TCONS_00036378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036378
Unique NameTCONS_00036378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036378 ID=TCONS_00036378|Name=TCONS_00036378|organism=Clytia hemisphaerica|type=transcript|length=543bp
CCGTTGGATGCGACGGTGCACAATTATACAGTACCTGCTGTCAAAGGTTT
CTTCCATTCCATTTCCTTGTCACGTGGTAATTCACTCCAAGACACTTTGA
GATTGTTGACGTTGTGGTTCGATTTTGGACATTACGATGACGTGCACAAA
GCACTTGTCGATGGATTGAAAACAATCCATATTGATAACTGGCTCCAGGT
GATTCCGCAGTTGATAGCGCGTATCGATACACCACGACAAATGATTGGTC
GACTGATTCATCAACTCTTATCCGACGTCGGAAAGCAACATCCTCAGGCT
TTGATCTATCCGTTAACCGTCGCATCGAAGTCAGCAAGTGCTGATCGCCG
AAACGCCGCCGAACAAATCCTCTGTAGTCTACGTGAACACAGTCTAGCGT
TAGTAGAACAGGCTATGATGGTAAGCGAAGAGTTGATCCGAGTTACTATC
CTGTGGCATGAATTATGGGCTGAAGGACTGGAAGAAGCATCTCGGTTATA
TTTTGGTGAACGTAACGTGAAAGGAATGTTTGCCGTGTTGGAN
Run BLAST on NCBI

protein sequence of TCONS_00036378-protein

>TCONS_00036378-protein ID=TCONS_00036378-protein|Name=TCONS_00036378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
PLDATVHNYTVPAVKGFFHSISLSRGNSLQDTLRLLTLWFDFGHYDDVHK
ALVDGLKTIHIDNWLQVIPQLIARIDTPRQMIGRLIHQLLSDVGKQHPQA
LIYPLTVASKSASADRRNAAEQILCSLREHSLALVEQAMMVSEELIRVTI
LWHELWAEGLEEASRLYFGERNVKGMFAVLX
Run BLAST on NCBI

transcript from alignment at sc0001452:40122..41574-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036378 ID=TCONS_00036378|Name=TCONS_00036378|organism=Clytia hemisphaerica|type=transcript|length=1453bp|location=Sequence derived from alignment at sc0001452:40122..41574- (Clytia hemisphaerica)
CCGTTGGATGCGACGGTGCACAATTATACAGTACCTGCTGTCAAAGGTTT
CTTCCATTCCATTTCCTTGTCACGTGGTAATTCACTCCAAGACACTTTGA
GGTCAGTTCACTGTTTAGAATTATTTCATCGTAATCCACTTTTCACTTAA
CAAGAATTCTCTAGGACTTAATACTTAATACTACTTGTTGATGGTTCAAA
AATTGACAGAGATTGGAAACTTTCATCGTAATGTTTATAGTTTCCTACTT
CGCCTTCATGATTCAAACTTGTCTTAGAACCACGAACTTTTGGAAGTACC
AGTCGTTAATTTTCAAAGTAATCTTCTTTTAACCTAGTCTACCTCCTTTT
TTCTGTTTGTCCAATAGATTGTTGACGTTGTGGTTCGATTTTGGACATTA
CGATGACGTGCACAAAGCACTTGTCGATGGATTGAAAACAATCCATATTG
ATAACTGGCTCCAGGTATGTTTTAGTCTATTTGAGCTTTAAGCGGTTTAA
CTCATTGTCTTTCAAAATTCACCCATTGTTTTATTGTTGAATATCCTTTT
CCATGGAGATGGAGAATTTTCATAACCTTGAAAGTTTTTCATCCCTCGCC
ACCTTTGATTTAATTGAATCCGATAAAGGCGAACGTCGAAACGTCGTATA
TTACACAACTGTGTTTTAACTGTTCTACTATTATATGTAAACTGAAATTA
ACATTGACTTTATTATTATTTAACTTGAATATAGGTGATTCCGCAGTTGA
TAGCGCGTATCGATACACCACGACAAATGATTGGTCGACTGATTCATCAA
CTCTTATCCGACGTCGGAAAGCAACATCCTCAGGTAACAGAATCCCATAA
TCCTCAATGTGTGTAAATAATTTTTCTAACGGAGACACCTGAAAAAAGCC
GGGATCTGAACCTTCTCCGTTGCTAAAAATAGAAGCACAGTGGTCAAAAT
CCCGCGTTTTCGGGTGCTTCCATTAAGAAAATATGACATCGTGATTTTCT
CGTATCAAGGATCCTTAAATTCTTTAGTGTGTGAAATTTTGAATCTCTGA
ACTACCCGAACAATAATTTTAAACTATAGAGATTATCATGAGATTATCCT
TCAGCTTGCACACCTTTCCATTGAGATTCGATAGAATAGAACGTAAGGTC
AATGACTTTCTAAGTTATCTTAACTCATCTTTGTATTCAAATTTCATCTA
TTTTCAGGCTTTGATCTATCCGTTAACCGTCGCATCGAAGTCAGCAAGTG
CTGATCGCCGAAACGCCGCCGAACAAATCCTCTGTAGTCTACGTGAACAC
AGTCTAGCGTTAGTAGAACAGGCTATGATGGTAAGCGAAGAGTTGATCCG
AGTTACTATCCTGTGGCATGAATTATGGGCTGAAGGACTGGAAGAAGCAT
CTCGGTTATATTTTGGTGAACGTAACGTGAAAGGAATGTTTGCCGTGTTG
GAN

Coding sequence (CDS) from alignment at sc0001452:40122..41574-

>TCONS_00036378 ID=TCONS_00036378|Name=TCONS_00036378|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at sc0001452:40122..41574- (Clytia hemisphaerica)
GCTTTGATCTATCCGTTAACCGTCGCATCGAAGTCAGCAAGTGCTGATCG
CCGAAACGCCGCCGAACAAATCCTCTGTAGTCTACGTGAACACAGTCTAG
CGTTAGTAGAACAGGCTATGATGGTAAGCGAAGAGTTGATCCGAGTTACT
ATCCTGTGGCATGAATTATGGGCTGAAGGACTGGAAGAAGCATCTCGGTT
ATATTTTGGTGAACGTAACGTGAAAGGAATGTTTGCCGTGTTGGANGTGA
TTCCGCAGTTGATAGCGCGTATCGATACACCACGACAAATGATTGGTCGA
CTGATTCATCAACTCTTATCCGACGTCGGAAAGCAACATCCTCAGATTGT
TGACGTTGTGGTTCGATTTTGGACATTACGATGACGTGCACAAAGCACTT
GTCGATGGATTGAAAACAATCCATATTGATAACTGGCTCCAGCCGTTGGA
TGCGACGGTGCACAATTATACAGTACCTGCTGTCAAAGGTTTCTTCCATT
CCATTTCCTTGTCACGTGGTAATTCACTCCAAGACACTTTGAGGCTTTGA
TCTATCCGTTAACCGTCGCATCGAAGTCAGCAAGTGCTGATCGCCGAAAC
GCCGCCGAACAAATCCTCTGTAGTCTACGTGAACACAGTCTAGCGTTAGT
AGAACAGGCTATGATGGTAAGCGAAGAGTTGATCCGAGTTACTATCCTGT
GGCATGAATTATGGGCTGAAGGACTGGAAGAAGCATCTCGGTTATATTTT
GGTGAACGTAACGTGAAAGGAATGTTTGCCGTGTTGGANGTGATTCCGCA
GTTGATAGCGCGTATCGATACACCACGACAAATGATTGGTCGACTGATTC
ATCAACTCTTATCCGACGTCGGAAAGCAACATCCTCAGATTGTTGACGTT
GTGGTTCGATTTTGGACATTACGATGACGTGCACAAAGCACTTGTCGATG
GATTGAAAACAATCCATATTGATAACTGGCTCCAGCCGTTGGATGCGACG
GTGCACAATTATACAGTACCTGCTGTCAAAGGTTTCTTCCATTCCATTTC
CTTGTCACGTGGTAATTCACTCCAAGACACTTTGAGGCTTTGATCTATCC
GTTAACCGTCGCATCGAAGTCAGCAAGTGCTGATCGCCGAAACGCCGCCG
AACAAATCCTCTGTAGTCTACGTGAACACAGTCTAGCGTTAGTAGAACAG
GCTATGATGGTAAGCGAAGAGTTGATCCGAGTTACTATCCTGTGGCATGA
ATTATGGGCTGAAGGACTGGAAGAAGCATCTCGGTTATATTTTGGTGAAC
GTAACGTGAAAGGAATGTTTGCCGTGTTGGANGTGATTCCGCAGTTGATA
GCGCGTATCGATACACCACGACAAATGATTGGTCGACTGATTCATCAACT
CTTATCCGACGTCGGAAAGCAACATCCTCAGATTGTTGACGTTGTGGTTC
GATTTTGGACATTACGATGACGTGCACAAAGCACTTGTCGATGGATTGAA
AACAATCCATATTGATAACTGGCTCCAGCCGTTGGATGCGACGGTGCACA
ATTATACAGTACCTGCTGTCAAAGGTTTCTTCCATTCCATTTCCTTGTCA
CGTGGTAATTCACTCCAAGACACTTTGAGGCTTTGATCTATCCGTTAACC
GTCGCATCGAAGTCAGCAAGTGCTGATCGCCGAAACGCCGCCGAACAAAT
CCTCTGTAGTCTACGTGAACACAGTCTAGCGTTAGTAGAACAGGCTATGA
TGGTAAGCGAAGAGTTGATCCGAGTTACTATCCTGTGGCATGAATTATGG
GCTGAAGGACTGGAAGAAGCATCTCGGTTATATTTTGGTGAACGTAACGT
GAAAGGAATGTTTGCCGTGTTGGANGTGATTCCGCAGTTGATAGCGCGTA
TCGATACACCACGACAAATGATTGGTCGACTGATTCATCAACTCTTATCC
GACGTCGGAAAGCAACATCCTCAGATTGTTGACGTTGTGGTTCGATTTTG
GACATTACGATGACGTGCACAAAGCACTTGTCGATGGATTGAAAACAATC
CATATTGATAACTGGCTCCAGCCGTTGGATGCGACGGTGCACAATTATAC
AGTACCTGCTGTCAAAGGTTTCTTCCATTCCATTTCCTTGTCACGTGGTA
ATTCACTCCAAGACACTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021422XLOC_021422Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036378-proteinTCONS_00036378-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036378-exon-sc0001452-1575043694:41474..41574TCONS_00036378-exon-sc0001452-1575043694:41474..41574Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1575043694:41111..41207TCONS_00036378-exon-sc0001452-1575043694:41111..41207Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1575043694:40742..40840TCONS_00036378-exon-sc0001452-1575043694:40742..40840Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1575043694:40122..40367TCONS_00036378-exon-sc0001452-1575043694:40122..40367Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1510915933:41474..41574TCONS_00036378-exon-sc0001452-1510915933:41474..41574Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1510915933:41111..41207TCONS_00036378-exon-sc0001452-1510915933:41111..41207Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1510915933:40742..40840TCONS_00036378-exon-sc0001452-1510915933:40742..40840Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1510915933:40122..40367TCONS_00036378-exon-sc0001452-1510915933:40122..40367Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1491911889:41474..41574TCONS_00036378-exon-sc0001452-1491911889:41474..41574Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1491911889:41111..41207TCONS_00036378-exon-sc0001452-1491911889:41111..41207Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1491911889:40742..40840TCONS_00036378-exon-sc0001452-1491911889:40742..40840Clytia hemisphaericaexon
TCONS_00036378-exon-sc0001452-1491911889:40122..40367TCONS_00036378-exon-sc0001452-1491911889:40122..40367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001452supercontigsc0001452:40122..41574 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.49766	6.83641	3.12698	3.17693	29.3652	20.4881	26.3568	30.556	22.0195	23.9485	18.6175	19.3834	15.1178	18.4145	12.3647	15.8583	18.3401	16.8365	9.71069	11.6976	12.5294	9.61797	10.7176	12.4012	39.1173	37.7611	10.7781	9.79281	7.89908	5.52544
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009076FRB_dom
IPR011989ARM-like
IPR003151PIK-rel_kinase_FAT
IPR014009PIK_FAT
Vocabulary: Molecular Function
TermDefinition
GO:0044877macromolecular complex binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0044877 macromolecular complex binding
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00036378 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 1.238e-87
Identity = 135/179 (75.42%), Postives = 156/179 (87.15%), Query Frame = 1 
Query:    4 LDATVHNYTVPAVKGFFHSISLSRGNSLQDTLRLLTLWFDFGHYDDVHKALVDGLKTIHIDNWLQVIPQLIARIDTPRQMIGRLIHQLLSDVGKQHPQALIYPLTVASKSASADRRNAAEQILCSLREHSLALVEQAMMVSEELIRVTILWHELWAEGLEEASRLYFGERNVKGMFAVL 540
            L  T+  YTVPAV+GFF SISLSRGN+LQDTLR+LTLWFD+GH+ DV++ALV+G+K I ID WLQVIPQLIARIDTPR ++GRLIHQLL+D+G+ HPQALIYPLTVASKS +  R NAA +IL ++ EHS  LV+QAMMVSEELIRV ILWHE+W EGLEEASRLYFGERNVKGMF VL
Sbjct: 1873 LSKTLLMYTVPAVQGFFRSISLSRGNNLQDTLRVLTLWFDYGHWPDVNEALVEGVKAIQIDTWLQVIPQLIARIDTPRPLVGRLIHQLLTDIGRYHPQALIYPLTVASKSTTTARHNAANKILKNMCEHSNTLVQQAMMVSEELIRVAILWHEMWHEGLEEASRLYFGERNVKGMFEVL 2051
The following BLAST results are available for this feature:
BLAST of TCONS_00036378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTOR1.238e-8775.42Serine/threonine-protein kinase mTOR OS=Homo sapie... [more]
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