TCONS_00036433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036433
Unique NameTCONS_00036433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036433 ID=TCONS_00036433|Name=TCONS_00036433|organism=Clytia hemisphaerica|type=transcript|length=871bp
ttgaaatactgtttttttatatttatgccTTAATTCTTAGGTTGTTTGGA
GTGGTGAATGGTTAGAAGGTACCGGACGTTCAACAGGAGAGGAAAGAGCA
ATTGTTCAGTTATCTTTCTCGGTTTGGAAATAGTACAAAGTATCAATTAC
CTGAAAgaAGAGAAGAAACACTAACAGAAGCAGTTCTTCACTGGAAcaaa
tccaaaatcaaaaaacttgTACCAGATTTGGTCAAGAGATATTACGAGGT
AACAAGATACGGTAATTTGCTACGTTGAAAGGTTTTTGGATGACATGATA
CTTCATGTGAGAGATGATTGAGCGTATTTATTTGTACGTCAATTGCCAGA
AGGACTCAGTCTTTTCCTAATCTATAATTTNTGTACCAGATTTGGTCAAG
AGATATTACAAGaataaagaaaatttaaaaatgattggTGACTTGCCAGA
CAAACATCCAACTAAAATCATAATGCAATGGAACgatgaaattcaaaaag
aagCATTAGGTTTGAGAAGTAGAGTGGTTCGTTAACCTTCCGACGCTGAA
AAGCTTCTTCTTCTGGTGGAAAAGCTTCACCTTCCACCTGACTATCACAT
AGTTGCTAGCAGATTATCATTCCCCAAGACAATGGATTATGGTAAAGTCT
ATCGGTTGTTAGAGTTTGATAAGCAGGATCAATTACAAGAACTTGATTGA
CTTACCAAAGAGATTAAAGTCGAAGATTTACTGGTGcgacttctttattt
ttgttttattaattgATGCTTAAGGGAGGATTGAATTAGGGCTGTTAGTC
AAATAGGGGGTCAAATTGCTAATTAGCTTGATTTGAAGAAAACTAAGATT
TGAGCTCTTTTTCTGAAGAAG
Run BLAST on NCBI

transcript from alignment at sc0001459:61829..63427-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036433 ID=TCONS_00036433|Name=TCONS_00036433|organism=Clytia hemisphaerica|type=transcript|length=1599bp|location=Sequence derived from alignment at sc0001459:61829..63427- (Clytia hemisphaerica)
TTGAAATACTGTTTTTTTATATTTATGCCTTAATTCTTAGGTTGTTTGGA
GTGGTGAATGGTTAGAAGGTACCGGACGTTCAACAGGAGAGGAAAGAGCA
ATTGTTCAGTTATCTTTCTCGGTTTGGAAATAGTACAAAGTATCAATTAC
CTGAAAGTAAATATTGTTCATTAAGTCAAATATATTTAATTCAAGTACGT
TTCTCCCTTNNNNNNNNNNNNNNNNNNNNNNNNTCGGTTTGGAAATAGTA
CAAAGTATCAATTACCTGAAAGTAAATATTGTTCATTAAGTCAAATATAT
TTAATTCAAGTACGTTTCTCCCTTATGTCACTAATACAGTTGTTCTTTTC
CTTTATTTATTTCTGATTTAAAATTTTTCAGGAAGAGAAGAAACACTAAC
AGAAGCAGTTCTTCACTGGAACAAATCCAAAATCAAAAAACTTGTACCAG
ATTTGGTCAAGAGATATTACGAGGTAACAAGATACGGTAATTTGCTACGT
TGAAAGGTTTTTGGATGACATGATACTTCATGTGAGAGATGATTGAGCGT
ATTTATTTGTACGTCAATTGCCAGAAGGACTCAGTCTTTTCCTAATCTAT
AATTTNTGTACCAGATTTGGTCAAGAGATATTACAAGGTAACAAGATACG
GTAATTTGCTACGTTGAAAGGTTTTTGCATGACATGATACTTCATGTAAG
AGATGATTGAGCGTATTTATTTGTACGTCAATTACCAGAAGGACTCAGTC
TTTTCCTAATCTATAATTTCTTTGGTTTTAGAATAAAGAAAATTTAAAAA
TGATTGGTGACTTGCCAGACAAACATCCAACTAAAATCATAATGCAATGG
AACGATGAAATTCAAAAAGAAGCATTAGGTAACAGTGTTGATATTAACAT
TTGGCGCGTTGTCCTCAATTGAAGACCTTTGCTCAATATGTATTATATAT
CAGTATAAATTATAAAAATCGCTACAAATGTACCGTCCAAGCAGTTAGTC
CAAAACACCATGCCCGTTAGTACATCTTTTGCAGTTTCTACTGGTTTTTA
CAGGCTTTCACTGCACTTGGCTTCACTCTGCTTTACTTCTACCNGTACTG
TCCAAGCAGTTAGTCCAAAACACCATGCCCGTTAGTACATCTTTTGCAGT
TTCTACTGGTTTTTACAGGCTTTCACTGCACTTGGCTTCACTCTGCTTTA
TTTCTACCTTTTGCTCTTTTGTTGTAACTTTTTCTAGGTTTGAGAAGTAG
AGTGGTTCGTTAACCTTCCGACGCTGAAAAGCTTCTTCTTCTGGTGGAAA
AGCTTCACCTTCCACCTGACTATCACATAGTTGCTAGCAGATTATCATTC
CCCAAGACAATGGATTATGGTAAAGTCTATCGGTTGTTAGAGTTTGATAA
GCAGGATCAATTACAAGAACTTGATTGACTTACCAAAGAGATTAAAGTCG
AAGATTTACTGGTGCGACTTCTTTATTTTTGTTTTATTAATTGATGCTTA
AGGGAGGATTGAATTAGGGCTGTTAGTCAAATAGGGGGTCAAATTGCTAA
TTAGCTTGATTTGAAGAAAACTAAGATTTGAGCTCTTTTTCTGAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021471XLOC_021471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036433-exon-sc0001459-1575043694:63272..63427TCONS_00036433-exon-sc0001459-1575043694:63272..63427Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1575043694:62791..63046TCONS_00036433-exon-sc0001459-1575043694:62791..63046Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1575043694:62550..62646TCONS_00036433-exon-sc0001459-1575043694:62550..62646Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1575043694:61829..62190TCONS_00036433-exon-sc0001459-1575043694:61829..62190Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1510915933:63272..63427TCONS_00036433-exon-sc0001459-1510915933:63272..63427Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1510915933:62791..63046TCONS_00036433-exon-sc0001459-1510915933:62791..63046Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1510915933:62550..62646TCONS_00036433-exon-sc0001459-1510915933:62550..62646Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1510915933:61829..62190TCONS_00036433-exon-sc0001459-1510915933:61829..62190Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1491911889:63272..63427TCONS_00036433-exon-sc0001459-1491911889:63272..63427Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1491911889:62791..63046TCONS_00036433-exon-sc0001459-1491911889:62791..63046Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1491911889:62550..62646TCONS_00036433-exon-sc0001459-1491911889:62550..62646Clytia hemisphaericaexon
TCONS_00036433-exon-sc0001459-1491911889:61829..62190TCONS_00036433-exon-sc0001459-1491911889:61829..62190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001459supercontigsc0001459:61829..63427 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77171	0	0.697007	0	1.63999	1.68687	1.06783	0	7.43759	2.16374	1.46397	13.8364	3.24195	0	0	1.34523	0	1.40533	0	0	2.54863	8.50181	0	0	2.04382	0.632013	4.83515	6.98616	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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