TCONS_00036317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036317
Unique NameTCONS_00036317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036317 ID=TCONS_00036317|Name=TCONS_00036317|organism=Clytia hemisphaerica|type=transcript|length=2777bp
GTCCAAATCCACTTATAAATTATATGTGATCTGAAAATAAGATACTaacc
cagacggcacacaacgtcaaaacaatgcccatgtgacattcataacgtcc
aaataacgttatctgaacgttaaaacaacgtagtgtgccagctgggagtc
GTAAAAATAATTAGCAAAGTACGGAAGCATATAAATTTCGATACTCTACT
TTCAATTCGTAAGTTTTCTCTTGGATCTTCTAGATTTCAGAGAGAAAAAT
GGCAACTTTTCATCAAGCAGTTGTGCTTCTGCTGGTAGCAGTAATATCAG
TCCAATGCAAGATTTATTTGGTCCACAAATCCTCTAAGACTGGCAAATGT
GGCTACAATGGTTATGTTCCAGGAGGTCATGGACCATCTATCAAGCGAAT
CACATCCCCAGAAGCGAAGTTACAAGAAGAGCAAATGTCAATGCTTGCTT
TCAAAGATCCTACCGTAAATAAAGTCAAGAGTGTATCCAGGAAATATTAT
GACCAGTTGGTCACAGTTTTTGGTGATGTGTGTCCACAAATTGGAATCGG
TCTCGGTGTTTTTGGTCTTGCAACCATGATTGAAGGAGATATTTCAGGTT
CAGCACCACCTACTCATGCTGATGTCATCAAATCTGTCAATACAGCATTT
GAAAAGTTAACTAAAGATGTTAATGCCCGTTTTGATCGTATGCAACATTA
CGTTAATCATCAAATCATGAAATCTGAACGAGATTTAGTGAATGTCAAAC
TGAGGTCCATTTTCAAATCTTGGGAAGATTGCATTGATGAGAAAACAAAG
AATGGAGCGATCATGTGTCAAAAAAATGCTGTCCGAAAAATGAGAGgtGA
AAGACCATTCTTTTACCCTGGTTTCGATAAGAGAAAAACTTGGTCTCTAA
GCAACCGACCACctgttgatgacgtcatcaaaatggaagccaattttatt
ttatttcgtgATTATGCTTTGATTAATATCATGATGGTTCAAACTTTGGT
CAATATTTATCGAGAAGACAAGAAATTGCCGAATGCAAACATTTTGAGAG
ATCAATATATCAATCAGctAAGCGAAGATGCAAATGATGCAATCGAATAC
GcagaatttgtttttaaatggcTTAAAGATTTGTATGATGAACGAAGCAA
AAATTATTGTAAAGACAGTTTAACATGCAAACGAAAACAAGAGGGTGATA
TTTTAAGAGGTGATTGTGCATGTATTTTTGCGGCTAATTTAAAAGAAGAA
TGTCACACgcaaattcaaatcaaaacaaaaggtgGACAAGTGGCACCATT
TGCAAGGAAAGACATACCAGATTGGGTCAAATCGAATGACAAAGCGATGA
CTTACGTTGCTGAGATGTTTCTTAACGACGGATCCGCCTACCATGATAAT
TACAAtgcaaaattatatcgagttttATTGCGAAGAGATATGGAAAAGTA
TTGGCAAAACGAAATCTTGGATTTGATTCCAACATGGAGAAACATTGCGA
ATAAAGGGAAACAAAAGACTGGTATTAGCACAACATCGACTTCTGGAGGA
AGTGTGAATGTGAATGTTGGATCTGCAGTTCGAGGAGCTCTTAGCAGGTT
TGGTAGACGAGATATGATCCCCAATTACTGATCAGTGAAGCTAAGGATAC
AAGAAGCCGAAAATTTaatgatttcattgaaaaattctAATTGAAATGAT
AACATTGAAATTTACGATAACATTTTACGTAATAATAAGTAACTATAATT
AAAAGATGAATGTCATGGTCAATTGGCTCCTGCTTATTGCTCCAAACATA
CTTCTAAGGGGGCTTTCTAGTCCATCGTTTATAATCTGTTTTATAAGATA
CTAAAATATCTTCTtagttctttctttcttttgaaattagctCTAACTTT
GTAACCTGTTTTATTTTTGACCCATCTTCTTTTAGTTGAAATAAAGTAAA
TTTGTGCTTTAAAAAAGTATTGTTTTTGCTTCGAAAGTTATATCCATTAA
AGACTTCAGTCAGAGAGATGATAAGATAATTATTGGCCTTGACTCTCCAA
TCACTCGCTGTGAAAATTCAAGGGACATAAAAATACTGACGaactttgta
aacaaaccgtatgcagcgggatacaaaatcaaaacaaatgtcacatgtca
aaataaaaattaaaaacaaatgtggctgattttgattgtgtcaattattt
tacaattttgttttggacacgtgattttaattgttctctttaatgacacg
tggtttgcgcaatgtttacattttactacttttatgtccctttaagagaA
TAACAGAAGGGCGTGCATATTTTGATATTGGAAAATCTTGaagagaataa
aaaaaatcttgaaaatgcttataataaaaaaatatttttgatgtacTATA
GAAAGGCTAAATTTCCGATCACCATTGTAAAACAAGAGACCTAAAGTAAG
TAGGAGACGCTGTCTTCAATGTCTTCAATGCGAAAGTTTGACCATTTTAG
GTACAATACCCAGGCCAATTgtgtttcaaataaaagaaagaagaattGTT
TTTTCTCACGAGGAACCAAAAAGATGCCTTCTATGGTGCTTAAGTAAGTA
AAAGAAAGATTAAAAAACAACTACCataattaaaaataagttatttaaaa
acaattaaCAATTTAATAAAAAGACTAATAATATTTGCCTAGCACTAATT
TGTAGTTATTAACTTTGTAGGGGAAACCTTCTTAAGTAAAAAGCGTCgaa
atttcaaggaaaatgacaaaattttcc
Run BLAST on NCBI

transcript from alignment at sc0001442:52785..58183+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036317 ID=TCONS_00036317|Name=TCONS_00036317|organism=Clytia hemisphaerica|type=transcript|length=5399bp|location=Sequence derived from alignment at sc0001442:52785..58183+ (Clytia hemisphaerica)
GTCCAAATCCACTTATAAATTATATGTGATCTGAAAATAAGATACTaacc
cagacggcacacaacgtcaaaacaatgcccatgtgacattcataacgtcc
aaataacgttatctgaacgttaaaacaacgtagtgtgccagctgggagtc
GTAAAAATAATTAGCAAAGTACGGAAGCATATAAATTTCGATACTCTACT
TTCAATTCGTAAGTTTTCTCTTGGATCTTCTAGATTTCAGAGAGAAAAAT
GGCAACTTTTCATCAAGCAGTTGTGCTTCTGCTGGTAGCAGTAATATCAG
TCCAATGCAAGATTTATTTGGTCCACAAATCCTCTAAGACTGGCAAATGT
GGCTACAATGGTTATGTTCCAGGAGGTCATGGACCATCTATCAAGCGAAT
CACATCCCCAGAAGCGAAGTTACAAGAAGAGCAAATGTCAATGCTTGCTT
TCAAAGATCCTACCGTAAATAAAGTCAAGAGTGTATCCAGGAAATATTAT
GACCAGTTGGTCACAGTTTTTGGTGATGTGTGTCCACAAATTGGAATCGG
TCTCGGTGTTTTTGGTCTTGCAACCATGATTGAAGGAGATATTTCAGGTT
CAGCACCACCTACTCATGCTGATGTCATCAAATCTGTCAATACAGCATTT
GAAAAGTTAACTAAAGATGTTAATGCCCGTTTTGATCGTATGCAACATTA
CGTTAATCATCAAATCATGAAATCTGAACGAGATTTAGTGAATGTCAAAC
TGAGGTCCATTTTCAAATCTTGGGAAGATTGCATTGATGAGAAAACAAAG
AATGGAGCGATCATGTGTCAAAAAAATGCTGTCCGAAAAATGAGAGGTAT
GTTTCATTTAATactttcaagaaaattttcattatctAAATTACGTTGGC
CCTGAGATGTCACTGTTTCGTCACAAAATTTCAGTGTTTTATCACAACTT
TCCAGGACACTTTTCAGTGTTTCATCACGGAATGTTTGTGATAAAACACT
GAAATTTTGTGACGAAACAGTGACATCTCAGGGCCATCGTACTAAATTCA
TTTCTCAGCAAGTTCCTTCACTCGTTCTTTGATATGGATCAGAGAGAATT
TATaagacatccctgtctcacagccccggtgaaactttttcctacagcgg
ggataaaaattgtgATTGAAATCttaatggggataaaaattttattgttc
caaggtaaaaaaatccagtggggatggttttggagtgcaatttttaaaca
ttgaatttcgaatggggacgaaatcaaagtcaatttctcattggggctga
aattctagggtatttttcccactgggacaaaatttttgcaaaaattttca
gtggggctggggccccagtgggtctgtgacacagaggtGTTATAAGTATG
AGGGTGCCTATCGCCTTTTGAAAACGGTGGTTAGCTCCGGGGCAGAGTAA
GCACTGACGGAGGTGTTTAAAGTGTAACcgtttgttccaaactctaccgc
cacagACAGCTTGTATAGTTTTTGTATCGAAATGACATAATATGTTCGCA
AGCCAAGCTGTCAAAGGAGGGCGTTATTAACTGCCAATAccacaatttca
tttcataggtGAAAGACCATTCTTTTACCCTGGTTTCGATAAGAGAAAAA
CTTGGTCTCTAAGCAACCGACCACctgttgatgacgtcatcaaaatggaa
gccaattttattttatttcgtgATTATGCTTTGATTAATATCATGATGGT
TCAAACTTTGGTCAATATTTATCGAGAAGACAAGAAATTGCCGAATGCAA
ACATTTTGAGAGATCAATATATCAATCAGGTAAAGTTTTATAcaatgttc
aatttttttataaaaacatccaacatttttaaagctttaatgtgttcttt
actttttgagttttaaatgttctttaaattaatttccattttttgtgtgt
gtttttgtgcaattttctgAGAATTGGGAGTTTAGAGTCAATAAAGgcat
tcaaattttcttaactttatctttatatatgttcttatatagtttgttct
tataaaaaaatatgtattctcaaattttcattaTGCAAATCTTACCAGTA
TGAATCTTTCATGGTTGTTTATTTTCACCCGGTATAATAGAGATCTATGA
acacacgttttttcataagaacatccaaaaaattttaaatctttagatat
tcttaacttttttagttttaagcctaaaaatgttcttaacatgttcttat
tttcaccattatttgagcatttttgtccattttcctaagaaattgggtac
tttagagtccccaaagccttaaaatgttcttaacttgttcttaacatttt
tgccatcgaaatcttatgttcttatatggtttgttcttataaaaaaacgt
gtattacattttccccatttttttcttcttcagctAAGCGAAGATGCAAA
TGATGCAATCGAATACGcagaatttgtttttaaatggcTTAAAGATTTGT
ATGATGAACGAAGCAAAAATTATTGTAAAGACAGTTTAACATGCAAACGA
AAACAAGAGGGTGATATTTTAAGAGGTAATCTTACGTTCTTTGTGTAAAC
AGTATCCAAACTAAATTTTAGGAGGCTCATCTTTTAcatccctttctcac
agacccggcccaattttttcagccagtggggattgatattccataTTTTT
TGTGGCTGGGGATttcatttccattgttttcgagccaaaaaattcagttg
ggattgaaaaaaatagcacaatattttgcaatgaTGATTTGTTTATCTGG
TTATTTTCAacagggacaaaaattagagcaTAGTTTTCCACTTAGATACG
ATATTTTGGCAAACCTTTCCAATGGGAAGGGATTTCTGTGAGAAGGAAAA
TGAGATAAAACATTAATTTAGCAGGAAGAGATAAATTGATTGGAGGAAAG
ATGGAATTTCAAATTCCAATGGACGGGATTGGAGAGGGGGGTAAGTAATA
AGGTTAAGGATgagaatgaaaacaaaaccatCATTGGAAAGCTAGGTACT
TTTATTGAAAACCCTATAGCAGGGTAAATACGATAAGTCAATATCAGGTG
TTTTGGGGCAATAAGCAGGAGGaggaaattcttttttcacaCGTGGTCTC
AATAAGGTCAAATAATTAACCAAGCGGGGTGTTTAAATGGGCAGAAAGAA
ACGAAAGTTGACAAGGGCTGTTAACCAAATTACGCAATTAGTATAAAAAA
CTAATATTTAAATTGCTTTAAATTCATTTAGGTGATTGTGCATGTATTTT
TGCGGCTAATTTAAAAGAAGAATGTCACACgcaaattcaaatcaaaacaa
aaggtgGACAAGTGGCACCATTTGCAAGGAAAGACATACCAGATTGGGTC
AAATCGAATGACAAAGCGATGACTTACGTTGCTGAGATGTTTCTTAACGA
CGGATGTAAGTGATTGTGTACAATTCTTGCAGGCAGTTGGGGGGATATTG
CTCATATCACCGAGATTTTCCATTGCTAAAGCACTTATGCAAAatgagta
cacgttttttcttttgataagaacatccaaaatttgtgaagccttcggat
gttcttaattttttcagatttaatgagcctaaaaatgttcttaaacatgt
tcttatttttgccattttgtgggtatttttgtgCGTTTCCCTAAGAAATC
GGTTTTTcttagagtccccaaagccttaaaatgttcttaaaatgctctta
aaatttcgaccatcgaagtcttatgttcttatacagtttgttcttataaa
aaaacgtgtatataagATGATACATTTTTTACATCTCAATTATCTCTCCA
AGGTTTATTTAAACAAATGCACTCTCTCAAAAGGGTCTCAAAATAGGTCA
TGCAACATCTTTCTCACAAGGGTTGATTTCAAACCTTTGACGATTCTAGA
TTCTGCAGAGGGAACCCTTCGCTCATAAAATCGCTCTTGCTTTTCTTCAT
TCTAGCCGCCTACCATGATAATTACAAtgcaaaattatatcgagttttAT
TGCGAAGAGATATGGAAAAGTATTGGCAAAACGAAATCTTGGATTTGATT
CCAACATGGAGAAACATTGCGAATAAAGGGAAACAAAAGACTGGTATTAG
CACAACATCGACTTCTGGAGGAAGTGTGAATGTGAATGTTGGATCTGCAG
TTCGAGGAGCTCTTAGCAGGTTTGGTAGACGAGATATGATCCCCAATTAC
TGATCAGTGAAGCTAAGGATACAAGAAGCCGAAAATTTaatgatttcatt
gaaaaattctAATTGAAATGATAACATTGAAATTTACGATAACATTTTAC
GTAATAATAAGTAACTATAATTAAAAGATGAATGTCATGGTCAATTGGCT
CCTGCTTATTGCTCCAAACATACTTCTAAGGGGGCTTTCTAGTCCATCGT
TTATAATCTGTTTTATAAGATACTAAAATATCTTCTtagttctttctttc
ttttgaaattagctCTAACTTTGTAACCTGTTTTATTTTTGACCCATCTT
CTTTTAGTTGAAATAAAGTAAATTTGTGCTTTAAAAAAGTATTGTTTTTG
CTTCGAAAGTTATATCCATTAAAGACTTCAGTCAGAGAGATGATAAGATA
ATTATTGGCCTTGACTCTCCAATCACTCGCTGTGAAAATTCAAGGGACAT
AAAAATACTGACGaactttgtaaacaaaccgtatgcagcgggatacaaaa
tcaaaacaaatgtcacatgtcaaaataaaaattaaaaacaaatgtggctg
attttgattgtgtcaattattttacaattttgttttggacacgtgatttt
aattgttctctttaatgacacgtggtttgcgcaatgtttacattttacta
cttttatgtccctttaagagaATAACAGAAGGGCGTGCATATTTTGATAT
TGGAAAATCTTGaagagaataaaaaaaatcttgaaaatgcttataataaa
aaaatatttttgatgtacTATAGAAAGGCTAAATTTCCGATCACCATTGT
AAAACAAGAGACCTAAAGTAAGTAGGAGACGCTGTCTTCAATGTCTTCAA
TGCGAAAGTTTGACCATTTTAGGTACAATACCCAGGCCAATTgtgtttca
aataaaagaaagaagaattGTTTTTTCTCACGAGGAACCAAAAAGATGCC
TTCTATGGTGCTTAAGTAAGTAAAAGAAAGATTAAAAAACAACTACCata
attaaaaataagttatttaaaaacaattaaCAATTTAATAAAAAGACTAA
TAATATTTGCCTAGCACTAATTTGTAGTTATTAACTTTGTAGGGGAAACC
TTCTTAAGTAAAAAGCGTCgaaatttcaaggaaaatgacaaaattttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021374XLOC_021374Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036317-exon-sc0001442-1491911889:52785..53630TCONS_00036317-exon-sc0001442-1491911889:52785..53630Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1510915933:52785..53630TCONS_00036317-exon-sc0001442-1510915933:52785..53630Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1575043694:52785..53630TCONS_00036317-exon-sc0001442-1575043694:52785..53630Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1491911889:54393..54613TCONS_00036317-exon-sc0001442-1491911889:54393..54613Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1510915933:54393..54613TCONS_00036317-exon-sc0001442-1510915933:54393..54613Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1575043694:54393..54613TCONS_00036317-exon-sc0001442-1575043694:54393..54613Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1491911889:55218..55359TCONS_00036317-exon-sc0001442-1491911889:55218..55359Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1510915933:55218..55359TCONS_00036317-exon-sc0001442-1510915933:55218..55359Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1575043694:55218..55359TCONS_00036317-exon-sc0001442-1575043694:55218..55359Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1491911889:56066..56239TCONS_00036317-exon-sc0001442-1491911889:56066..56239Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1510915933:56066..56239TCONS_00036317-exon-sc0001442-1510915933:56066..56239Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1575043694:56066..56239TCONS_00036317-exon-sc0001442-1575043694:56066..56239Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1491911889:56790..58183TCONS_00036317-exon-sc0001442-1491911889:56790..58183Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1510915933:56790..58183TCONS_00036317-exon-sc0001442-1510915933:56790..58183Clytia hemisphaericaexon
TCONS_00036317-exon-sc0001442-1575043694:56790..58183TCONS_00036317-exon-sc0001442-1575043694:56790..58183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001442supercontigsc0001442:52785..58183 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69508	1.16118	0.955111	1.5578	1.33117	0.85754	5.02792	5.6676	40.936	11.713	16.9423	36.3861	7.13328	8.5788	35.2587	31.4395	4.06866	4.02604	9.3871	6.06299	1.14719	0.890162	4.1014	3.40357	3.07729	4.00669	2.85092	2.69699	19.8213	14.4075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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