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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036375 ID=TCONS_00036375|Name=TCONS_00036375|organism=Clytia hemisphaerica|type=transcript|length=2837bp
ccgtagtgcagtggtagagcatccggctacggttcgcaaggttgtgggtt
caactccaagccgggtcataccaaagatttccaaaaaggtacttgatgcc
tctctgcttgaagctcagcaattaagagaaggatcaagggtaagtggagc
aatccagggagaaagagtaacgccctcccctaccttcgggtagatagcta
tcgaaagaggagccttcgggtcgcctccggttgcggtcgcagacttacct
actaggtccaaaaaacatttttgaaaatgtgcggataccccctggaaaat
actCCTTTAAATTATTGAACATTGTTGGTAAATTAGTTTTTTAATAATTC
ATTTCGATTGTTTCTTATTCTCTTAACACAAGAAAAGGTTTGAATTTGAT
GGCAATTCAATTGCTTGGTTGTTGAGGTCTGAaatgtttgattaaaaaaa
ttgacacgaTTTGATGTTTCTCGGATTATAGACGAAGTCATGCTAAAGTT
GTTCCTTGACAAGCTTGGAAAACATTCAATAGTAAATGATTGAAATTGAC
GGCCATTTGATGGCTTGATCGAGTACTacataaataaaaataacactTTA
TAATAAGTCGATATTCACCAAAAAGAGCAATCTGGAATTTAAAACTGTGT
TGAtcgaattcattttttttatcgTAACATCAAGAAGTGGCCTTAAAATG
TAAAGCGTAACCTACAAATATTTGACAGACAAACGGTTAAAAGAATCCAA
TAAAAGCTTGATGATGATATTATCAATAATGATACCTTGTATTCTAACCT
TGGATTTCGGTTTTGCTAGAGGCAACCCTGACCCTCATACGCCTTTCCTA
CCGTTCAAACACCTGCATACAAACACAGCTATTAATGGGCCTCGACCATG
GTTTGATGGAGAAGTGCCTTCCAAAGATCATTGCTTTCACAAATGCCTCA
AACAAAATTTCACAAATTGCGAATATGTCCAATACAAAGAGGTTTCGGCA
ACAACATGGCTTTGCAAACTATATGGAATCATATCAGATCTGTCGAGTTA
TCTGGTCTCTACAGAAGGTGAAATGTTGGCTACTGCAGTCCACCAAAACA
TAGATTGCGCCGATTGGATGAAGCTTGAGTACCATCAGTCGGGTGTTTAC
TTTATCTATTACAATCgagaaaaattcaaagtgtgGTGTGAGATGATTCC
TGGTAAAGCCAAGATAATCATTCAAAAGAGATTTGATGGTTCGGTAGACT
TCTATCAAAATTGGGAAAAGTATAAAAATGGATTTGGTGACATTGGAGGC
GAGCATTGGTTGGGTCTTGAGAATATACATAAGTTGACTAAGGGACGAAA
CATGGAAATTGCACTGCAGGCAAATTCTTTCCAAGATGAGACACAATATG
CTGTGTACAAAAACTTTTATATTGAAGGCGAAGATTTATTCTATCAATTA
AATGCTGGTGTGTTTGTTGAAGGAACTCCTTATCATCATGATTGGACTGT
ATCAGCTGACGGCATGAAATTTTCAACCTTTGATTCTGATCAAGACCTCG
CGGATTTAATTAATTGTGCAGTAACATATCCATCGGGGTGGTGGAATGAG
AGGTGCTTCAATATCAACTTCAATGGTGTTTATCAACATAGCGAAACACT
GACTTCTAGAGCTCGAGGTATTATTTGGCAAGCTtggaaaggatataaaa
aaggtTTGAAATCGACTTCCATGGCCATTCGAAGGCTTGATTGAGGACTG
AAATATTTAATTACAAGACAATTGGAAACTTGATGGACTGAACTATTTAA
TTAcaagtcaattgaaaatttgatgCCATTCGAGATACAGAATTTCAAAT
GATGCTCTTGGACAAGCTTGAAATACATTGAACTGTAAAGGTTTGAAATT
GGCTGGTATATTCAAAGGTACGAAAATATTTAGCAAACACTTGACTTCAA
TCGCTGTCTTTCCAAAGGTTTGGTTGAGGATTGGCATATTTCATTTCTCT
ATTGCTACGGTAAGATGAAAATAGGAAGCCACCGGAAAGTCTAAAAAGAC
ATTTTCACATTATACTTAAACAAGTAAATAGAAATCGTTctgtatttaaa
aattttcctttatCCAGGATAATATTTCTCGGGatagatgaaaataaaaa
ctaatactgaaaaatgctctatGGACgagtttgaattgaattgaatggta
aacgtcaaaaaattgaaacagacGTGGATGGttaagaaaaaattacatta
aaaGGGCTTTTCCAGTTACTAAAGTAAGGATGTTTGAAATGTGGTAGAGT
TCCATAGAGCTAAAAAAAATGTTCTCTTTTCTGtaaaaattcagaatttt
tgAGTGGTTCGGACCTTAATATTCCGAGGATGTATATAACAGAAGGCTAG
AGGATGTTTATTTTCTCGCCCATAAACGATTGAAAATGACAGTTAATTCA
TCGTTCATGGGACCAaacattttcttcgaattaaaaaaaagattcgaatt
acagagagtaatttaaaccactttccagtggaggggaccaatattttagt
tcgaattaaatttaattaatttatcATTTAATTTAATCATTTAAATTTAC
ATTAATCATTATAGCACTTTTTCAGGCAcgtttatataaaaaataatatt
aaaatcaCAATCGAAGCTTTACGCACACGAAACTATTTTGTCATGGTTAT
TAgtattcttttgatatttttgacattttgacattttttcttCAGCTCGG
ATATCCATGGGCTGCGAAACTTGAAAAATGGATATCCTAAACAGGAGAAG
GGGAAACAGAAAATTTCTAGAAAACACTATTCGTTGT Run BLAST on NCBI protein sequence of TCONS_00036375-protein >TCONS_00036375-protein ID=TCONS_00036375-protein|Name=TCONS_00036375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MMILSIMIPCILTLDFGFARGNPDPHTPFLPFKHLHTNTAINGPRPWFDG
EVPSKDHCFHKCLKQNFTNCEYVQYKEVSATTWLCKLYGIISDLSSYLVS
TEGEMLATAVHQNIDCADWMKLEYHQSGVYFIYYNREKFKVWCEMIPGKA
KIIIQKRFDGSVDFYQNWEKYKNGFGDIGGEHWLGLENIHKLTKGRNMEI
ALQANSFQDETQYAVYKNFYIEGEDLFYQLNAGVFVEGTPYHHDWTVSAD
GMKFSTFDSDQDLADLINCAVTYPSGWWNERCFNINFNGVYQHSETLTSR
ARGIIWQAWKGYKKGLKSTSMAIRRLD Run BLAST on NCBI transcript from alignment at sc0001451:56407..59243 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036375 ID=TCONS_00036375|Name=TCONS_00036375|organism=Clytia hemisphaerica|type=transcript|length=2837bp|location=Sequence derived from alignment at sc0001451:56407..59243 (Clytia hemisphaerica)
ACAACGAATAGTGTTTTCTAGAAATTTTCTGTTTCCCCTTCTCCTGTTTA
GGATATCCATTTTTCAAGTTTCGCAGCCCATGGATATCCGAGCTGaagaa
aaaatgtcaaaatgtcaaaaatatcaaaagaatacTAATAACCATGACAA
AATAGTTTCGTGTGCGTAAAGCTTCGATTGtgattttaatattatttttt
atataaacgTGCCTGAAAAAGTGCTATAATGATTAATGTAAATTTAAATG
ATTAAATTAAATgataaattaattaaatttaattcgaactaaaatattgg
tcccctccactggaaagtggtttaaattactctctgtaattcgaatcttt
tttttaattcgaagaaaatgttTGGTCCCATGAACGATGAATTAACTGTC
ATTTTCAATCGTTTATGGGCGAGAAAATAAACATCCTCTAGCCTTCTGTT
ATATACATCCTCGGAATATTAAGGTCCGAACCACTcaaaaattctgaatt
tttaCAGAAAAGAGAACATTTTTTTTAGCTCTATGGAACTCTACCACATT
TCAAACATCCTTACTTTAGTAACTGGAAAAGCCCttttaatgtaattttt
tcttaaCCATCCACgtctgtttcaattttttgacgtttaccattcaattc
aattcaaactcGTCCatagagcatttttcagtattagtttttattttcat
ctatCCCGAGAAATATTATCCTGGataaaggaaaatttttaaatacagAA
CGATTTCTATTTACTTGTTTAAGTATAATGTGAAAATGTCTTTTTAGACT
TTCCGGTGGCTTCCTATTTTCATCTTACCGTAGCAATAGAGAAATGAAAT
ATGCCAATCCTCAACCAAACCTTTGGAAAGACAGCGATTGAAGTCAAGTG
TTTGCTAAATATTTTCGTACCTTTGAATATACCAGCCAATTTCAAACCTT
TACAGTTCAATGTATTTCAAGCTTGTCCAAGAGCATCATTTGAAATTCTG
TATCTCGAATGGcatcaaattttcaattgacttgTAATTAAATAGTTCAG
TCCATCAAGTTTCCAATTGTCTTGTAATTAAATATTTCAGTCCTCAATCA
AGCCTTCGAATGGCCATGGAAGTCGATTTCAAaccttttttatatccttt
ccaAGCTTGCCAAATAATACCTCGAGCTCTAGAAGTCAGTGTTTCGCTAT
GTTGATAAACACCATTGAAGTTGATATTGAAGCACCTCTCATTCCACCAC
CCCGATGGATATGTTACTGCACAATTAATTAAATCCGCGAGGTCTTGATC
AGAATCAAAGGTTGAAAATTTCATGCCGTCAGCTGATACAGTCCAATCAT
GATGATAAGGAGTTCCTTCAACAAACACACCAGCATTTAATTGATAGAAT
AAATCTTCGCCTTCAATATAAAAGTTTTTGTACACAGCATATTGTGTCTC
ATCTTGGAAAGAATTTGCCTGCAGTGCAATTTCCATGTTTCGTCCCTTAG
TCAACTTATGTATATTCTCAAGACCCAACCAATGCTCGCCTCCAATGTCA
CCAAATCCATTTTTATACTTTTCCCAATTTTGATAGAAGTCTACCGAACC
ATCAAATCTCTTTTGAATGATTATCTTGGCTTTACCAGGAATCATCTCAC
ACcacactttgaatttttctcGATTGTAATAGATAAAGTAAACACCCGAC
TGATGGTACTCAAGCTTCATCCAATCGGCGCAATCTATGTTTTGGTGGAC
TGCAGTAGCCAACATTTCACCTTCTGTAGAGACCAGATAACTCGACAGAT
CTGATATGATTCCATATAGTTTGCAAAGCCATGTTGTTGCCGAAACCTCT
TTGTATTGGACATATTCGCAATTTGTGAAATTTTGTTTGAGGCATTTGTG
AAAGCAATGATCTTTGGAAGGCACTTCTCCATCAAACCATGGTCGAGGCC
CATTAATAGCTGTGTTTGTATGCAGGTGTTTGAACGGTAGGAAAGGCGTA
TGAGGGTCAGGGTTGCCTCTAGCAAAACCGAAATCCAAGGTTAGAATACA
AGGTATCATTATTGATAATATCATCATCAAGCTTTTATTGGATTCTTTTA
ACCGTTTGTCTGTCAAATATTTGTAGGTTACGCTTTACATTTTAAGGCCA
CTTCTTGATGTTAcgataaaaaaaatgaattcgaTCAACACAGTTTTAAA
TTCCAGATTGCTCTTTTTGGTGAATATCGACTTATTATAAagtgttattt
ttatttatgtAGTACTCGATCAAGCCATCAAATGGCCGTCAATTTCAATC
ATTTACTATTGAATGTTTTCCAAGCTTGTCAAGGAACAACTTTAGCATGA
CTTCGTCTATAATCCGAGAAACATCAAAtcgtgtcaatttttttaatcaa
acattTCAGACCTCAACAACCAAGCAATTGAATTGCCATCAAATTCAAAC
CTTTTCTTGTGTTAAGAGAATAAGAAACAATCGAAATGAATTATTAAAAA
ACTAATTTACCAACAATGTTCAATAATTTAAAGGagtattttccaggggg
tatccgcacattttcaaaaatgttttttggacctagtaggtaagtctgcg
accgcaaccggaggcgacccgaaggctcctctttcgatagctatctaccc
gaaggtaggggagggcgttactctttctccctggattgctccacttaccc
ttgatccttctcttaattgctgagcttcaagcagagaggcatcaagtacc
tttttggaaatctttggtatgacccggcttggagttgaacccacaacctt
gcgaaccgtagccggatgctctaccactgcactacgg Coding sequence (CDS) from alignment at sc0001451:56407..59243 >TCONS_00036375 ID=TCONS_00036375|Name=TCONS_00036375|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0001451:56407..59243 (Clytia hemisphaerica)
TCAATCAAGCCTTCGAATGGCCATGGAAGTCGATTTCAAaccttttttat
atcctttccaAGCTTGCCAAATAATACCTCGAGCTCTAGAAGTCAGTGTT
TCGCTATGTTGATAAACACCATTGAAGTTGATATTGAAGCACCTCTCATT
CCACCACCCCGATGGATATGTTACTGCACAATTAATTAAATCCGCGAGGT
CTTGATCAGAATCAAAGGTTGAAAATTTCATGCCGTCAGCTGATACAGTC
CAATCATGATGATAAGGAGTTCCTTCAACAAACACACCAGCATTTAATTG
ATAGAATAAATCTTCGCCTTCAATATAAAAGTTTTTGTACACAGCATATT
GTGTCTCATCTTGGAAAGAATTTGCCTGCAGTGCAATTTCCATGTTTCGT
CCCTTAGTCAACTTATGTATATTCTCAAGACCCAACCAATGCTCGCCTCC
AATGTCACCAAATCCATTTTTATACTTTTCCCAATTTTGATAGAAGTCTA
CCGAACCATCAAATCTCTTTTGAATGATTATCTTGGCTTTACCAGGAATC
ATCTCACACcacactttgaatttttctcGATTGTAATAGATAAAGTAAAC
ACCCGACTGATGGTACTCAAGCTTCATCCAATCGGCGCAATCTATGTTTT
GGTGGACTGCAGTAGCCAACATTTCACCTTCTGTAGAGACCAGATAACTC
GACAGATCTGATATGATTCCATATAGTTTGCAAAGCCATGTTGTTGCCGA
AACCTCTTTGTATTGGACATATTCGCAATTTGTGAAATTTTGTTTGAGGC
ATTTGTGAAAGCAATGATCTTTGGAAGGCACTTCTCCATCAAACCATGGT
CGAGGCCCATTAATAGCTGTGTTTGTATGCAGGTGTTTGAACGGTAGGAA
AGGCGTATGAGGGTCAGGGTTGCCTCTAGCAAAACCGAAATCCAAGGTTA
GAATACAAGGTATCATTATTGATAATATCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036375-exon-sc0001451-1491911889:56407..59243 | TCONS_00036375-exon-sc0001451-1491911889:56407..59243 | Clytia hemisphaerica | exon |
| TCONS_00036375-exon-sc0001451-1510915933:56407..59243 | TCONS_00036375-exon-sc0001451-1510915933:56407..59243 | Clytia hemisphaerica | exon |
| TCONS_00036375-exon-sc0001451-1575043694:56407..59243 | TCONS_00036375-exon-sc0001451-1575043694:56407..59243 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001451 | supercontig | sc0001451:56407..59243 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00036375 vs. Swiss-Prot (Human)
Match: MFAP4 (Microfibril-associated glycoprotein 4 OS=Homo sapiens GN=MFAP4 PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 3.655e-35 Identity = 88/224 (39.29%), Postives = 111/224 (49.55%), Query Frame = 2
Query: 1088 VHQNIDCADWMKLEYHQSGVYFIYYNREKFKV--WCEMIPGKAK-IIIQKRFDGSVDFYQNWEKYKNGFGDIGGEHWLGLENIHKLTKGRNMEIALQANSFQDETQYAVYKNFYI-----EGEDLFYQLNAGVFVEGTPYHHDWTVSADGMKFSTFDSDQDLADLINCAVTYPSGWWNERCFNINFNGVYQHSETLTSRARGIIWQAWKGYKKGLKSTSMAIRR 1735
+ Q +DC D Y GVY IY + V +C+M K + QKRF+GSV F++ W YK GFG GE+WLGL+N+H LT + E+ + F++ T YA Y +F I E+ Y L F +G D G KFSTFD DQDL + NCA +W C N NG Y L S A GI W WKG+ LK T M IRR
Sbjct: 35 LQQPLDCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNMHLLTLKQKYELRVDLEDFENNTAYAKYADFSISPNAVSAEEDGYTLFVAGFEDGGA--GDSLSYHSGQKFSTFDRDQDLF-VQNCAALSSGAFWFRSCHFANLNGFYLGGSHL-SYANGINWAQWKGFYYSLKRTEMKIRR 254
The following BLAST results are available for this feature:
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