TCONS_00036391-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036391-protein
Unique NameTCONS_00036391-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1297

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036391-protein ID=TCONS_00036391-protein|Name=TCONS_00036391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1297bp
MILGQFQNNKERVISYGGRALNKAERNYSTTEQEALAVVAGVKKYLPYLH
GRSFTVHTDHSSLRWLLSLKEPRARLARWILTLQQHDFDIKHRPGRVHDN
ADVMSRHPNFVCALSSGYLPETIKEMQYEDPALKFLIFYILNERLHSKDR
RQKETLSIAPSYLVNDYGILHHVTIPSSGRKAEANIELVVPKRLQQKVLI
DHHDSVTGGHFDADKTYKKIRSRYFWKNMYADCQRWVKSCPECASYKLGV
GTKRAPLKPLPIPAPFDRLAVDITGPFPVSDNGNKYILVATDHFTRWPEA
FPIPTAEAPVIARIFFNEIVCRHGAPSELLSDRGTNFLSKLLREVCRITN
TQKINTSSYHPQTNGMCERLNGTLVKRLAIYCGDSQKDWDTYIPGVLLAI
RTTASNATKKTPFFLTHGREARLPGDIALLPPTKLAEPLSSFRENIVETL
QIAQDEAKEQMEKSQKSMKKNYDKKASVSKFSVGDKILLKKEARKKGLSP
KLQEKYIGPFILKQKLSDVLFFISDMSGKVLKAPTHVNRMKPFDDPDDAP
IRQNANQNDDSEDEIPLDTLRKRLRHQPKVNTLTATNKPKLTINSSKPGL
ASRSLLALLVFVSLFSNCTSLNLGPIFDCTKVKPAGIYRFPTLRNCTVPN
SDEKLGIQKYEGEVFLDSPKYTPIKLYHCEKSQATLSCEENFFGERHKKI
RRIKVSTTPKECRRVWRAKTLKNDFVLKQTSDESKWELDVTERYDCTWMR
TKTRKFFHYSINIYKAFVVGGDVNLHQSLTTTSCPYNKTYCRPQEAHGSI
IVWTLPKNLDTKVFHSLGKHIAERTGSLILIRSLKIGGSIQLEKKFPGMG
RAFVLDNGYLFKAKHFLKGHFELIKASARRLSMRKPEWFAASLLEAQLAA
VDQQQRLNLIHAWNAICQDEMRIQKLERWVLSTFPGSSNNFLGTIGQHFD
LVGDGLSIGNCFPVTSYSIYWDRQWNGTCYSHFPVRIPYSTKLLFLDVPS
RSLLHTSQKINCDDRPETTYVVDVNQRAFVVGTKGTVTPAVLSNLVNRKE
FQILDLVIGFDSKAFARKPPRLDQYSILQLLTLTSQSLNDMHEVATTDSD
SDFISNFGMALGYTIEKIGDGSSKIIRSIGSALKDGLQGAGDLDKAVVGS
IADASKVILPATGELLKDAGTGAGNMISGIFGGPLGLVQVIVLILLFLFT
LYLYYTKQTNYPLATNVLRRFFPAKQPENIYAEVCTRSGPLPSAPAPVKD
LESGSQVDDSPKYSRPPLPPRMKSLKALYPNLRFRDTSEDTTHQYNV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021435XLOC_021435Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036391TCONS_00036391Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 443..467
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1243..1273
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 538..565
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 2..108
e-value: 1.23442E-42
score: 152.262
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..93
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 258..475
e-value: 2.3E-47
score: 160.7
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 263..414
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 264..376
e-value: 1.9E-18
score: 66.7
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 261..432
score: 20.796

Blast
[Close]
BLAST of TCONS_00036391-protein vs. Swiss-Prot (Human)
Match: GIN1 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 5.096e-30
Identity = 98/397 (24.69%), Postives = 184/397 (46.35%), Query Frame = 0 
Query:  179 GRKAEANIELVVPKRLQQKVLIDHHDSVTGGHFDADKTYKKIRSRYFWKNMYADCQRWVKSCPEC--ASYKLGVGTKRAPLKPLPIPAPFDRLAVDITGPFPVSDNGNKYILVATDHFTRWPEAFPIPTAEAPVIARIFFNEIVCRHGAPSELLSDRGTNFLSKLLREVCRITNTQKINTSSYHPQTNGMCERLNGTLVKRLAIYCGDSQKDWDTYIPGVLLAIRTTASNATKKTPFFLTHGREARLP----------GD-----IALLPPTKLAEPLSSFRENIVETLQIAQDEAKEQMEKSQKSMKKNYDKKASVSKFSVGDKIL-LKKEARKKGLSPKLQEKYIGPFILKQKLSDVLFFISDMSGKVLKAPTHVNRMKPFDDPDDAPIRQNANQ 557
            G+  + N  ++V +  ++KVL + H++ +G H    +T   + S Y+W ++  D ++WV +C  C  A   + V  K+  LK   +  P+  + VD+ GPF  S+  + Y ++ TD FT+W    P+    A  +++   N I   +G P +++ D+   F+ ++  E+ R+   ++I   S+   T    E    T+   L+ +C D   +WD ++  V  A   T    TK TP+F    R   +P          GD       +L   K A+ +    EN   +L   ++   +++ KS+  +KK   K+ +     VG ++L  +K   K G   + Q +++GP ++          + D +G  LK P  ++ +KP+       IR+++ Q
Sbjct:   54 GKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLK---VENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAIIN-IFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQI-VISHTSGTVNPTESTPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKEADKI---MENKTTSLGQMENNNLDELNKSKIIVKKK-PKQLNPFHLKVGHEVLRQRKNWWKDG---RFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSHLKPY-------IRESSEQ 431
The following BLAST results are available for this feature:
BLAST of TCONS_00036391-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GIN15.096e-3024.69Gypsy retrotransposon integrase-like protein 1 OS=... [more]
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