TCONS_00036320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036320
Unique NameTCONS_00036320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036320 ID=TCONS_00036320|Name=TCONS_00036320|organism=Clytia hemisphaerica|type=transcript|length=473bp
TGATCAATGATGAACATAAGATGCGTAAGATCATCAAATCGACAGTACGA
GATGTAGTTGAAAGACTTGTTTCAAATGAACATAAACAACACCGAATTAT
CAATACACCTGCCACTCCAACAAATATGAGATGTTACGAAAATGCTGTCA
CCAAGTTTAGAACCAActgtttcaatttcaacaagtatgAACATGCATTA
CGTCACGTGTACGTTTTATCCAACCTTTGCGATGAAGGCTTACACATGAT
TGAGGTTGAGAGAGCTATCGAGAAATCCTGTTTCGCTTTACACCAACAGT
ACACTCACTAAATCTTAAAGCAAAGGTCAAAGATGGTGGGTTGGCTGGAT
TTTATGTCTCCCTAACCATTAAAGTATTTTTATATGCAGTattcaatcaa
tgtttttaaaTCTATCAAGTCACACACCAGTGACAGTATTAAATAATATG
GTGCTTAGTTACGTTGAAGGGAA
Run BLAST on NCBI

protein sequence of TCONS_00036320-protein

>TCONS_00036320-protein ID=TCONS_00036320-protein|Name=TCONS_00036320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
INDEHKMRKIIKSTVRDVVERLVSNEHKQHRIINTPATPTNMRCYENAVT
KFRTNCFNFNKYEHALRHVYVLSNLCDEGLHMIEVERAIEKSCFALHQQY
TH
Run BLAST on NCBI

transcript from alignment at sc0001442:58237..60297-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036320 ID=TCONS_00036320|Name=TCONS_00036320|organism=Clytia hemisphaerica|type=transcript|length=2061bp|location=Sequence derived from alignment at sc0001442:58237..60297- (Clytia hemisphaerica)
TGATCAATGATGAACATAAGGTGTAAAATGAGGTCGTTTCAACGTTCATC
TATGAACGTTAAACAGACGTTTAAAAACCACGTTGTAAAGGTAAGGTAAT
AGCATACCGTAGCGAATCTAAAAATTGACATTAATTTTTCTGTTTGACCG
AAATTCAATCCCGTCACCCCTTTGCGTTTATTACGCTAGCACGCAAATTA
CACTCAATTACAAAGAAAAAGTAATAACTTTCACGACTTTTGAATTTAGA
CAAAAAGGATTGTGGAATTGAATTTCGGTCAAATGAGAGACGTATTAATC
ATGATGTTTGCATAACGAAGCGCTATTAAACTGATGTCGCTTCAACGTTC
ACCTATGAACTTTAAACGGACGTTTAAAACTACGTTGTACTGTAAAGATA
ATTAAACTGATGTTGTTTCAACGTTCATCTCTTAACCAAATCTGTACTTC
ATGCAGTTATTATGAGACACTAACTATGGATGATGGTCGTGTTTCGAAAT
TTGCCAATATCAGTTAAAAAATTACTTATTGGCCAAGATTTCAAAAATTT
GGAACAATCTTTTTGAGGAAGAGGCTTGCGTGGTGTTTGAAACCCTGATA
TTTTAACTGGAGCTCGTTTCCCCTCATTGATACATATCCGAAAATAAAAA
AAACCGTATAATTATAAAAATGTTAGTCCCTTTTTGTGTTTCATTTTTAT
TTTATTTAGTATTTTCAACACTTCCTCTCTTTGAGGTCAGATCTCTGATC
TTCACCATATATCTTTCATTTTTACAATCTAGATGCGTAAGATCATCAAA
TCGACAGTACGAGATGTAGTTGAAAGACTTGTTTCAAATGAACATAAACA
ACACCGAATTATCAATACACCTGCCACTCCAACAAATATGAGATGTTACG
AAAATGCTGTCACCAAGTTTAGAACCAACTGTTTCAATTTCAACAAGGTA
TCAGTTATAAGTACTCATAGGGGGTAGATCAAATCATGGGACTGATGGAT
CAACGAGCAAGGAAAAAAAAGGTTTTGGGCTGAAAATGATATTTTCCCTT
AAAATCCGTATTACCTTAAGTGAACTAATTTTTTTTAACAAATTTTCGCG
GGATCTAATTTTCGCTTTTTGGGTGTATACTGCGAAAATTAATTCTGCGA
AATGCAATTTTCATACTTTTGCACCGCGAAAATAAGTTCCACGAAAATTA
GTTATCGCGAAAATTAGTTATCGCGAAAATTATTATAAAATAAATTTTGC
TTTTTATTTTTAGTATGAACATGCATTACGTCACGTGTACGTTTTATCCA
ACCTTTGCGATGAAGGCTTACACATGATTGAGTAAGTTTCCTTTAATATT
GAATATTTTTTTAATTGGAGTATGTGCCTCTAAGAATTTTTTTTTCTCCA
AATTTCCTTGATCGCCTGAAAATATTTAGAGGGTTTCTGATGGTACACGT
TTTTTTTTATTAAAACCCAGTTTATAAGAACATTGAGGCTGAAATTCGTC
GAAAAGTTAAGAGCATCGTAAGAACGTGCCCAGCCTCAGTTTGGAAAAAA
ATGACAAGAAACTACAATTTTTTCCTCTTTTCAAGCAGTTTTAACCAAAC
TTAGGCATGGATTTTCTAAAATCGAGAGTCAAATATTGTCCAAATTGTAC
CAATTTTATATGCTCTTTATTTTGCATGATATTGTCGATTTAGAGTAGTC
TGAAAAATTAAGAACGCATTTAAAAACATTTAAGGCTGAAAATTGCTAAA
AAAAATAAGCACATCCAGGCTCAGCCAAATTTTAGGTGTTCTAATAAAAA
AAAACGTGTATGTAATAATTTTTTATTTTTTCACAATACAGGGTTGAGAG
AGCTATCGAGAAATCCTGTTTCGCTTTACACCAACAGTACACTCACTAAA
TCTTAAAGCAAAGGTCAAAGATGGTGGGTTGGCTGGATTTTATGTCTCCC
TAACCATTAAAGTATTTTTATATGCAGTATTCAATCAATGTTTTTAAATC
TATCAAGTCACACACCAGTGACAGTATTAAATAATATGGTGCTTAGTTAC
GTTGAAGGGAA

Coding sequence (CDS) from alignment at sc0001442:58237..60297-

>TCONS_00036320 ID=TCONS_00036320|Name=TCONS_00036320|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0001442:58237..60297- (Clytia hemisphaerica)
GGTTGAGAGAGCTATCGAGAAATCCTGTTTCGCTTTACACCAACAGTACA
CTCACTAATATGAACATGCATTACGTCACGTGTACGTTTTATCCAACCTT
TGCGATGAAGGCTTACACATGATTGAATGCGTAAGATCATCAAATCGACA
GTACGAGATGTAGTTGAAAGACTTGTTTCAAATGAACATAAACAACACCG
AATTATCAATACACCTGCCACTCCAACAAATATGAGATGTTACGAAAATG
CTGTCACCAAGTTTAGAACCAACTGTTTCAATTTCAACAAGATCAATGAT
GAACATAAGGGTTGAGAGAGCTATCGAGAAATCCTGTTTCGCTTTACACC
AACAGTACACTCACTAATATGAACATGCATTACGTCACGTGTACGTTTTA
TCCAACCTTTGCGATGAAGGCTTACACATGATTGAATGCGTAAGATCATC
AAATCGACAGTACGAGATGTAGTTGAAAGACTTGTTTCAAATGAACATAA
ACAACACCGAATTATCAATACACCTGCCACTCCAACAAATATGAGATGTT
ACGAAAATGCTGTCACCAAGTTTAGAACCAACTGTTTCAATTTCAACAAG
ATCAATGATGAACATAAGGGTTGAGAGAGCTATCGAGAAATCCTGTTTCG
CTTTACACCAACAGTACACTCACTAATATGAACATGCATTACGTCACGTG
TACGTTTTATCCAACCTTTGCGATGAAGGCTTACACATGATTGAATGCGT
AAGATCATCAAATCGACAGTACGAGATGTAGTTGAAAGACTTGTTTCAAA
TGAACATAAACAACACCGAATTATCAATACACCTGCCACTCCAACAAATA
TGAGATGTTACGAAAATGCTGTCACCAAGTTTAGAACCAACTGTTTCAAT
TTCAACAAGATCAATGATGAACATAAGGGTTGAGAGAGCTATCGAGAAAT
CCTGTTTCGCTTTACACCAACAGTACACTCACTAATATGAACATGCATTA
CGTCACGTGTACGTTTTATCCAACCTTTGCGATGAAGGCTTACACATGAT
TGAATGCGTAAGATCATCAAATCGACAGTACGAGATGTAGTTGAAAGACT
TGTTTCAAATGAACATAAACAACACCGAATTATCAATACACCTGCCACTC
CAACAAATATGAGATGTTACGAAAATGCTGTCACCAAGTTTAGAACCAAC
TGTTTCAATTTCAACAAGATCAATGATGAACATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021377XLOC_021377Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036320-exon-sc0001442-1575043694:60278..60297TCONS_00036320-exon-sc0001442-1575043694:60278..60297Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1575043694:59351..59515TCONS_00036320-exon-sc0001442-1575043694:59351..59515Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1575043694:58967..59034TCONS_00036320-exon-sc0001442-1575043694:58967..59034Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1575043694:58237..58456TCONS_00036320-exon-sc0001442-1575043694:58237..58456Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1510915933:60278..60297TCONS_00036320-exon-sc0001442-1510915933:60278..60297Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1510915933:59351..59515TCONS_00036320-exon-sc0001442-1510915933:59351..59515Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1510915933:58967..59034TCONS_00036320-exon-sc0001442-1510915933:58967..59034Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1510915933:58237..58456TCONS_00036320-exon-sc0001442-1510915933:58237..58456Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1491911889:60278..60297TCONS_00036320-exon-sc0001442-1491911889:60278..60297Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1491911889:59351..59515TCONS_00036320-exon-sc0001442-1491911889:59351..59515Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1491911889:58967..59034TCONS_00036320-exon-sc0001442-1491911889:58967..59034Clytia hemisphaericaexon
TCONS_00036320-exon-sc0001442-1491911889:58237..58456TCONS_00036320-exon-sc0001442-1491911889:58237..58456Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036320-proteinTCONS_00036320-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001442supercontigsc0001442:58237..60297 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5502	11.1465	18.9131	15.8359	24.1933	16.7436	30.684	33.0743	68.5725	68.9037	80.2035	34.6761	43.8513	37.8346	183.266	214.572	119.534	109.317	62.9936	106.363	43.1531	42.0094	127.871	155.998	183.803	200.306	99.0877	95.9726	802.207	600.94
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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