAGA
GGTGCTACATCGTAATCTTTCTAGAGGTGTTACATCGTAATCTTTCTAGA
AGCGTTACATCGAATGTTTCTAGAGGTGCTACATCGTAATCTTTCTAGAG
GTGTTACATCGTAATCTTTATCCTGAAAGTTTAGAACTTGGAATCTTAAG
GTACGCTTGCCAATGCGATTTGAATATTCCCACACGAATTCCCGTTGTTT
CTAAGATTTTGAAAGATGTAATGATAAGAAAAGATGACatctatccgcag
acacgtgtttcgtcctgcatcagtgcggctcgggtaagcgagcatagact
gcTGTTGTCACCAGATTGCTCAAAACACTAAGTGTTGAGCTTCGAGCTTG
AACGGAGAAGCAGAGCTTGCTTTTCAACAGATTCTATAGAGTGCTCAAAG
AACCGAAGTTCTGAGCGTAATACATCTGAcaaatttcttctatttttctc
TATATTAGGTCTACTTTTCTTGGGAATGGATCCGCCCACCGCCATGGCTG
ATGGAAATCTCGCTTTCGATGCAACGCCTACCAATTTCTACGCCCTACAA
CTAGAAGATGGCTATCTAGTCAGTTTGTTCGATTTTGGAGTCGGCTTTGA
GCGCGTGGTTCACAACTCCACCGAACTAAGGATTGGAAATAACGATCGAG
TCAATGACGGTCAGGTCCATAATATCACACTTAAAGCCAAATCAAAGTTC
GTGCGAATTTGGATAGATACAACGCGGGAAGGGCCCAAAGCTGCTGATAT
CTCTTTAACGTCCGGAAGTGGATTACGTCCGAAATTCAAAGTTTCAGAAG
CTTACATTGGTGGTTTGCCAATGAGAGGCTTCAAACCTCACACGTAAGTG
GGTGGTGCTTCTCTAtaacattcatctaacgttatatgaacgttaggGAC
GTCAGAtgaacgttatatgaacgttaggGACGTCAGAtgaacgttatatg
aacgttaggGACGTCACATGAATGTTATTTTGACGTTCTACGTCAGATTT
TAACATTCACTCAGTTCgagattttttatttccttaTGCTAACTTATTGA
TGAGCGAAACTTGAAGCAACGTGGTTAACATTAAAGGCAGGTTCATAGGT
GGCCCGGTATATGGCGGTTCTCAATCTTGAGCTtgtgcttaggcggactg
taaagaTAAAAATAGGATGGAGCAATATTTTCatttgcaaatctgttatt
catttttgtttcccattcttaattatatttttcaactccaaGCAGTTTTT
TTGCTGTGTGAAATTTTTGGGATTTGTGTTCGCCGAAATGGCGAACTCTT
AAgttgctcctagtctacttcacctgaatcagcgtcatcaaaaattatca
gaaagcaaagttcagtcagaagtactAGTCCAtaagacaatttttttgag
tttttgagttCTCCGATTTGATGATTGCTGACGTTGTAGAATCCCATTTC
CGTAGGAGACGAAATATTCTTTCTAAAAGTATCTTCAGTGGATTTTCGAA
TTATTTTCATAGCGGTATCACAGATGAGAGTTTCATTGGTTCCATCAAAG
ATGTGAACTTGAGAGGTGGAAGTCAAAAGGTCCTCACTGGCTTCAACTAC
AATGTCGGATTCAAAGAAGCTGTAAGTTGGGTGGCACAAATTCTTTTACA
AAAGTCCAGACTCTTCTTGGAGGAGTCTTAACGCTGATAAGGCctttgtc
ggggaaaatttGGGAGCGATTAATCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021484XLOC_021484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036448-exon-sc0001463-1491911889:1..142TCONS_00036448-exon-sc0001463-1491911889:1..142Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1510915933:1..142TCONS_00036448-exon-sc0001463-1510915933:1..142Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1575043694:1..142TCONS_00036448-exon-sc0001463-1575043694:1..142Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1491911889:519..783TCONS_00036448-exon-sc0001463-1491911889:519..783Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1510915933:519..783TCONS_00036448-exon-sc0001463-1510915933:519..783Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1575043694:519..783TCONS_00036448-exon-sc0001463-1575043694:519..783Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1491911889:2607..2772TCONS_00036448-exon-sc0001463-1491911889:2607..2772Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1510915933:2607..2772TCONS_00036448-exon-sc0001463-1510915933:2607..2772Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1575043694:2607..2772TCONS_00036448-exon-sc0001463-1575043694:2607..2772Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1491911889:3409..3793TCONS_00036448-exon-sc0001463-1491911889:3409..3793Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1510915933:3409..3793TCONS_00036448-exon-sc0001463-1510915933:3409..3793Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1575043694:3409..3793TCONS_00036448-exon-sc0001463-1575043694:3409..3793Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1491911889:4463..4679TCONS_00036448-exon-sc0001463-1491911889:4463..4679Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1510915933:4463..4679TCONS_00036448-exon-sc0001463-1510915933:4463..4679Clytia hemisphaericaexon
TCONS_00036448-exon-sc0001463-1575043694:4463..4679TCONS_00036448-exon-sc0001463-1575043694:4463..4679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001463supercontigsc0001463:1..4679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87185	0.50363	0.441848	0.0119442	12.6975	9.98193	24.7316	27.8346	1.55968	8.67631	9.3974	2.72902	5.7202	9.64223	3.71754	8.22265	10.0914	8.98408	7.21972	4.3746	28.5606	17.3982	3.89423	9.4124	9.1929	6.88295	1.55407	0.717392	26.7703	40.5362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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