TCONS_00036369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036369
Unique NameTCONS_00036369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036369 ID=TCONS_00036369|Name=TCONS_00036369|organism=Clytia hemisphaerica|type=transcript|length=299bp
NGAAATCTTTCCTCGTTGCTATCTTCTTCGCATGGGGAAGACCAATGTTT
CCAATCGATCTTTCCGTAGTTAAAGTCTCCTACAAGACATAGGCGAGTGT
ATTTTGGGTTTAAGCAGAGATCTTTTATGAGCTTGTTCATGTTCTTGTTA
TTTTCATCGTAGTCGTTTGTTTCGGTTTTGGTTGGGCTTCTATAAAAGCA
GCCAAATAACATTGTGTCTTTGTTCTGCATTGCTATTTCTATCAGACAGA
CCTCTTCAAGTCgaatttttgtttctatttgTAGGATGAGGTGTTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00036369-protein

>TCONS_00036369-protein ID=TCONS_00036369-protein|Name=TCONS_00036369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
IEHLILQIETKIRLEEVCLIEIAMQNKDTMLFGCFYRSPTKTETNDYDEN
NKNMNKLIKDLCLNPKYTRLCLVGDFNYGKIDWKHWSSPCEEDSNEERF
Run BLAST on NCBI

transcript from alignment at sc0001449:29095..29393

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036369 ID=TCONS_00036369|Name=TCONS_00036369|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at sc0001449:29095..29393 (Clytia hemisphaerica)
ATTGAACACCTCATCCTAcaaatagaaacaaaaattcGACTTGAAGAGGT
CTGTCTGATAGAAATAGCAATGCAGAACAAAGACACAATGTTATTTGGCT
GCTTTTATAGAAGCCCAACCAAAACCGAAACAAACGACTACGATGAAAAT
AACAAGAACATGAACAAGCTCATAAAAGATCTCTGCTTAAACCCAAAATA
CACTCGCCTATGTCTTGTAGGAGACTTTAACTACGGAAAGATCGATTGGA
AACATTGGTCTTCCCCATGCGAAGAAGATAGCAACGAGGAAAGATTTCN

Coding sequence (CDS) from alignment at sc0001449:29095..29393

>TCONS_00036369 ID=TCONS_00036369|Name=TCONS_00036369|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at sc0001449:29095..29393 (Clytia hemisphaerica)
ATTGAACACCTCATCCTAcaaatagaaacaaaaattcGACTTGAAGAGGT
CTGTCTGATAGAAATAGCAATGCAGAACAAAGACACAATGTTATTTGGCT
GCTTTTATAGAAGCCCAACCAAAACCGAAACAAACGACTACGATGAAAAT
AACAAGAACATGAACAAGCTCATAAAAGATCTCTGCTTAAACCCAAAATA
CACTCGCCTATGTCTTGTAGGAGACTTTAACTACGGAAAGATCGATTGGA
AACATTGGTCTTCCCCATGCGAAGAAGATAGCAACGAGGAAAGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021413XLOC_021413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036369-exon-sc0001449-1491911889:29095..29393TCONS_00036369-exon-sc0001449-1491911889:29095..29393Clytia hemisphaericaexon
TCONS_00036369-exon-sc0001449-1510915933:29095..29393TCONS_00036369-exon-sc0001449-1510915933:29095..29393Clytia hemisphaericaexon
TCONS_00036369-exon-sc0001449-1575043694:29095..29393TCONS_00036369-exon-sc0001449-1575043694:29095..29393Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036369-proteinTCONS_00036369-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001449supercontigsc0001449:29095..29393 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37833	1.36076	2.96959	2.53697	1.92156	0.628079	2.02406	4.73726	5.61172	2.87576	21.4805	1.0485	3.2935	3.2621	0.670472	2.63824	0.590926	2.42272	1.25517	4.37815	1.79555	2.78422	0	0.647798	2.53545	1.13141	1.5217	2.30386	0.436849	1.98948
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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