TCONS_00036389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036389
Unique NameTCONS_00036389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036389 ID=TCONS_00036389|Name=TCONS_00036389|organism=Clytia hemisphaerica|type=transcript|length=1866bp
ATATTGTAGACTGGGCTAACAAAGGGGGAGACGGCTCAGCGGAGAGATCA
GTAATTTAAGACTGTATATGGTTTCGTACCATCGATTAACTTATATTCTC
ATTTTCAACTTATAATAATTTGACAGCGTTTAGTTTAAATGAAACATCTT
ATAAAATAGGTTATACACTATTCGTGTCTCTTTCAATCTCCGTCTTTCAT
CGTTTGAGTTGCAGCTTTTATAGCTGTCAACGGAATGTCAATGGAATGTC
GTTAGATTTAAATAAAGTAACAGATATTGGTCTTGGGCCGCATGGATCTC
ATTCGTATGTTTGTTGCGGTTCGAGCATGTTTCAGCATTTGCGTAGTTTT
AATCATCGATCGTTATGTGATATTGGTCTTGGTAGAGCCATTTTCTGATG
GGGTGGCCAGCTTGTATTAAGCTCCAGCTGACATTCTCCACGGGTTGAAT
TTTTCTTGTCCCAAGAAAGTGTCAGGTTCTcctcaaggaagtgtcccatG
ACATTCTCCACGGGTTGAATTTTTCTTGTCCCAAGAAAGTGTCAGGTTCT
cctcaaggaagtgtcccatGACATTCTCCACGGCGTAATCGAACGTAGTA
GTCGTAAGAAAGCGTTGGACCGGAGAGGTCGTTCGTGATATAACGGAATA
CGAGTGTGAAAAGTTCATACACTTCGTTCAGCTAGAGAAGGCTGCTCGTA
ACGTAAGCAACGTGATGAAATTAAAAATCGTCTTCTGGAAACTGTATAAT
AACGGAATACAAGTGTGAAAAGTTCATACACTCCGTCTATGTAGAGAAGG
TTGCTTGTAACGGAAGCAATGCGATGAATACGATCCGAGGCCAAATCTGT
TACACGGAATTACGGGAAGCGAGTGCGAAAAGTTCATGCGCTCGTATAAG
AATATAAGTTTGTCAATTGGTAATGCTACAACACCATTATTTCCAATATA
CATACAATGCAATCATCATTTGGAATCAGCCAGACTGGATTTTAAAGtta
tataaaaataacaaaagtaaTCCTAAGTAAAATCAAGATACTTGGCGATA
attacaagtaaaaaaaaaaaatcctagtaaaatgttttctcaaaattcta
ttttatttctttttttcgtgtttttatattttattttttgtattttgatt
ctgtcttttctttttctttttcgcacgattatttatttttcttttgtatt
ttcattttctttcttatctttttttttttttttttttttttttttttttt
tttttttttttNAATTATGGTTAAAAACAATACTGAGATTTCCAAATTCC
GTAAATTATTGGTAAAAACTGAAATCTCCACGGGTTAAAGACTCAATTTA
GACTAGCAAATGGTTAGATTAGCGAACGGTAtaaatagaaatgaaatttt
gagctcGACAAACCGAAGAAGTTTAGCTATTGAAACTTACAATCTCGTTT
TGAAACATACAATGTCATCTCACGCAAGCAATTATCGATATGCCGTCGAG
CTAAAGGATTTGACCGAAATGTGGAGGAACTTCCCGCGAGTGGGCGGAGA
CCAAATTGTCCGCGAATATACTCTGAGGTCAGAGTTAAGATTGGTGAAGG
CCGTTGCGGTCAATCTGATCAAACGCGTCCACGATGTGGGAGATGATGCA
GCCCGAACAGCGATGGGGACTGCCCATTTGGATTTATATGAGTTCACATC
AGCCACCCTGGACCGCGAGCACCCGGAGGTCTCCTGGTACATGGAGGGGA
ACCTATTCAACGTAGCTGCGGGTGCTGGAGGCTTCGATCCGCCTCCCAGG
AACAGGTGGCTGGTGGATATAATCCAGAATATCCACGAGGAAGAGGCGTT
ACTGGGCAGAACCCGA
Run BLAST on NCBI

protein sequence of TCONS_00036389-protein

>TCONS_00036389-protein ID=TCONS_00036389-protein|Name=TCONS_00036389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MVRLANGINRNEILSSTNRRSLAIETYNLVLKHTMSSHASNYRYAVELKD
LTEMWRNFPRVGGDQIVREYTLRSELRLVKAVAVNLIKRVHDVGDDAART
AMGTAHLDLYEFTSATLDREHPEVSWYMEGNLFNVAAGAGGFDPPPRNRW
LVDIIQNIHEEEALLGRTR
Run BLAST on NCBI

transcript from alignment at sc0001453:18280..20474-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036389 ID=TCONS_00036389|Name=TCONS_00036389|organism=Clytia hemisphaerica|type=transcript|length=2195bp|location=Sequence derived from alignment at sc0001453:18280..20474- (Clytia hemisphaerica)
ATATTGTAGACTGGGCTAACAAAGGGGGAGACGGCTCAGCGGAGAGATCA
GTAATTTAAGACTGTATATGGTTTCGTACCATCGATTAACTTATATTCTC
ATTTTCAACTTATAATAATTTGACAGCGTTTAGTTTAAATGAAACATCTT
ATAAAATAGGTTATACACTATTCGTGTCTCTTTCAATCTCCGTCTTTCAT
CGTTTGAGTTGCAGCTTTTATAGCTGTCAACGGAATGTCAATGGAATGTC
GTTAGATTTAAATAAAGTAACAGATATTGGTCTTGGGCCGCATGGATCTC
ATTCGTATGTTTGTTGCGGTTCGAGCATGTTTCAGCATTTGCGTAGGTTT
AATCATCGATCGTTATGTAAGGTATAATTTCAGCATGTTTCAGCATTTTC
GTAAGTTTTAATCATCGATCGTTATGTGATATTGGTCTTGGTAGAGCCAT
TTTCTGATGGGGTGGCCAGCTTGTATTAAGCTCCAGCTGACATTCTCCAC
GGGTTGAATTTTTCTTGTCCCAAGAAAGTGTCAGGTTCTCCTCAAGGAAG
TGTCCCATGACATTCTCCACGGGTTGAATTTTTCTTGTCCCAAGAAAGTG
TCAGGTTCTCCTCAAGGAAGTGTCCCATGACATTCTCCACGGCGTAATCG
AACGTAGTAGTCGTAAGAAAGCGTTGGACCGGAGAGGTCGTTCGTGATAT
AACGGAATACGAGTGTGAAAAGTTCATACACTTCGTTCAGCTAGAGAAGG
CTGCTCGTAACGTAAGCAACGTGATGAAATTAAAAATCGTCTTCTGGAAA
CTGTATAATAACGGAATACAAGTGTGAAAAGTTCATACACTCCGTCTATG
TAGAGAAGGTTGCTTGTAACGGAAGCAATGCGATGAATACGATCCGAGGC
CAAATCTGTTACACGGAATTACGGGAAGCGAGTGCGAAAAGTTCATGCGC
TCGTATAAGAATATAAGTTTGTCAATTGGTAATGCTACAACACCATTATT
TCCAATATACATACAATGCAATCATCATTTGGAATCAGCCAGACTGGATT
TTAAAGTTATATAAAAATAACAAAAGTAATCCTAAGTAAAATCAAGATAC
TTGGCGATAATTACAAGTAAAAAAAAAAAATCCTAGTAAAATGTTTTCTC
AAAATTCTATTTTATTTCTTTTTTTCGTGTTTTTATATTTTATTTTTTGT
ATTTTGATTCTGTCTTTTCTTTTTCTTTTTCGCACGATTATTTATTTTTC
TTTTGTATTTTCATTTTCTTTCTTATCTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNAATTATGGTTAAAAACAATACTGAGATTT
CCAAATTCCGTAAATTATTGGTAAAAACTGAAATCTCCACGGGTTAAAGA
CTCAATTTAGACTAGCAAATGGTTAGATTAGCGAACGGTATAAATAGAAA
TGAAATTTTGAGCTCGACAAACCGAAGAAGTTTAGCTATTGAAACTTACA
ATCTCGTTTTGAAACATACAATGTCATCTCACGCAAGCAATTATCGATAT
GCCGTCGAGCTAAAGGATTTGACCGAAATGTGGAGGAACTTCCCGCGAGT
GGGCGGAGACCAAATTGTCCGCGAATATACTCTGAGGTCAGAGTTAAGGT
GAGTAACCAAGTTCAATTTTAAATGAATTCGCTGTTATTAATAATCTTGC
TAAAGCTTATCCAGTATTTTTACGTACGTTTCGCAACAACAATCACTTAA
AATGTAAAAATACTGTATATACTCACCAGGTAATGGATTAAATTTTCTAT
TGTTTACCGTCTAGATTGGTGAAGGCCGTTGCGGTCAATCTGATCAAACG
CGTCCACGATGTGGGAGATGATGCAGCCCGAACAGCGATGGGGACTGCCC
ATTTGGATTTATATGAGTTCACATCAGCCACCCTGGACCGCGAGCACCCG
GAGGTCTCCTGGTACATGGAGGGGAACCTATTCAACGTAGCTGCGGGTGC
TGGAGGCTTCGATCCGCCTCCCAGGAACAGGTGGCTGGTGGATATAATCC
AGAATATCCACGAGGTAAGAAAACAAAATTCATTTCTAAATACAGTAAGA
GATTATAGGTTATCGGTTATACAGTGTGGTTACAATATGTTAAATACAAT
TCCTTTAATTACTTTCAGGAAGAGGCGTTACTGGGCAGAACCCGA

Coding sequence (CDS) from alignment at sc0001453:18280..20474-

>TCONS_00036389 ID=TCONS_00036389|Name=TCONS_00036389|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at sc0001453:18280..20474- (Clytia hemisphaerica)
GAAGAGGCGTTACTGGGCAGAACCCGAATTGGTGAAGGCCGTTGCGGTCA
ATCTGATCAAACGCGTCCACGATGTGGGAGATGATGCAGCCCGAACAGCG
ATGGGGACTGCCCATTTGGATTTATATGAGTTCACATCAGCCACCCTGGA
CCGCGAGCACCCGGAGGTCTCCTGGTACATGGAGGGGAACCTATTCAACG
TAGCTGCGGGTGCTGGAGGCTTCGATCCGCCTCCCAGGAACAGGTGGCTG
GTGGATATAATCCAGAATATCCACGAGATGGTTAGATTAGCGAACGGTAT
AAATAGAAATGAAATTTTGAGCTCGACAAACCGAAGAAGTTTAGCTATTG
AAACTTACAATCTCGTTTTGAAACATACAATGTCATCTCACGCAAGCAAT
TATCGATATGCCGTCGAGCTAAAGGATTTGACCGAAATGTGGAGGAACTT
CCCGCGAGTGGGCGGAGACCAAATTGTCCGCGAATATACTCTGAGGTCAG
AGTTAAGGAAGAGGCGTTACTGGGCAGAACCCGAATTGGTGAAGGCCGTT
GCGGTCAATCTGATCAAACGCGTCCACGATGTGGGAGATGATGCAGCCCG
AACAGCGATGGGGACTGCCCATTTGGATTTATATGAGTTCACATCAGCCA
CCCTGGACCGCGAGCACCCGGAGGTCTCCTGGTACATGGAGGGGAACCTA
TTCAACGTAGCTGCGGGTGCTGGAGGCTTCGATCCGCCTCCCAGGAACAG
GTGGCTGGTGGATATAATCCAGAATATCCACGAGATGGTTAGATTAGCGA
ACGGTATAAATAGAAATGAAATTTTGAGCTCGACAAACCGAAGAAGTTTA
GCTATTGAAACTTACAATCTCGTTTTGAAACATACAATGTCATCTCACGC
AAGCAATTATCGATATGCCGTCGAGCTAAAGGATTTGACCGAAATGTGGA
GGAACTTCCCGCGAGTGGGCGGAGACCAAATTGTCCGCGAATATACTCTG
AGGTCAGAGTTAAGGAAGAGGCGTTACTGGGCAGAACCCGAATTGGTGAA
GGCCGTTGCGGTCAATCTGATCAAACGCGTCCACGATGTGGGAGATGATG
CAGCCCGAACAGCGATGGGGACTGCCCATTTGGATTTATATGAGTTCACA
TCAGCCACCCTGGACCGCGAGCACCCGGAGGTCTCCTGGTACATGGAGGG
GAACCTATTCAACGTAGCTGCGGGTGCTGGAGGCTTCGATCCGCCTCCCA
GGAACAGGTGGCTGGTGGATATAATCCAGAATATCCACGAGATGGTTAGA
TTAGCGAACGGTATAAATAGAAATGAAATTTTGAGCTCGACAAACCGAAG
AAGTTTAGCTATTGAAACTTACAATCTCGTTTTGAAACATACAATGTCAT
CTCACGCAAGCAATTATCGATATGCCGTCGAGCTAAAGGATTTGACCGAA
ATGTGGAGGAACTTCCCGCGAGTGGGCGGAGACCAAATTGTCCGCGAATA
TACTCTGAGGTCAGAGTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021433XLOC_021433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036389-exon-sc0001453-1575043694:20129..20474TCONS_00036389-exon-sc0001453-1575043694:20129..20474Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1575043694:18827..20069TCONS_00036389-exon-sc0001453-1575043694:18827..20069Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1575043694:18411..18660TCONS_00036389-exon-sc0001453-1575043694:18411..18660Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1575043694:18280..18306TCONS_00036389-exon-sc0001453-1575043694:18280..18306Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1510915933:20129..20474TCONS_00036389-exon-sc0001453-1510915933:20129..20474Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1510915933:18827..20069TCONS_00036389-exon-sc0001453-1510915933:18827..20069Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1510915933:18411..18660TCONS_00036389-exon-sc0001453-1510915933:18411..18660Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1510915933:18280..18306TCONS_00036389-exon-sc0001453-1510915933:18280..18306Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1491911889:20129..20474TCONS_00036389-exon-sc0001453-1491911889:20129..20474Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1491911889:18827..20069TCONS_00036389-exon-sc0001453-1491911889:18827..20069Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1491911889:18411..18660TCONS_00036389-exon-sc0001453-1491911889:18411..18660Clytia hemisphaericaexon
TCONS_00036389-exon-sc0001453-1491911889:18280..18306TCONS_00036389-exon-sc0001453-1491911889:18280..18306Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036389-proteinTCONS_00036389-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001453supercontigsc0001453:18280..20474 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28519	2.60008	3.64698	6.76202	22.182	14.2468	38.1261	16.0805	3.22981	4.66752	2.42935	4.7107	7.95434	6.41175	1.89143	3.36908	1.63209	7.82734	1.06602	21.5933	1.53003	2.30252	1.03509	1.40906	33.3405	24.7424	1.31764	2.20759	1.21305	2.19538
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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