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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036391 ID=TCONS_00036391|Name=TCONS_00036391|organism=Clytia hemisphaerica|type=transcript|length=6878bp
aaaaaatgtcaaaattgaaATCGCAGTAATTTTCAATATCTGGCTTACGG
TTAAACGTTGTACTGGTGTGTAGTATCCTCACTTGTGTCACGGAAACGCA
AGTTGGGATATAGTGCTTTAAGTGATTTCATTCTCGGTGGGAGTGGAGGT
CTAGAATATTTTGGAGAATCATCCACTTGGCTACCCGATTCTAAATCTTT
AACTGGGGCTGGGGCGGAAGGTAGTGGGCCACTTCTAGTACAAACCTCAG
CGTAAATATTTTCGGGCTGTTTTGCTGGAAAAAATCTTCTGAGAACGTTA
GTCGCTAAAGGATAGTTCGTTTGTTTCGTGTAGTACAAATATAAGGTAAA
CAAAAATAGCAAGATTAGCACAATGACCTGGACCAAGCCTAATGGTCCAC
CGAAAATTCCTGAGATCATGTTTCCGGCGCCTGTTCCGGCGTCCTTAAGT
AATTCACCTGTGGCCGGTAAAATTACTTTACTAGCATCTGCTATTGAACC
TACTACAGCTTTGTCCAAATCGCCAGCCCCTTGAAGTCCGTCCTTAAGAG
CTGAACCTATAGAGCGAATAATTTTCGAGGAACCATCGCCTATCTTCTCA
ATAGTGTAACCTAATGCCATACCGAAATTCGAAATGAAATCAGAGTCTGA
GTCTGTCGTTGCGACTTCATGCATATCATTAAGCGATTGACTAGTAAGGG
TTAGTAGCTGAAGAATGCTATATTGATCTAATCTTGGGGGTTTCCGAGCA
AAAGCTTTTGAATCAAAACCAATGACTAGGTCGAGTATTTGGAATTCCTT
TCTATtcactaaatttgataaaaccGCTGGAGTGACTGTTCCTTTGGTGC
CCACAACAAATGCTCTTTGATTTACGTCGACGACGTAAGTTGTTTCAGGT
CTATCATCGCAGTTAATTTTTTGGCTCGTGTGAAGTAAGGAGCGGGACGG
GACGtccaaaaataacaattttgtgGAGTATGGAATTCTCACGGGGAAGT
GAGAGTAGCATGTTCCATTCCACTGTCTATCCCAATAGATTGAATATGAC
gtaacagggaaacaatttcctATAGAGAGTCCGTCACCTACTAGATCAAA
GTGCTGACCAATTGTTCCTAAGAAATTATTGGAGGAGCCTGGAAAAGTGG
ACAGAACCCAACGCTCTAACTTCTGTATCCTCATTTCGTCCTGACAAATA
GCATTCCACGCATGTATTAAGTTTAGACGCTGTTGTTGATCTACTGCAGC
TAATTGTGCTTCTAAAAGGGAAGCGGCAAACCACTCGGGTTTCCGCATAC
TTAAGCGTCGCGCCGACGCTTTTATAAGTTCGAAATGCCCTTTTAGAAAA
TGTTTGGCTTTAAACAAGTAACCATTATCGAGAACAAAAGCCCTACCCAT
ACCTGGGAATTTCTTTTCCAGTTGAATTGAACCACCTATTTTGAGTGAGC
GTATTAAGATTAGAGATCCTGTTCTTTCTGCTATATGTTTTCCTAAGgag
tgaaaaacttttgtgTCGAGATTTTTTGGCAAAGTCCAAACTATAATGCT
ACCATGCGCTTCCTGAGGCCTACAATATGTCTTATTATAGGGGCAAGACG
TAGTCGTAAGAGATTGGTGAAGATTAACGTCTCCACCAACAACGAAGGCT
TTGTAAATGTTTATTGAGTAGTGGAAAAATTTTCGTGTCTTTGTGCGCAT
CCACGTACAGTCATAGCGTTCTGTAACGTCTAGTTCCCATTTACTTTCGT
CGCTTGTCTGTTTTAGTACAAAATCGTTCTTTAATGTCTTAGCTCTCCAA
ACCCTTCTGCATTCTTTAGGCGTtgtagaaactttaattctcctAATTTT
TTTATGCCTTTCCCCAAAGAAATTTTCTTCACATGATAGTGTTGCTTGAG
ATTTTTCGCAGTGGTAGAGTTTAATTGGCGTATATTTTGGTGAGTCAAGG
AAGACTTCGCCTTCGTATTTTTGAATACCCAATTTTTCGTCTGAGTTTGG
AACTGTGCAATTTCTCAGCGTAGGAAATCTATAAATACCTGCTGGCTTGA
CCTTCGTGCAGTCAAAGATAGGTCCTAGGTTTAACGATGTGCAGTTACTA
AACAAAGACACAAAAACAAGGAGTGCTAAGAGTGAGCGACTGGCGAGGCC
TGGCTTGCTACTATTAATGGTCAGTTTCGGCTTGTTCGTGGCTGTAAGCG
TGTTTACTTTAGGCTGATGACGTAATCTCTTTCGAAGGGTATCTAAAGGA
ATTTCATCTTCGCTATCATCATTTTGGTTCGCATTTTGTCTGATTGGCGC
ATCGTCAGGGTCATCAAATGGTTTCATGCGGTTAACATGGGTTGGCGCTT
TGAGGACTTTACCTGACATGTCTGAGATAAAGAACAACACATCGGAcagt
ttttgtttcaaaataaaaggtcCAATATATTTCTCTTGCAATTTTGGACT
CAGTCCTTTTTTTCTTGCTTCCTTCTTAAGTAAGATCTTGTCACCAACCG
AAAATTTCGAGACGCTAGCCTTTTTGTCGTAATTCTTTTTCATGGACTTT
TGCGACTTTTCCATTTGCTCTTTTGCTTCATCTTGCGCTATTTGCAGTGT
CTCAACGATATTTTCGCGAAAAGATGATAGGGGTTCCGCAAGTTTAGTAG
GGGGTAACAACGCTATATCCCCGGGCAACCTAGCTTCTCGTCCGTGAGTT
AGAAAGAAGGGGGTTTTCTTTGTGGCATTAGAAGCCGTAGTCCTTATAGC
TAATAAAACTCCGGGAATATAGGTATCCCAATCCTTTTGCGAATCCCCGC
AGTAAATTGCTAATCTCTTTACAAGGGTACCGTTGAGTCTTTCGCACATC
CCATTGGTTTGGGGATGGTAAGAGCTTGTATTTATTTTCTGCGTGTTTGT
GATGCGGCAAACCTCTCGCAAAAGCTTCGATAAAAAGTTAGTACCCCGGT
CGGACAGCAGTTCCGACGGAGCTCCGTGGCGGCAGACTATTTCGTTAAAA
AAAATGCGAGCAATAACAGGCGCTTCGGCTGTTGGAATTGGAAAAGCTTC
TGGCCATCTAGTGAAATGATCAGTTGCGACTAAAATGTACTTATTTCCGT
TATCAGAAACTGGAAATGGGCCGGTAATATCTACGGCTAAACGATCAAAT
GGGGCCGGAATAGGTAATGGTTTTAATGGTGCTCTTTTTGTACCTACACC
GAGCTTATAGGAGGCGCATTCTGGGCAAGACTTAACCCATCTTTGGCAAT
CGGCGTACATGTTTTTCCAAAAGTAGCGGCTTCGAATTTTCTTGTAAGTC
TTATCGGCATCAAAATGACCACCTGTCACGGAATCGTGGTgatcaattaa
aactttctgttgtaATCGCTTTGGAACTACTAGTTCTATATTTGCTTCGG
CTTTTCGACCGCTTGAAGGTATTGTTACGTGATGAAGAATACCGTAATCA
TTGACTAAGTAAGAAGGAGCTATTGATAAAGTCTCTTTTTGGCGTCGATC
TTTTGAGTGAAGGCGTTCATTCAAgatgtaaaaaatcaaaaacttgagGG
CAGGATCCTCATATTGCATTTCCTTAATGGTTTCTGGTAAATATCCCGAG
GATAAGGCGCACACAAAGTTAGGATGTCTAGACATTACATCTGCGTTATC
ATGGACTCGGCCTGGCCTGTGCTTAATGTCAAAGTCGTGCTGCTGCAAGG
TCAAAATCCAGCGTGCTAAACGGGCTCGTGGTTCTTTAAGGCTTAGTAGC
CAACGCAAGGAGCTATGGTCCGTGTGGACCGTAAATGACCGTCCGTGCAA
ATACGGAAGGTATTTCTTAACACCGGCGACTACTGCTAACGCTTCTTGCT
CTGTCGTGGAATAGTTTCGTTCGGCTTTATTTAGAGCGCGTCCACCATAA
GAGATGACCCtttctttattattttggaACTGGCCCAAAATCATTCCTAA
AGCAAAGTTGCTGGCGTCCACGTAAAGTTCGAATTTCGAGTTGAAATCAG
GAAGTGCCAGAATGGGAGGTTCTATTAACTTTTTACGCAAGGTTTCAAAA
GATTCTTGACAATTTTCGTCCCAATTAAAAATACAATCTTTTCGCAATAG
ATTTGTTAGTGGGGCCGCCAGGCGGGCGTACCCCTCGACAAAACGGCGAT
AATACCCTGTAAGGCCGAGAAATTGTTTAATTTGCTTTTGGTTTTTGGGG
ACCGGATAATCGACGAGAAGTTTAGTCTTGTCTGGGTCTGGCCTTACACC
GTCTTTAGAAACGATGTGGCCTAGAAAATTCAGTTCGTCTCTGACAAAGT
GGCACTTCGTTGGTTTCAACTTGATATTCGCGGCAAGTAATCTATCAAAA
ACTTCGGCTAAATCCTTCAAGTGGTCTTCAAAAGAGCGACTGTACACAAC
AATATCATCAATATAAATCAGGCATTTAACGTAAGTGAGGCCACGCAAAA
CACATTCTATTAGTCTCTAGAAACTACCTACGGCATTTGACAGTCCGAAA
GGAAGAACGTTAAATTGATACAAACCCTCATACGTGATAAAGGCGGTTAA
ATGCTTTGAATCTGGGTCCATACCTATTTGCCAGTACCCAGCTCTCATGT
CCAATGAGGTCATGAAAGTGGCACCGTAAAGCGCATCAAGCGTATCTTGG
ATGCGAGGAATAGGATGAGAATCCTTATGCGTAATGGCGTTAAGCTTACG
AAAATCAACACAAAACCTGTCGCCACCGTCCTTTTTCTTTGCTAAAACCA
CTGGAGACGCATAGCTACTACTAGAGGGCTCAATGATATCATGCTTGAGC
ATGTGCTCCACAATTTCTCTGATTTTCGTTCTGTTCTCATTAGTTGCGCG
GTAAGGCTTCGAACGGACCGGTGTCTTATCCTTAAGATCGATGCGATGTT
GTACGGCATCTGTTCGTCCTAACTCATCATCAGAAACCGCAAAGACACCT
CGGTAAACGTAAAGTAAATCACGAAGCTTTTTCTCCTGTTTTGGGGCCAA
GGAGGTCCCGTCAAAACTGAAATCGATTGGTGTCAATTGAGATCTGTTTT
TCGGAGGATGAGTTAAAATAGAGACAACTGGTTTTGTGACAGTATCGAGG
TCAACGTAGGAATCTATTATTGATGCTTGCACCAGTGGCGAGTGGGCCGG
AATACAAAGTGGCCTGTCAGAAGGATTATGTAAAACAACTTCTAAAACGT
TTACGTTCAGTTCGTGGGTGATCGGAGTAACTAAGGTCAGTTCATAAGTC
TCTGACTCTATTGCTTCTAAAAAGTACTCATGGCCATTTGAGGCCTTTGT
AGGATTCAAAAGTTGGCAAACAGCCATAGACTTTGGTGGAATTGTTAGTT
TTTTACCTATGGTCAAGATAGGTTCGTTAGAATCGTCCTCTACGTTTTCA
TTCTCTGGAGGAAGGCTACATGTATTGACCATAGGGAGGCAAAGCTTTTC
GTTTAAAACCAATTTCCCTTCGACTAAATAAATTACCGCCTTGTTGGCAG
TCAAAAAGTCTTGGCCGAGTATAACGTCAAAGCTACTCGGAAGGATCAAA
AATTTTTGCGTTAGCACCACATTATCGAACTGTAGTGGGAGTGTCAACTC
TCCTTCTACTTCTGCGCTGGATTCCCCTGAAAATGTCTGGACAGAATTAA
AGGAAGGCTTTTGTTTTGGGTAATTCTTGGGGCATACCTTGGCAAGAAAA
CTTTTGTCGATACAGGACACTGTCGCGCCAGTGTCAATAAGAAGTTTACA
GTCCTGGTTGAATATTTGTCCTTCTATGTAGACCAAAGGGCTAGGTCTCA
CAGGGTTAACTTCAGGCTTCAAAAATGGGGTTCCTTTTGGCTTTGGGGCT
TTAGTTTCCTTTTTCTTGGGGCCCACGACGTTGACTCCCGGCTTGGCGTA
AGTCGGTTTGCCGAACCGAACGGACTGATTACCCTTTTGGTATCTATAGT
ATTCTGGTTGATTAACTGGAAAACTGCTGGGGCTCCTGGGGTCCTGGTTT
CGTGGTGGAAAAGATTCCTTCCTTGAGTTTCTAGGTTGGGTACCGTAAGC
ATTCCCTTGAAAAGTAGCCCTTGGGGGATGACGGTAAGAATTAGAATGAT
CAGGTCTTCTTTGAGGGGGTCTAGGGGCCCTGGAGTCACGTCCGCGACCA
AAACTAGTTCTTTTAGCATAGCAGTCCCTAGCAATGTGACCGTGCCGCCC
ACATGAATAACACTTTATCGAAGATTTTCGAGGTTCCCTTGAATGTTCAA
GCTGGTTAACCCGTGCCCTTAACTGATTAAGTTCGTTCAATTTGTTGTTT
GAACAACCCTCTTCACCTTCCATTAGAGTCTGAATTCTTGGAATTAAGGA
GTTCAACTCGGCCTCCTTAGATCCTTTTAATGTTTGTAAAACAGCGTATT
TATTTTCGGCTAAAGCACGTGCCTCCGCGTACGTATCTGGATAGTGTAGC
ATGACGTATTCTTTTAGGTCGGGTTGAAGACCctgaacaaaaatattttt
ggcttCCTTATCCGACAACTCAAGCTTGCGGGCCTCGTTTTGGATGGAAA
GGGAGTATGTTTCCAGGGACTCCGTCTTTGTCATTTTCCTGCCGTGTAAT
TGGGCTATTTTTAGCATTTCCAGTTTTTTTggataatatttttctttgaa
aatatcttttatctttttaaaagtATCGATTTCTCCGGGTTGAAGAGTTC
CGAAGAAAAATAGAGCGTTTTCCTCGAGGCAAGAAGGAAACACTAGAAGT
TTATCGTCATCAGTAAGACTATAGTATTTTGCGTACTgatcaaaataatt
gaaaaaatctgTGACAAAGGGTTCCTCGGTGCCCTTAAACTTCGGTTGTC
GCATGGCCGTTTTGGTCTTTTGACCCGC Run BLAST on NCBI protein sequence of TCONS_00036391-protein >TCONS_00036391-protein ID=TCONS_00036391-protein|Name=TCONS_00036391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1297bp
MILGQFQNNKERVISYGGRALNKAERNYSTTEQEALAVVAGVKKYLPYLH
GRSFTVHTDHSSLRWLLSLKEPRARLARWILTLQQHDFDIKHRPGRVHDN
ADVMSRHPNFVCALSSGYLPETIKEMQYEDPALKFLIFYILNERLHSKDR
RQKETLSIAPSYLVNDYGILHHVTIPSSGRKAEANIELVVPKRLQQKVLI
DHHDSVTGGHFDADKTYKKIRSRYFWKNMYADCQRWVKSCPECASYKLGV
GTKRAPLKPLPIPAPFDRLAVDITGPFPVSDNGNKYILVATDHFTRWPEA
FPIPTAEAPVIARIFFNEIVCRHGAPSELLSDRGTNFLSKLLREVCRITN
TQKINTSSYHPQTNGMCERLNGTLVKRLAIYCGDSQKDWDTYIPGVLLAI
RTTASNATKKTPFFLTHGREARLPGDIALLPPTKLAEPLSSFRENIVETL
QIAQDEAKEQMEKSQKSMKKNYDKKASVSKFSVGDKILLKKEARKKGLSP
KLQEKYIGPFILKQKLSDVLFFISDMSGKVLKAPTHVNRMKPFDDPDDAP
IRQNANQNDDSEDEIPLDTLRKRLRHQPKVNTLTATNKPKLTINSSKPGL
ASRSLLALLVFVSLFSNCTSLNLGPIFDCTKVKPAGIYRFPTLRNCTVPN
SDEKLGIQKYEGEVFLDSPKYTPIKLYHCEKSQATLSCEENFFGERHKKI
RRIKVSTTPKECRRVWRAKTLKNDFVLKQTSDESKWELDVTERYDCTWMR
TKTRKFFHYSINIYKAFVVGGDVNLHQSLTTTSCPYNKTYCRPQEAHGSI
IVWTLPKNLDTKVFHSLGKHIAERTGSLILIRSLKIGGSIQLEKKFPGMG
RAFVLDNGYLFKAKHFLKGHFELIKASARRLSMRKPEWFAASLLEAQLAA
VDQQQRLNLIHAWNAICQDEMRIQKLERWVLSTFPGSSNNFLGTIGQHFD
LVGDGLSIGNCFPVTSYSIYWDRQWNGTCYSHFPVRIPYSTKLLFLDVPS
RSLLHTSQKINCDDRPETTYVVDVNQRAFVVGTKGTVTPAVLSNLVNRKE
FQILDLVIGFDSKAFARKPPRLDQYSILQLLTLTSQSLNDMHEVATTDSD
SDFISNFGMALGYTIEKIGDGSSKIIRSIGSALKDGLQGAGDLDKAVVGS
IADASKVILPATGELLKDAGTGAGNMISGIFGGPLGLVQVIVLILLFLFT
LYLYYTKQTNYPLATNVLRRFFPAKQPENIYAEVCTRSGPLPSAPAPVKD
LESGSQVDDSPKYSRPPLPPRMKSLKALYPNLRFRDTSEDTTHQYNV Run BLAST on NCBI transcript from alignment at sc0001453:11322..18199 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036391 ID=TCONS_00036391|Name=TCONS_00036391|organism=Clytia hemisphaerica|type=transcript|length=6878bp|location=Sequence derived from alignment at sc0001453:11322..18199 (Clytia hemisphaerica)
GCGGGTCAAAAGACCAAAACGGCCATGCGACAACCGAAGTTTAAGGGCAC
CGAGGAACCCTTTGTCAcagattttttcaattattttgatcAGTACGCAA
AATACTATAGTCTTACTGATGACGATAAACTTCTAGTGTTTCCTTCTTGC
CTCGAGGAAAACGCTCTATTTTTCTTCGGAACTCTTCAACCCGGAGAAAT
CGATacttttaaaaagataaaagatattttcaaagaaaaatattatccAA
AAAAACTGGAAATGCTAAAAATAGCCCAATTACACGGCAGGAAAATGACA
AAGACGGAGTCCCTGGAAACATACTCCCTTTCCATCCAAAACGAGGCCCG
CAAGCTTGAGTTGTCGGATAAGGaagccaaaaatatttttgttcagGGTC
TTCAACCCGACCTAAAAGAATACGTCATGCTACACTATCCAGATACGTAC
GCGGAGGCACGTGCTTTAGCCGAAAATAAATACGCTGTTTTACAAACATT
AAAAGGATCTAAGGAGGCCGAGTTGAACTCCTTAATTCCAAGAATTCAGA
CTCTAATGGAAGGTGAAGAGGGTTGTTCAAACAACAAATTGAACGAACTT
AATCAGTTAAGGGCACGGGTTAACCAGCTTGAACATTCAAGGGAACCTCG
AAAATCTTCGATAAAGTGTTATTCATGTGGGCGGCACGGTCACATTGCTA
GGGACTGCTATGCTAAAAGAACTAGTTTTGGTCGCGGACGTGACTCCAGG
GCCCCTAGACCCCCTCAAAGAAGACCTGATCATTCTAATTCTTACCGTCA
TCCCCCAAGGGCTACTTTTCAAGGGAATGCTTACGGTACCCAACCTAGAA
ACTCAAGGAAGGAATCTTTTCCACCACGAAACCAGGACCCCAGGAGCCCC
AGCAGTTTTCCAGTTAATCAACCAGAATACTATAGATACCAAAAGGGTAA
TCAGTCCGTTCGGTTCGGCAAACCGACTTACGCCAAGCCGGGAGTCAACG
TCGTGGGCCCCAAGAAAAAGGAAACTAAAGCCCCAAAGCCAAAAGGAACC
CCATTTTTGAAGCCTGAAGTTAACCCTGTGAGACCTAGCCCTTTGGTCTA
CATAGAAGGACAAATATTCAACCAGGACTGTAAACTTCTTATTGACACTG
GCGCGACAGTGTCCTGTATCGACAAAAGTTTTCTTGCCAAGGTATGCCCC
AAGAATTACCCAAAACAAAAGCCTTCCTTTAATTCTGTCCAGACATTTTC
AGGGGAATCCAGCGCAGAAGTAGAAGGAGAGTTGACACTCCCACTACAGT
TCGATAATGTGGTGCTAACGCAAAAATTTTTGATCCTTCCGAGTAGCTTT
GACGTTATACTCGGCCAAGACTTTTTGACTGCCAACAAGGCGGTAATTTA
TTTAGTCGAAGGGAAATTGGTTTTAAACGAAAAGCTTTGCCTCCCTATGG
TCAATACATGTAGCCTTCCTCCAGAGAATGAAAACGTAGAGGACGATTCT
AACGAACCTATCTTGACCATAGGTAAAAAACTAACAATTCCACCAAAGTC
TATGGCTGTTTGCCAACTTTTGAATCCTACAAAGGCCTCAAATGGCCATG
AGTACTTTTTAGAAGCAATAGAGTCAGAGACTTATGAACTGACCTTAGTT
ACTCCGATCACCCACGAACTGAACGTAAACGTTTTAGAAGTTGTTTTACA
TAATCCTTCTGACAGGCCACTTTGTATTCCGGCCCACTCGCCACTGGTGC
AAGCATCAATAATAGATTCCTACGTTGACCTCGATACTGTCACAAAACCA
GTTGTCTCTATTTTAACTCATCCTCCGAAAAACAGATCTCAATTGACACC
AATCGATTTCAGTTTTGACGGGACCTCCTTGGCCCCAAAACAGGAGAAAA
AGCTTCGTGATTTACTTTACGTTTACCGAGGTGTCTTTGCGGTTTCTGAT
GATGAGTTAGGACGAACAGATGCCGTACAACATCGCATCGATCTTAAGGA
TAAGACACCGGTCCGTTCGAAGCCTTACCGCGCAACTAATGAGAACAGAA
CGAAAATCAGAGAAATTGTGGAGCACATGCTCAAGCATGATATCATTGAG
CCCTCTAGTAGTAGCTATGCGTCTCCAGTGGTTTTAGCAAAGAAAAAGGA
CGGTGGCGACAGGTTTTGTGTTGATTTTCGTAAGCTTAACGCCATTACGC
ATAAGGATTCTCATCCTATTCCTCGCATCCAAGATACGCTTGATGCGCTT
TACGGTGCCACTTTCATGACCTCATTGGACATGAGAGCTGGGTACTGGCA
AATAGGTATGGACCCAGATTCAAAGCATTTAACCGCCTTTATCACGTATG
AGGGTTTGTATCAATTTAACGTTCTTCCTTTCGGACTGTCAAATGCCGTA
GGTAGTTTCTAGAGACTAATAGAATGTGTTTTGCGTGGCCTCACTTACGT
TAAATGCCTGATTTATATTGATGATATTGTTGTGTACAGTCGCTCTTTTG
AAGACCACTTGAAGGATTTAGCCGAAGTTTTTGATAGATTACTTGCCGCG
AATATCAAGTTGAAACCAACGAAGTGCCACTTTGTCAGAGACGAACTGAA
TTTTCTAGGCCACATCGTTTCTAAAGACGGTGTAAGGCCAGACCCAGACA
AGACTAAACTTCTCGTCGATTATCCGGTCCCCAAAAACCAAAAGCAAATT
AAACAATTTCTCGGCCTTACAGGGTATTATCGCCGTTTTGTCGAGGGGTA
CGCCCGCCTGGCGGCCCCACTAACAAATCTATTGCGAAAAGATTGTATTT
TTAATTGGGACGAAAATTGTCAAGAATCTTTTGAAACCTTGCGTAAAAAG
TTAATAGAACCTCCCATTCTGGCACTTCCTGATTTCAACTCGAAATTCGA
ACTTTACGTGGACGCCAGCAACTTTGCTTTAGGAATGATTTTGGGCCAGT
tccaaaataataaagaaaGGGTCATCTCTTATGGTGGACGCGCTCTAAAT
AAAGCCGAACGAAACTATTCCACGACAGAGCAAGAAGCGTTAGCAGTAGT
CGCCGGTGTTAAGAAATACCTTCCGTATTTGCACGGACGGTCATTTACGG
TCCACACGGACCATAGCTCCTTGCGTTGGCTACTAAGCCTTAAAGAACCA
CGAGCCCGTTTAGCACGCTGGATTTTGACCTTGCAGCAGCACGACTTTGA
CATTAAGCACAGGCCAGGCCGAGTCCATGATAACGCAGATGTAATGTCTA
GACATCCTAACTTTGTGTGCGCCTTATCCTCGGGATATTTACCAGAAACC
ATTAAGGAAATGCAATATGAGGATCCTGCCctcaagtttttgatttttta
catcTTGAATGAACGCCTTCACTCAAAAGATCGACGCCAAAAAGAGACTT
TATCAATAGCTCCTTCTTACTTAGTCAATGATTACGGTATTCTTCATCAC
GTAACAATACCTTCAAGCGGTCGAAAAGCCGAAGCAAATATAGAACTAGT
AGTTCCAAAGCGATtacaacagaaagttttaattgatcACCACGATTCCG
TGACAGGTGGTCATTTTGATGCCGATAAGACTTACAAGAAAATTCGAAGC
CGCTACTTTTGGAAAAACATGTACGCCGATTGCCAAAGATGGGTTAAGTC
TTGCCCAGAATGCGCCTCCTATAAGCTCGGTGTAGGTACAAAAAGAGCAC
CATTAAAACCATTACCTATTCCGGCCCCATTTGATCGTTTAGCCGTAGAT
ATTACCGGCCCATTTCCAGTTTCTGATAACGGAAATAAGTACATTTTAGT
CGCAACTGATCATTTCACTAGATGGCCAGAAGCTTTTCCAATTCCAACAG
CCGAAGCGCCTGTTATTGCTCGCATTTTTTTTAACGAAATAGTCTGCCGC
CACGGAGCTCCGTCGGAACTGCTGTCCGACCGGGGTACTAACTTTTTATC
GAAGCTTTTGCGAGAGGTTTGCCGCATCACAAACACGCAGAAAATAAATA
CAAGCTCTTACCATCCCCAAACCAATGGGATGTGCGAAAGACTCAACGGT
ACCCTTGTAAAGAGATTAGCAATTTACTGCGGGGATTCGCAAAAGGATTG
GGATACCTATATTCCCGGAGTTTTATTAGCTATAAGGACTACGGCTTCTA
ATGCCACAAAGAAAACCCCCTTCTTTCTAACTCACGGACGAGAAGCTAGG
TTGCCCGGGGATATAGCGTTGTTACCCCCTACTAAACTTGCGGAACCCCT
ATCATCTTTTCGCGAAAATATCGTTGAGACACTGCAAATAGCGCAAGATG
AAGCAAAAGAGCAAATGGAAAAGTCGCAAAAGTCCATGAAAAAGAATTAC
GACAAAAAGGCTAGCGTCTCGAAATTTTCGGTTGGTGACAAGATCTTACT
TAAGAAGGAAGCAAGAAAAAAAGGACTGAGTCCAAAATTGCAAGAGAAAT
ATATTGgaccttttattttgaaacaaaaactgTCCGATGTGTTGTTCTTT
ATCTCAGACATGTCAGGTAAAGTCCTCAAAGCGCCAACCCATGTTAACCG
CATGAAACCATTTGATGACCCTGACGATGCGCCAATCAGACAAAATGCGA
ACCAAAATGATGATAGCGAAGATGAAATTCCTTTAGATACCCTTCGAAAG
AGATTACGTCATCAGCCTAAAGTAAACACGCTTACAGCCACGAACAAGCC
GAAACTGACCATTAATAGTAGCAAGCCAGGCCTCGCCAGTCGCTCACTCT
TAGCACTCCTTGTTTTTGTGTCTTTGTTTAGTAACTGCACATCGTTAAAC
CTAGGACCTATCTTTGACTGCACGAAGGTCAAGCCAGCAGGTATTTATAG
ATTTCCTACGCTGAGAAATTGCACAGTTCCAAACTCAGACGAAAAATTGG
GTATTCAAAAATACGAAGGCGAAGTCTTCCTTGACTCACCAAAATATACG
CCAATTAAACTCTACCACTGCGAAAAATCTCAAGCAACACTATCATGTGA
AGAAAATTTCTTTGGGGAAAGGCATAAAAAAATTaggagaattaaagttt
ctacaACGCCTAAAGAATGCAGAAGGGTTTGGAGAGCTAAGACATTAAAG
AACGATTTTGTACTAAAACAGACAAGCGACGAAAGTAAATGGGAACTAGA
CGTTACAGAACGCTATGACTGTACGTGGATGCGCACAAAGACACGAAAAT
TTTTCCACTACTCAATAAACATTTACAAAGCCTTCGTTGTTGGTGGAGAC
GTTAATCTTCACCAATCTCTTACGACTACGTCTTGCCCCTATAATAAGAC
ATATTGTAGGCCTCAGGAAGCGCATGGTAGCATTATAGTTTGGACTTTGC
CAAAAAATCTCGAcacaaaagtttttcactcCTTAGGAAAACATATAGCA
GAAAGAACAGGATCTCTAATCTTAATACGCTCACTCAAAATAGGTGGTTC
AATTCAACTGGAAAAGAAATTCCCAGGTATGGGTAGGGCTTTTGTTCTCG
ATAATGGTTACTTGTTTAAAGCCAAACATTTTCTAAAAGGGCATTTCGAA
CTTATAAAAGCGTCGGCGCGACGCTTAAGTATGCGGAAACCCGAGTGGTT
TGCCGCTTCCCTTTTAGAAGCACAATTAGCTGCAGTAGATCAACAACAGC
GTCTAAACTTAATACATGCGTGGAATGCTATTTGTCAGGACGAAATGAGG
ATACAGAAGTTAGAGCGTTGGGTTCTGTCCACTTTTCCAGGCTCCTCCAA
TAATTTCTTAGGAACAATTGGTCAGCACTTTGATCTAGTAGGTGACGGAC
TCTCTATaggaaattgtttccctgttacGTCATATTCAATCTATTGGGAT
AGACAGTGGAATGGAACATGCTACTCTCACTTCCCCGTGAGAATTCCATA
CTCcacaaaattgttatttttggaCGTCCCGTCCCGCTCCTTACTTCACA
CGAGCCAAAAAATTAACTGCGATGATAGACCTGAAACAACTTACGTCGTC
GACGTAAATCAAAGAGCATTTGTTGTGGGCACCAAAGGAACAGTCACTCC
AGCggttttatcaaatttagtgaATAGAAAGGAATTCCAAATACTCGACC
TAGTCATTGGTTTTGATTCAAAAGCTTTTGCTCGGAAACCCCCAAGATTA
GATCAATATAGCATTCTTCAGCTACTAACCCTTACTAGTCAATCGCTTAA
TGATATGCATGAAGTCGCAACGACAGACTCAGACTCTGATTTCATTTCGA
ATTTCGGTATGGCATTAGGTTACACTATTGAGAAGATAGGCGATGGTTCC
TCGAAAATTATTCGCTCTATAGGTTCAGCTCTTAAGGACGGACTTCAAGG
GGCTGGCGATTTGGACAAAGCTGTAGTAGGTTCAATAGCAGATGCTAGTA
AAGTAATTTTACCGGCCACAGGTGAATTACTTAAGGACGCCGGAACAGGC
GCCGGAAACATGATCTCAGGAATTTTCGGTGGACCATTAGGCTTGGTCCA
GGTCATTGTGCTAATCTTGCTATTTTTGTTTACCTTATATTTGTACTACA
CGAAACAAACGAACTATCCTTTAGCGACTAACGTTCTCAGAAGATTTTTT
CCAGCAAAACAGCCCGAAAATATTTACGCTGAGGTTTGTACTAGAAGTGG
CCCACTACCTTCCGCCCCAGCCCCAGTTAAAGATTTAGAATCGGGTAGCC
AAGTGGATGATTCTCCAAAATATTCTAGACCTCCACTCCCACCGAGAATG
AAATCACTTAAAGCACTATATCCCAACTTGCGTTTCCGTGACACAAGTGA
GGATACTACACACCAGTACAACGTTTAACCGTAAGCCAGATATTGAAAAT
TACTGCGATttcaattttgacatttttt Coding sequence (CDS) from alignment at sc0001453:11322..18199 >TCONS_00036391 ID=TCONS_00036391|Name=TCONS_00036391|organism=Clytia hemisphaerica|type=CDS|length=3894bp|location=Sequence derived from alignment at sc0001453:11322..18199 (Clytia hemisphaerica)
ATGATTTTGGGCCAGTtccaaaataataaagaaaGGGTCATCTCTTATGG
TGGACGCGCTCTAAATAAAGCCGAACGAAACTATTCCACGACAGAGCAAG
AAGCGTTAGCAGTAGTCGCCGGTGTTAAGAAATACCTTCCGTATTTGCAC
GGACGGTCATTTACGGTCCACACGGACCATAGCTCCTTGCGTTGGCTACT
AAGCCTTAAAGAACCACGAGCCCGTTTAGCACGCTGGATTTTGACCTTGC
AGCAGCACGACTTTGACATTAAGCACAGGCCAGGCCGAGTCCATGATAAC
GCAGATGTAATGTCTAGACATCCTAACTTTGTGTGCGCCTTATCCTCGGG
ATATTTACCAGAAACCATTAAGGAAATGCAATATGAGGATCCTGCCctca
agtttttgattttttacatcTTGAATGAACGCCTTCACTCAAAAGATCGA
CGCCAAAAAGAGACTTTATCAATAGCTCCTTCTTACTTAGTCAATGATTA
CGGTATTCTTCATCACGTAACAATACCTTCAAGCGGTCGAAAAGCCGAAG
CAAATATAGAACTAGTAGTTCCAAAGCGATtacaacagaaagttttaatt
gatcACCACGATTCCGTGACAGGTGGTCATTTTGATGCCGATAAGACTTA
CAAGAAAATTCGAAGCCGCTACTTTTGGAAAAACATGTACGCCGATTGCC
AAAGATGGGTTAAGTCTTGCCCAGAATGCGCCTCCTATAAGCTCGGTGTA
GGTACAAAAAGAGCACCATTAAAACCATTACCTATTCCGGCCCCATTTGA
TCGTTTAGCCGTAGATATTACCGGCCCATTTCCAGTTTCTGATAACGGAA
ATAAGTACATTTTAGTCGCAACTGATCATTTCACTAGATGGCCAGAAGCT
TTTCCAATTCCAACAGCCGAAGCGCCTGTTATTGCTCGCATTTTTTTTAA
CGAAATAGTCTGCCGCCACGGAGCTCCGTCGGAACTGCTGTCCGACCGGG
GTACTAACTTTTTATCGAAGCTTTTGCGAGAGGTTTGCCGCATCACAAAC
ACGCAGAAAATAAATACAAGCTCTTACCATCCCCAAACCAATGGGATGTG
CGAAAGACTCAACGGTACCCTTGTAAAGAGATTAGCAATTTACTGCGGGG
ATTCGCAAAAGGATTGGGATACCTATATTCCCGGAGTTTTATTAGCTATA
AGGACTACGGCTTCTAATGCCACAAAGAAAACCCCCTTCTTTCTAACTCA
CGGACGAGAAGCTAGGTTGCCCGGGGATATAGCGTTGTTACCCCCTACTA
AACTTGCGGAACCCCTATCATCTTTTCGCGAAAATATCGTTGAGACACTG
CAAATAGCGCAAGATGAAGCAAAAGAGCAAATGGAAAAGTCGCAAAAGTC
CATGAAAAAGAATTACGACAAAAAGGCTAGCGTCTCGAAATTTTCGGTTG
GTGACAAGATCTTACTTAAGAAGGAAGCAAGAAAAAAAGGACTGAGTCCA
AAATTGCAAGAGAAATATATTGgaccttttattttgaaacaaaaactgTC
CGATGTGTTGTTCTTTATCTCAGACATGTCAGGTAAAGTCCTCAAAGCGC
CAACCCATGTTAACCGCATGAAACCATTTGATGACCCTGACGATGCGCCA
ATCAGACAAAATGCGAACCAAAATGATGATAGCGAAGATGAAATTCCTTT
AGATACCCTTCGAAAGAGATTACGTCATCAGCCTAAAGTAAACACGCTTA
CAGCCACGAACAAGCCGAAACTGACCATTAATAGTAGCAAGCCAGGCCTC
GCCAGTCGCTCACTCTTAGCACTCCTTGTTTTTGTGTCTTTGTTTAGTAA
CTGCACATCGTTAAACCTAGGACCTATCTTTGACTGCACGAAGGTCAAGC
CAGCAGGTATTTATAGATTTCCTACGCTGAGAAATTGCACAGTTCCAAAC
TCAGACGAAAAATTGGGTATTCAAAAATACGAAGGCGAAGTCTTCCTTGA
CTCACCAAAATATACGCCAATTAAACTCTACCACTGCGAAAAATCTCAAG
CAACACTATCATGTGAAGAAAATTTCTTTGGGGAAAGGCATAAAAAAATT
aggagaattaaagtttctacaACGCCTAAAGAATGCAGAAGGGTTTGGAG
AGCTAAGACATTAAAGAACGATTTTGTACTAAAACAGACAAGCGACGAAA
GTAAATGGGAACTAGACGTTACAGAACGCTATGACTGTACGTGGATGCGC
ACAAAGACACGAAAATTTTTCCACTACTCAATAAACATTTACAAAGCCTT
CGTTGTTGGTGGAGACGTTAATCTTCACCAATCTCTTACGACTACGTCTT
GCCCCTATAATAAGACATATTGTAGGCCTCAGGAAGCGCATGGTAGCATT
ATAGTTTGGACTTTGCCAAAAAATCTCGAcacaaaagtttttcactcCTT
AGGAAAACATATAGCAGAAAGAACAGGATCTCTAATCTTAATACGCTCAC
TCAAAATAGGTGGTTCAATTCAACTGGAAAAGAAATTCCCAGGTATGGGT
AGGGCTTTTGTTCTCGATAATGGTTACTTGTTTAAAGCCAAACATTTTCT
AAAAGGGCATTTCGAACTTATAAAAGCGTCGGCGCGACGCTTAAGTATGC
GGAAACCCGAGTGGTTTGCCGCTTCCCTTTTAGAAGCACAATTAGCTGCA
GTAGATCAACAACAGCGTCTAAACTTAATACATGCGTGGAATGCTATTTG
TCAGGACGAAATGAGGATACAGAAGTTAGAGCGTTGGGTTCTGTCCACTT
TTCCAGGCTCCTCCAATAATTTCTTAGGAACAATTGGTCAGCACTTTGAT
CTAGTAGGTGACGGACTCTCTATaggaaattgtttccctgttacGTCATA
TTCAATCTATTGGGATAGACAGTGGAATGGAACATGCTACTCTCACTTCC
CCGTGAGAATTCCATACTCcacaaaattgttatttttggaCGTCCCGTCC
CGCTCCTTACTTCACACGAGCCAAAAAATTAACTGCGATGATAGACCTGA
AACAACTTACGTCGTCGACGTAAATCAAAGAGCATTTGTTGTGGGCACCA
AAGGAACAGTCACTCCAGCggttttatcaaatttagtgaATAGAAAGGAA
TTCCAAATACTCGACCTAGTCATTGGTTTTGATTCAAAAGCTTTTGCTCG
GAAACCCCCAAGATTAGATCAATATAGCATTCTTCAGCTACTAACCCTTA
CTAGTCAATCGCTTAATGATATGCATGAAGTCGCAACGACAGACTCAGAC
TCTGATTTCATTTCGAATTTCGGTATGGCATTAGGTTACACTATTGAGAA
GATAGGCGATGGTTCCTCGAAAATTATTCGCTCTATAGGTTCAGCTCTTA
AGGACGGACTTCAAGGGGCTGGCGATTTGGACAAAGCTGTAGTAGGTTCA
ATAGCAGATGCTAGTAAAGTAATTTTACCGGCCACAGGTGAATTACTTAA
GGACGCCGGAACAGGCGCCGGAAACATGATCTCAGGAATTTTCGGTGGAC
CATTAGGCTTGGTCCAGGTCATTGTGCTAATCTTGCTATTTTTGTTTACC
TTATATTTGTACTACACGAAACAAACGAACTATCCTTTAGCGACTAACGT
TCTCAGAAGATTTTTTCCAGCAAAACAGCCCGAAAATATTTACGCTGAGG
TTTGTACTAGAAGTGGCCCACTACCTTCCGCCCCAGCCCCAGTTAAAGAT
TTAGAATCGGGTAGCCAAGTGGATGATTCTCCAAAATATTCTAGACCTCC
ACTCCCACCGAGAATGAAATCACTTAAAGCACTATATCCCAACTTGCGTT
TCCGTGACACAAGTGAGGATACTACACACCAGTACAACGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036391-exon-sc0001453-1491911889:11322..18199 | TCONS_00036391-exon-sc0001453-1491911889:11322..18199 | Clytia hemisphaerica | exon |
| TCONS_00036391-exon-sc0001453-1510915933:11322..18199 | TCONS_00036391-exon-sc0001453-1510915933:11322..18199 | Clytia hemisphaerica | exon |
| TCONS_00036391-exon-sc0001453-1575043694:11322..18199 | TCONS_00036391-exon-sc0001453-1575043694:11322..18199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001453 | supercontig | sc0001453:11322..18199 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00036391 vs. Swiss-Prot (Human)
Match: GIN1 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=1 SV=3) HSP 1 Score: 125.561 bits (314), Expect = 1.795e-29 Identity = 96/396 (24.24%), Postives = 184/396 (46.46%), Query Frame = -1
Query: 2274 GRKAEANIELVVPKRLQQKVLIDHHDSVTGGHFDADKTYKKIRSRYFWKNMYADCQRWVKSCPEC--ASYKLGVGTKRAPLKPLPIPAPFDRLAVDITGPFPVSDNGNKYILVATDHFTRWPEAFPIPTAEAPVIARIFFNEIVCRHGAPSELLSDRGTNFLSKLLREVCRITNTQKINTSSYHPQTNGMCERLNGTLVKRLAIYCGDSQKDWDTYIPGVLLAIRTTASNATKKTPFFLTHGREARLP----------GD-----IALLPPTKLAEPLSSFRENIVETLQIAQDEAKEQMEKSQKSMKKNYDKKASVSKFSVGDKILLKKEARKKGLSPKLQEKYIGPFILKQKLSDVLFFISDMSGKVLKAPTHVNRMKPFDDPDDAPIRQNANQ 3410
G+ + N ++V + ++KVL + H++ +G H +T + S Y+W ++ D ++WV +C C A + V K+ LK + P+ + VD+ GPF S+ + Y ++ TD FT+W P+ A +++ N I +G P +++ D+ F+ ++ E+ R+ ++I S+ T E T+ L+ +C D +WD ++ V A T TK TP+F R +P GD +L K A+ + EN +L ++ +++ KS+ +KK K+ + VG ++L +++ K + Q +++GP ++ + D +G LK P ++ +KP+ IR+++ Q
Sbjct: 54 GKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLK---VENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAIIN-IFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQI-VISHTSGTVNPTESTPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKEADKI---MENKTTSLGQMENNNLDELNKSKIIVKKK-PKQLNPFHLKVGHEVLRQRKNWWK--DGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSHLKPY-------IRESSEQ 431
The following BLAST results are available for this feature:
|
