TCONS_00036421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036421
Unique NameTCONS_00036421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036421 ID=TCONS_00036421|Name=TCONS_00036421|organism=Clytia hemisphaerica|type=transcript|length=475bp
agtgtacCTAATCTATCTTCGATAGAAggaaaacttttataaatagtGCA
TTATCGaaacattatcaaaatatatctcaaataataataataataataac
tcTTGATTCCACAACTTTTAAATCCAATCAAGCTCTTCAAGTTATCCATA
ACTTTGAAAtaactttgttttgataggCCTTTGATAAACTTACGGCatag
ttatttatttttctaaataaattatttattttgaatattatcTCTCTAGG
AAAACAAACGTTTTTGGCCGACTTTATTTAAGATCTTTTCATCCaagtta
aaaactttttttgaagcaCTCCAAGCTCTTGTTAGTTCTTTTAGCTctct
tgaaaatcaaaatcaagtctTGAAATCAATATCAATGGTATTATATTATG
TTTTTAGTATTTATTTTAGTACGAGGTGTACTCTTTATAAATTATAAACA
GGAATCCTCTATTGTACTTTATACC
Run BLAST on NCBI

transcript from alignment at sc0001458:27857..28331

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036421 ID=TCONS_00036421|Name=TCONS_00036421|organism=Clytia hemisphaerica|type=transcript|length=475bp|location=Sequence derived from alignment at sc0001458:27857..28331 (Clytia hemisphaerica)
GGTATAAAGTACAATAGAGGATTCCTGTTTATAATTTATAAAGAGTACAC
CTCGTACTAAAATAAATACTAAAAACATAATATAATACCATTGATATTGA
TTTCAagacttgattttgattttcaagagAGCTAAAAGAACTAACAAGAG
CTTGGAGtgcttcaaaaaaagtttttaacttGGATGAAAAGATCTTAAAT
AAAGTCGGCCAAAAACGTTTGTTTTCCTAGAGAgataatattcaaaataa
ataatttatttagaaaaataaataactatGCCGTAAGTTTATCAAAGGcc
tatcaaaacaaagttaTTTCAAAGTTATGGATAACTTGAAGAGCTTGATT
GGATTTAAAAGTTGTGGAATCAAgagttattattattattattatttgag
atatattttgataatgtttCGATAATGCactatttataaaagttttccTT
CTATCGAAGATAGATTAGgtacact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021462XLOC_021462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036421-exon-sc0001458-1491911889:27857..28331TCONS_00036421-exon-sc0001458-1491911889:27857..28331Clytia hemisphaericaexon
TCONS_00036421-exon-sc0001458-1510915933:27857..28331TCONS_00036421-exon-sc0001458-1510915933:27857..28331Clytia hemisphaericaexon
TCONS_00036421-exon-sc0001458-1575043694:27857..28331TCONS_00036421-exon-sc0001458-1575043694:27857..28331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001458supercontigsc0001458:27857..28331 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.269565	0.177858	0.436496	0.457698	0.244208	0.601149	0.189199	0.139216	0.967054	0	0	1.02063	0.409144	0.705859	0	0.708989	0.298362	1.01695	2.95449	2.6062	0	0.16782	0	0.255603	0	0.264766	0	0.168883
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top