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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036382 ID=TCONS_00036382|Name=TCONS_00036382|organism=Clytia hemisphaerica|type=transcript|length=902bp
CGAGATCAAAGCTGCTGAGACGTATTTCTACAGGAAAGCATCACAAGAGA
TAATTCAATTccttccaaaatcaaaatatgaaaatatcacCAGACTCAAC
GACAATATAATCTTGGTGTACACTGGTCAAATCCTCGCCGATGATCAAGT
ATCCATAGTTGGAAGTTTCACCAAATCAATGAAAGATTTATCTTCGACAT
CCTTTTGTGTACCAGTTATAGACAGAAGATCACCAATTGCATATAGTATC
ATCCTCGACACACATTGGAATCATCCAGAAGTCAGTCATGCTGGGATAGA
GTCCACACTTCGCTATGTCCTCAAGAAAGTTTACATCCTTGAAGGTCGAA
TTCTTATCAAATCCATCAAAATTTCGTGTCAACGTTGCAAGTTTTTGGCC
AAACGAACCATCGACATGGCTATGGGTCCAATCTCCAGATGCAATATCAC
CATAGCTCCAGCATTCTTCTACACCCAAGTCGACCTATCTGGACCGTTTC
AATGCTACACACCATATCACAAACGAAAGACAGTTAAAATATGGTTGGCT
GTCTTCTGCTGTTGCTCTACATCAGCTGTCAAAATAAAGGTTTTGGACGA
TTATGGAACGACATCATTCATCCTTGCTTTCAATCGCTTCTCCTGTGACC
ACGGTTACCCGAAACTACTTCTTTGTGACGAAGGAGGTCAACTCATCAAA
GCCTGCAAAGAAATGCGACTTGATTTCATTGATATCAAATCCAAATTGAT
GAAACAAGCACGTGTTGAGTTCGAATTATGTCCAGTTCAAGGCCGCTCAA
TGCATGGAAAAGTAGAACGAAAAATTCGTGAAATCAACAGTTCGATCGAA
AAATCTGTTCACAACCAACGTCTTTCAATCCTTCAGTGGGAAACGTTATC
AT Run BLAST on NCBI protein sequence of TCONS_00036382-protein >TCONS_00036382-protein ID=TCONS_00036382-protein|Name=TCONS_00036382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
EIKAAETYFYRKASQEIIQFLPKSKYENITRLNDNIILVYTGQILADDQV
SIVGSFTKSMKDLSSTSFCVPVIDRRSPIAYSIILDTHWNHPEVSHAGIE
STLRYVLKKVYILEGRILIKSIKISCQRCKFLAKRTIDMAMGPISRCNIT
IAPAFFYTQVDLSGPFQCYTPYHKRKTVKIWLAVFCCCSTSAVKIKVLDD
YGTTSFILAFNRFSCDHGYPKLLLCDEGGQLIKACKEMRLDFIDIKSKLM
KQARVEFELCPVQGRSMHGKVERKIREINSSIEKSVHNQRLSILQWETLS Run BLAST on NCBI transcript from alignment at sc0001452:43693..44594 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036382 ID=TCONS_00036382|Name=TCONS_00036382|organism=Clytia hemisphaerica|type=transcript|length=902bp|location=Sequence derived from alignment at sc0001452:43693..44594 (Clytia hemisphaerica)
ATGATAACGTTTCCCACTGAAGGATTGAAAGACGTTGGTTGTGAACAGAT
TTTTCGATCGAACTGTTGATTTCACGAATTTTTCGTTCTACTTTTCCATG
CATTGAGCGGCCTTGAACTGGACATAATTCGAACTCAACACGTGCTTGTT
TCATCAATTTGGATTTGATATCAATGAAATCAAGTCGCATTTCTTTGCAG
GCTTTGATGAGTTGACCTCCTTCGTCACAAAGAAGTAGTTTCGGGTAACC
GTGGTCACAGGAGAAGCGATTGAAAGCAAGGATGAATGATGTCGTTCCAT
AATCGTCCAAAACCTTTATTTTGACAGCTGATGTAGAGCAACAGCAGAAG
ACAGCCAACCATATTTTAACTGTCTTTCGTTTGTGATATGGTGTGTAGCA
TTGAAACGGTCCAGATAGGTCGACTTGGGTGTAGAAGAATGCTGGAGCTA
TGGTGATATTGCATCTGGAGATTGGACCCATAGCCATGTCGATGGTTCGT
TTGGCCAAAAACTTGCAACGTTGACACGAAATTTTGATGGATTTGATAAG
AATTCGACCTTCAAGGATGTAAACTTTCTTGAGGACATAGCGAAGTGTGG
ACTCTATCCCAGCATGACTGACTTCTGGATGATTCCAATGTGTGTCGAGG
ATGATACTATATGCAATTGGTGATCTTCTGTCTATAACTGGTACACAAAA
GGATGTCGAAGATAAATCTTTCATTGATTTGGTGAAACTTCCAACTATGG
ATACTTGATCATCGGCGAGGATTTGACCAGTGTACACCAAGATTATATTG
TCGTTGAGTCTGgtgatattttcatattttgattttggaaggAATTGAAT
TATCTCTTGTGATGCTTTCCTGTAGAAATACGTCTCAGCAGCTTTGATCT
CG Coding sequence (CDS) from alignment at sc0001452:43693..44594 >TCONS_00036382 ID=TCONS_00036382|Name=TCONS_00036382|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0001452:43693..44594 (Clytia hemisphaerica)
TGATAACGTTTCCCACTGAAGGATTGAAAGACGTTGGTTGTGAACAGATT
TTTCGATCGAACTGTTGATTTCACGAATTTTTCGTTCTACTTTTCCATGC
ATTGAGCGGCCTTGAACTGGACATAATTCGAACTCAACACGTGCTTGTTT
CATCAATTTGGATTTGATATCAATGAAATCAAGTCGCATTTCTTTGCAGG
CTTTGATGAGTTGACCTCCTTCGTCACAAAGAAGTAGTTTCGGGTAACCG
TGGTCACAGGAGAAGCGATTGAAAGCAAGGATGAATGATGTCGTTCCATA
ATCGTCCAAAACCTTTATTTTGACAGCTGATGTAGAGCAACAGCAGAAGA
CAGCCAACCATATTTTAACTGTCTTTCGTTTGTGATATGGTGTGTAGCAT
TGAAACGGTCCAGATAGGTCGACTTGGGTGTAGAAGAATGCTGGAGCTAT
GGTGATATTGCATCTGGAGATTGGACCCATAGCCATGTCGATGGTTCGTT
TGGCCAAAAACTTGCAACGTTGACACGAAATTTTGATGGATTTGATAAGA
ATTCGACCTTCAAGGATGTAAACTTTCTTGAGGACATAGCGAAGTGTGGA
CTCTATCCCAGCATGACTGACTTCTGGATGATTCCAATGTGTGTCGAGGA
TGATACTATATGCAATTGGTGATCTTCTGTCTATAACTGGTACACAAAAG
GATGTCGAAGATAAATCTTTCATTGATTTGGTGAAACTTCCAACTATGGA
TACTTGATCATCGGCGAGGATTTGACCAGTGTACACCAAGATTATATTGT
CGTTGAGTCTGgtgatattttcatattttgattttggaaggAATTGAATT
ATCTCTTGTGATGCTTTCCTGTAGAAATACGTCTCAGCAGCTTTGATCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036382-exon-sc0001452-1491911889:43693..44594 | TCONS_00036382-exon-sc0001452-1491911889:43693..44594 | Clytia hemisphaerica | exon |
| TCONS_00036382-exon-sc0001452-1510915933:43693..44594 | TCONS_00036382-exon-sc0001452-1510915933:43693..44594 | Clytia hemisphaerica | exon |
| TCONS_00036382-exon-sc0001452-1575043694:43693..44594 | TCONS_00036382-exon-sc0001452-1575043694:43693..44594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001452 | supercontig | sc0001452:43693..44594 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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