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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036348 ID=TCONS_00036348|Name=TCONS_00036348|organism=Clytia hemisphaerica|type=transcript|length=1029bp
GTGGTAGCATTCCTACTAAAATCATAAAGTTAGCCAAATTTGTTTGTGCT
CCAACTTTGACATCATGCTTCAATAACTTTCTTCAATCTCAAAACTCTCC
TGACAGCTTGAAGCTTGCTGATATAATTCCAGTCCATAAGAAAAACAGCA
AACATGACAAGGATAATTACAGGCCCGTCAGTCTCCTNATGCTTCAATAA
CTCTCTTCAATCTCAAAACTTTCCTGACAGCTTGAAGCTTGCTGATATAA
TTCCAGTCCATAAGAAAAACAGCAAACATGACAAGGATGATTACAGACCC
GTCAGTCTCCTCCCATCTCTgtctaaaatctttgaaaaacttatttcaaa
tcAACTCAACACCTTCTTTGAATCATTTTTCTCTAACGGACTCTGTGGTT
TTCGTAAACAGTATAGCACGCAAAGTGCTTTACTAAATATGTTACGAAAA
TGGCAGAATTCATTGTCCAAATCAAAAAAGATTGGAGCAATTCTGATGGA
TCTGTCTAAAGCCTTTGACTGTTTGCCTCATGATCTTCTGATTGCAAAAC
TTTATGCATATGGATTGGATTGTATTAGCCTAGCTTTTAtgcaaagttat
ttaaaaaacagaaAGCATAGGGTCAGAGTTGGTTCATCGTTCAGTAATTG
GCTACCTTTGCTATTTGGTGTGCCTCAGGGATCTATTTTAGGACCTattc
ttttcaatgtttttatcaatgatttgtttttctttgttaatgAAGACGAC
CTCTGTAACTTCGCTGATGACGATACTCTGCACAAAAGTGCTTCCTCTCT
AGATGAGGCCCTCGAAGCTTTAATTCTAGACCTAGAAATCATTCTAGCTT
GGTTTAGACACAACTCCCTTGTTGCAAATCCAGAGAAGTTTCAGGTATTG
TTTCCAGGCACAAAGAATGCCAATATAGTTTTCAATGTTGGAAATATTAC
ATTAGAGTCTTCCGAGAGCGTGAAACTGCTTGGAGTAACTATCGACAGTG
GCCTCACTTTTTATAATCACGTACAGGNN Run BLAST on NCBI protein sequence of TCONS_00036348-protein >TCONS_00036348-protein ID=TCONS_00036348-protein|Name=TCONS_00036348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MTRIITGPSVSXCFNNSLQSQNFPDSLKLADIIPVHKKNSKHDKDDYRPV
SLLPSLSKIFEKLISNQLNTFFESFFSNGLCGFRKQYSTQSALLNMLRKW
QNSLSKSKKIGAILMDLSKAFDCLPHDLLIAKLYAYGLDCISLAFMQSYL
KNRKHRVRVGSSFSNWLPLLFGVPQGSILGPILFNVFINDLFFFVNEDDL
CNFADDDTLHKSASSLDEALEALILDLEIILAWFRHNSLVANPEKFQVLF
PGTKNANIVFNVGNITLESSESVKLLGVTIDSGLTFYNHVQX Run BLAST on NCBI transcript from alignment at sc0001447:33665..34693 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036348 ID=TCONS_00036348|Name=TCONS_00036348|organism=Clytia hemisphaerica|type=transcript|length=1029bp|location=Sequence derived from alignment at sc0001447:33665..34693 (Clytia hemisphaerica)
NNCCTGTACGTGATTATAAAAAGTGAGGCCACTGTCGATAGTTACTCCAA
GCAGTTTCACGCTCTCGGAAGACTCTAATGTAATATTTCCAACATTGAAA
ACTATATTGGCATTCTTTGTGCCTGGAAACAATACCTGAAACTTCTCTGG
ATTTGCAACAAGGGAGTTGTGTCTAAACCAAGCTAGAATGATTTCTAGGT
CTAGAATTAAAGCTTCGAGGGCCTCATCTAGAGAGGAAGCACTTTTGTGC
AGAGTATCGTCATCAGCGAAGTTACAGAGGTCGTCTTcattaacaaagaa
aaacaaatcattgataaaaacattgaaaagaatAGGTCCTAAAATAGATC
CCTGAGGCACACCAAATAGCAAAGGTAGCCAATTACTGAACGATGAACCA
ACTCTGACCCTATGCTttctgttttttaaataactttgcaTAAAAGCTAG
GCTAATACAATCCAATCCATATGCATAAAGTTTTGCAATCAGAAGATCAT
GAGGCAAACAGTCAAAGGCTTTAGACAGATCCATCAGAATTGCTCCAATC
TTTTTTGATTTGGACAATGAATTCTGCCATTTTCGTAACATATTTAGTAA
AGCACTTTGCGTGCTATACTGTTTACGAAAACCACAGAGTCCGTTAGAGA
AAAATGATTCAAAGAAGGTGTTGAGTTgatttgaaataagtttttcaaag
attttagacAGAGATGGGAGGAGACTGACGGGTCTGTAATCATCCTTGTC
ATGTTTGCTGTTTTTCTTATGGACTGGAATTATATCAGCAAGCTTCAAGC
TGTCAGGAAAGTTTTGAGATTGAAGAGAGTTATTGAAGCATNAGGAGACT
GACGGGCCTGTAATTATCCTTGTCATGTTTGCTGTTTTTCTTATGGACTG
GAATTATATCAGCAAGCTTCAAGCTGTCAGGAGAGTTTTGAGATTGAAGA
AAGTTATTGAAGCATGATGTCAAAGTTGGAGCACAAACAAATTTGGCTAA
CTTTATGATTTTAGTAGGAATGCTACCAC Coding sequence (CDS) from alignment at sc0001447:33665..34693 >TCONS_00036348 ID=TCONS_00036348|Name=TCONS_00036348|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at sc0001447:33665..34693 (Clytia hemisphaerica)
NNCCTGTACGTGATTATAAAAAGTGAGGCCACTGTCGATAGTTACTCCAA
GCAGTTTCACGCTCTCGGAAGACTCTAATGTAATATTTCCAACATTGAAA
ACTATATTGGCATTCTTTGTGCCTGGAAACAATACCTGAAACTTCTCTGG
ATTTGCAACAAGGGAGTTGTGTCTAAACCAAGCTAGAATGATTTCTAGGT
CTAGAATTAAAGCTTCGAGGGCCTCATCTAGAGAGGAAGCACTTTTGTGC
AGAGTATCGTCATCAGCGAAGTTACAGAGGTCGTCTTcattaacaaagaa
aaacaaatcattgataaaaacattgaaaagaatAGGTCCTAAAATAGATC
CCTGAGGCACACCAAATAGCAAAGGTAGCCAATTACTGAACGATGAACCA
ACTCTGACCCTATGCTttctgttttttaaataactttgcaTAAAAGCTAG
GCTAATACAATCCAATCCATATGCATAAAGTTTTGCAATCAGAAGATCAT
GAGGCAAACAGTCAAAGGCTTTAGACAGATCCATCAGAATTGCTCCAATC
TTTTTTGATTTGGACAATGAATTCTGCCATTTTCGTAACATATTTAGTAA
AGCACTTTGCGTGCTATACTGTTTACGAAAACCACAGAGTCCGTTAGAGA
AAAATGATTCAAAGAAGGTGTTGAGTTgatttgaaataagtttttcaaag
attttagacAGAGATGGGAGGAGACTGACGGGTCTGTAATCATCCTTGTC
ATGTTTGCTGTTTTTCTTATGGACTGGAATTATATCAGCAAGCTTCAAGC
TGTCAGGAAAGTTTTGAGATTGAAGAGAGTTATTGAAGCATNAGGAGACT
GACGGGCCTGTAATTATCCTTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036348-exon-sc0001447-1491911889:33665..34693 | TCONS_00036348-exon-sc0001447-1491911889:33665..34693 | Clytia hemisphaerica | exon |
| TCONS_00036348-exon-sc0001447-1510915933:33665..34693 | TCONS_00036348-exon-sc0001447-1510915933:33665..34693 | Clytia hemisphaerica | exon |
| TCONS_00036348-exon-sc0001447-1575043694:33665..34693 | TCONS_00036348-exon-sc0001447-1575043694:33665..34693 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001447 | supercontig | sc0001447:33665..34693 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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