TCONS_00036406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036406
Unique NameTCONS_00036406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036406 ID=TCONS_00036406|Name=TCONS_00036406|organism=Clytia hemisphaerica|type=transcript|length=435bp
AAACAACCTTAATGCCTTTGGGAGACACTTGACACTTGAGGTAATAGATC
AGTGCATTAAATTGCCCTGACTTGAGAAAGACTTTAAAGGTTGTTTTGAT
TCTTTTCCCAACCCTCTGCCAGTCAGTTTGATTACATATTCTCCATTTGA
ATAGTTGAAGGTTTCATATGTATTGTTGCTCAATCGATTAAGGCAGGATT
GATTGGTAATTGGTGTTGGACCGATTTGATTTGTGTTTGGCTGGCTCCAC
TATTTtgaccagacgtaattaatcgaaccaatcaaacgtttgtcaaactt
aatcgaactttgttgtCCAATTAAATTAATGCTCGACTAAGTTCGGTTGT
CGAACTTTGAttgaatactcacaaattttctaaactataaacaataaagt
tcAATTAAAGAAACCGAccttaatcaaactttttt
Run BLAST on NCBI

transcript from alignment at sc0001454:58021..58455-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036406 ID=TCONS_00036406|Name=TCONS_00036406|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at sc0001454:58021..58455- (Clytia hemisphaerica)
AAACAACCTTAATGCCTTTGGGAGACACTTGACACTTGAGGTAATAGATC
AGTGCATTAAATTGCCCTGACTTGAGAAAGACTTTAAAGGTTGTTTTGAT
TCTTTTCCCAACCCTCTGCCAGTCAGTTTGATTACATATTCTCCATTTGA
ATAGTTGAAGGTTTCATATGTATTGTTGCTCAATCGATTAAGGCAGGATT
GATTGGTAATTGGTGTTGGACCGATTTGATTTGTGTTTGGCTGGCTCCAC
TATTTTGACCAGACGTAATTAATCGAACCAATCAAACGTTTGTCAAACTT
AATCGAACTTTGTTGTCCAATTAAATTAATGCTCGACTAAGTTCGGTTGT
CGAACTTTGATTGAATACTCACAAATTTTCTAAACTATAAACAATAAAGT
TCAATTAAAGAAACCGACCTTAATCAAACTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021448XLOC_021448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036406-exon-sc0001454-1575043694:58021..58455TCONS_00036406-exon-sc0001454-1575043694:58021..58455Clytia hemisphaericaexon
TCONS_00036406-exon-sc0001454-1510915933:58021..58455TCONS_00036406-exon-sc0001454-1510915933:58021..58455Clytia hemisphaericaexon
TCONS_00036406-exon-sc0001454-1491911889:58021..58455TCONS_00036406-exon-sc0001454-1491911889:58021..58455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001454supercontigsc0001454:58021..58455 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02398	0.459244	1.42194	3.13007	0.211698	0.50186	0.201824	0	0.132285	0.327713	0	0.209097	0.104403	0.216848	0.455858	0.28698	0	0.603937	1.335	0.698488	0.91067	0.444193	0	0.181057	0.337087	0.300842	0	0	0.696947	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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