TCONS_00036316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036316
Unique NameTCONS_00036316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2977

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036316 ID=TCONS_00036316|Name=TCONS_00036316|organism=Clytia hemisphaerica|type=transcript|length=2977bp
AtttgtattattttttcaatggtTTTGCAAGATTATTTTAGTCTTTGTTA
TTTAGAGCTCTTACTAGAAAGCCTTCATGATAAATAATGATCTTCtggca
ttgatatcatgaattatcatgattttttttccttttctttccttgacatt
tattgttttgttgtcctccaagcttttattttttgtttgtacttccATAA
CGATTCAAGCGTTCGGATTGGTTCAGAACGAAAACAATCGATCGGACGCA
GATATTTCAATAGAAAGAAAAGATTCTACAGCTTATTCTTCAATAGATGG
ATAGCacatttcttatcctctttttccaaaattggtATAAATACACTGAA
ATTTAACTGGATTAATCAATCCAGACTTCACTCTAGATTGCTGAAGAAGT
TGTTCTTTCACCAACTGAAAGTCCATTGATAAGATTTCAGAGAGAAAAAT
GGCAACTTTTCATCAAGCAGTTGTGCTTCTGCTGGTAGCAGTAATATCAG
TCCAATGCAAGATTTATTTGGTCCACAAATCCTCTAAGACTGGCAAATGT
GGCTACAATGGTTATGTTCCAGGAGGTCATGGACCATCTATCAAGCGAAT
CACATCCCCAGAAGCGAAGTTACAAGAAGAGCAAATGTCAATGCTTGCTT
TCAAAGATCCTACCGTAAATAAAGTCAAGAGTGTATCCAGGAAATATTAT
GACCAGTTGGTCACAGTTTTTGGTGATGTGTGTCCACAAATTGGAATCGG
TCTCGGTGTTTTTGGTCTTGCAACCATGATTGAAGGAGATATTTCAGGTT
CAGCACCACCTACTCATGCTGATGTCATCAAATCTGTCAATACAGCATTT
GAAAAGTTAACTAAAGATGTTAATGCCCGTTTTGATCGTATGCAACATTA
CGTTAATCATCAAATCATGAAATCTGAACGAGATTTAGTGAATGTCAAAC
TGAGGTCCATTTTCAAATCTTGGGAAGATTGCATTGATGAGAAAACAAAG
AATGGAGCGATCATGTGTCAAAAAAATGCTGTCCGAAAAATGAGAGgtGA
AAGACCATTCTTTTACCCTGGTTTCGATAAGAGAAAAACTTGGTCTCTAA
GCAACCGACCACctgttgatgacgtcatcaaaatggaagccaattttatt
ttatttcgtgATTATGCTTTGATTAATATCATGATGGTTCAAACTTTGGT
CAATATTTATCGAGAAGACAAGAAATTGCCGAATGCAAACATTTTGAGAG
ATCAATATATCAATCAGctAAGCGAAGATGCAAATGATGCAATCGAATAC
GcagaatttgtttttaaatggcTTAAAGATTTGTATGATGAACGAAGCAA
AAATTATTGTAAAGACAGTTTAACATGCAAACGAAAACAAGAGGGTGATA
TTTTAAGAGGTGATTGTGCATGTATTTTTGCGGCTAATTTAAAAGAAGAA
TGTCACACgcaaattcaaatcaaaacaaaaggtgGACAAGTGGCACCATT
TGCAAGGAAAGACATACCAGATTGGGTCAAATCGAATGACAAAGCGATGA
CTTACGTTGCTGAGATGTTTCTTAACGACGGATCCGCCTACCATGATAAT
TACAAtgcaaaattatatcgagttttATTGCGAAGAGATATGGAAAAGTA
TTGGCAAAACGAAATCTTGGATTTGATTCCAACATGGAGAAACATTGCGA
ATAAAGGGAAACAAAAGACTGGTATTAGCACAACATCGACTTCTGGAGGA
AGTGTGAATGTGAATGTTGGATCTGCAGTTCGAGGAGCTCTTAGCAGGTT
TGGTAGACGAGATATGATCCCCAATTACTGATCAGTGAAGCTAAGGATAC
AAGAAGCCGAAAATTTaatgatttcattgaaaaattctAATTGAAATGAT
AACATTGAAATTTACGATAACATTTTACGTAATAATAAGTAACTATAATT
AAAAGATGAATGTCATGGTCAATTGGCTCCTGCTTATTGCTCCAAACATA
CTTCTAAGGGGGCTTTCTAGTCCATCGTTTATAATCTGTTTTATAAGATA
CTAAAATATCTTCTtagttctttctttcttttgaaattagctCTAACTTT
GTAACCTGTTTTATTTTTGACCCATCTTCTTTTAGTTGAAATAAAGTAAA
TTTGTGCTTTAAAAAAGTATTGTTTTTGCTTCGAAAGTTATATCCATTAA
AGACTTCAGTCAGAGAGATGATAAGATAATTATTGGCCTTGACTCTCCAA
TCACTCGCTGTGAAAATTCAAGGGACATAAAAATACTGACGaactttgta
aacaaaccgtatgcagcgggatacaaaatcaaaacaaatgtcacatgtca
aaataaaaattaaaaacaaatgtggctgattttgattgtgtcaattattt
tacaattttgttttggacacgtgattttaattgttctctttaatgacacg
tggtttgcgcaatgtttacattttactacttttatgtccctttaagagaA
TAACAGAAGGGCGTGCATATTTTGATATTGGAAAATCTTGaagagaataa
aaaaaatcttgaaaatgcttataataaaaaaatatttttgatgtacTATA
GAAAGGCTAAATTTCCGATCACCATTGTAAAACAAGAGACCTAAAGTAAG
TAGGAGACGCTGTCTTCAATGTCTTCAATGCGAAAGTTTGACCATTTTAG
GTACAATACCCAGGCCAATTgtgtttcaaataaaagaaagaagaattGTT
TTTTCTCACGAGGAACCAAAAAGATGCCTTCTATGGTGCTTAAGTAAGTA
AAAGAAAGATTAAAAAACAACTACCataattaaaaataagttatttaaaa
acaattaaCAATTTAATAAAAAGACTAATAATATTTGCCTAGCACTAATT
TGTAGTTATTAACTTTGTAGGGGAAACCTTCTTAAGTAAAAAGCGTCgaa
atttcaaggaaaatgacaaaattttcc
Run BLAST on NCBI

protein sequence of TCONS_00036316-protein

>TCONS_00036316-protein ID=TCONS_00036316-protein|Name=TCONS_00036316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
MATFHQAVVLLLVAVISVQCKIYLVHKSSKTGKCGYNGYVPGGHGPSIKR
ITSPEAKLQEEQMSMLAFKDPTVNKVKSVSRKYYDQLVTVFGDVCPQIGI
GLGVFGLATMIEGDISGSAPPTHADVIKSVNTAFEKLTKDVNARFDRMQH
YVNHQIMKSERDLVNVKLRSIFKSWEDCIDEKTKNGAIMCQKNAVRKMRG
ERPFFYPGFDKRKTWSLSNRPPVDDVIKMEANFILFRDYALINIMMVQTL
VNIYREDKKLPNANILRDQYINQLSEDANDAIEYAEFVFKWLKDLYDERS
KNYCKDSLTCKRKQEGDILRGDCACIFAANLKEECHTQIQIKTKGGQVAP
FARKDIPDWVKSNDKAMTYVAEMFLNDGSAYHDNYNAKLYRVLLRRDMEK
YWQNEILDLIPTWRNIANKGKQKTGISTTSTSGGSVNVNVGSAVRGALSR
FGRRDMIPNY
Run BLAST on NCBI

transcript from alignment at sc0001442:49646..58183+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036316 ID=TCONS_00036316|Name=TCONS_00036316|organism=Clytia hemisphaerica|type=transcript|length=8538bp|location=Sequence derived from alignment at sc0001442:49646..58183+ (Clytia hemisphaerica)
AtttgtattattttttcaatggtTTTGCAAGATTATTTTAGTCTTTGTTA
TTTAGAGCTCTTACTAGAAAGCCTTCATGATAAATAATGATCTTCtggca
ttgatatcatgaattatcatgattttttttccttttctttccttgacatt
tattgttttgttgtcctccaagcttttattttttgtttgtacttccATAA
CGATTCAAGCGTTCGGATTGGTTCAGAACGAAAACAATCGATCGGACGCA
GATATTTCAATAGAAAGAAAAGATTCTACAGCTTATTCTTCAATAGATGG
ATAGCacatttcttatcctctttttccaaaattggtATAAATACACTGAA
ATTTAACTGGATTAATCAATCCAGACTTCACTCTAGATTGCTGAAGAAGT
TGTTCTTTCACCAACTGAAAGTCCATTGATAAGGTAAGACATTtcattta
ttaattttcttaGCAAATCTTCCAATTTTCCAAGCCATAGGTAATCCATA
GATGTCCATTCGTTTCGTTTGATACTCCTAAtaatagagtcgatatttta
cgtggatagcccagcaatctaggacttttagacagtctttcgattgtttt
cacggggtccacctCCAGCCGTTCTATGGTAACTGGAAATGAGAGATAAA
TTCAGACGTAGAATATCATCAAGCTGGTTGTCGCACTATCATTCGAACTT
AAGATTGGTTTAGATTCAATTGATTCTTAAgtcagtgttttttacacttt
tgggaaaaacgtgaaaatttgggCACTTTTTTAAAACCAAATTTTAGAGA
GCAAGTTTTCGTTCATTATCAAATTTAGTGGTTCTATTGGAGAGAGAAAA
GATTAAAGATTCCATTCCTTTTTAAATGAACAATATAGCGTTATTGTACT
AAAAGTAACGATCTTTCAAAGTTTGGAGCAGTTAATCATAAATTTATTCC
ATTGGGAAATGGAAGAAATATTCCATCGGCAATAGCTCATTGAGTTTTTA
AGCTTTTGGGCTAAAATTTGGCAGGCAGAAGCCTTTAAGCGTTCCAATCC
GTAAAAGGAAGAATTATTCCATTTAGAGCAATTCTGGAGGAGTTATTCCA
CTTTTTCGTTCGTTGGATAAATCATTAActtcattcaaaatttcattggg
TAGTATTTGAGAAATCATGTTCAAGCAAGCATTTGTTCAATCTCAAGCAT
CCCTAGAATTGAAAagttaacatttttttggaaatggagCATGCANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgataaaaccttaaaaatt
tatgtttagCTTTAACTGACTTTTGTGACGGAATAAGCAATAAAAAAGTG
CTCTTCGCTTgtgtttttcgaaattcagggATGAAAAGGTGTAAGGAAAT
CGTATTTAGAACTTTGAAATTTGTATATAACaatttcaaatgagaaaaac
acaaaatctatttttttggaatatctcatCAAGTATTGCTCGAGGAAAAA
ACTTCAACAGATTTGAAATTATAATTCGCAACTTATTGGAAGTTTTCATC
CCAAAATAATCAAGAATCGTGATTTTAGACTGAAAAAACCGTTTNGTCTC
ATCAAGTATTGCTCgaggaaaaaatttcaacagaTTTGAAATTATAATTC
GCAACTTATTGGAAGTTTTCATCCCAAAATAATCAAGAATCGTGATTTTA
GACTGAAAAAAccgtttttgacgaaaattagttttcacgtttttgccaaa
agtgtaaaaaacactgacTTAACGTATTGATGACATCTTACTTTTCGCGC
AATCATTCGGAGTCAAATTAAAAATAGATCCTAAATTCACTTACATCAAG
CTGTAGACATTGAAATCCTCGTATTTCGCGTCCCAATTAGTCCAAATCCA
CTTATAAATTATATGTGATCTGAAAATAAGATACTaacccagacggcaca
caacgtcaaaacaatgcccatgtgacattcataacgtccaaataacgtta
tctgaacgttaaaacaacgtagtgtgccagctgggagtcGTAAAAATAAT
TAGCAAAGTACGGAAGCATATAAATTTCGATACTCTACTTTCAATTCGTA
AGTTTTCTCTTGGATCTTCTAGATTTCAGAGAGAAAAATGGCAACTTTTC
ATCAAGCAGTTGTGCTTCTGCTGGTAGCAGTAATATCAGTCCAATGCAAG
ATTTATTTGGTCCACAAATCCTCTAAGACTGGCAAATGTGGCTACAATGG
TTATGTTCCAGGAGGTCATGGACCATCTATCAAGCGAATCACATCCCCAG
AAGCGAAGTTACAAGAAGAGCAAATGTCAATGCTTGCTTTCAAAGATCCT
ACCGTAAATAAAGTCAAGAGTGTATCCAGGAAATATTATGACCAGTTGGT
CACAGTTTTTGGTGATGTGTGTCCACAAATTGGAATCGGTCTCGGTGTTT
TTGGTCTTGCAACCATGATTGAAGGAGATATTTCAGGTTCAGCACCACCT
ACTCATGCTGATGTCATCAAATCTGTCAATACAGCATTTGAAAAGTTAAC
TAAAGATGTTAATGCCCGTTTTGATCGTATGCAACATTACGTTAATCATC
AAATCATGAAATCTGAACGAGATTTAGTGAATGTCAAACTGAGGTCCATT
TTCAAATCTTGGGAAGATTGCATTGATGAGAAAACAAAGAATGGAGCGAT
CATGTGTCAAAAAAATGCTGTCCGAAAAATGAGAGGTATGTTTCATTTAA
TactttcaagaaaattttcattatctAAATTACGTTGGCCCTGAGATGTC
ACTGTTTCGTCACAAAATTTCAGTGTTTTATCACAACTTTCCAGGACACT
TTTCAGTGTTTCATCACGGAATGTTTGTGATAAAACACTGAAATTTTGTG
ACGAAACAGTGACATCTCAGGGCCATCGTACTAAATTCATTTCTCAGCAA
GTTCCTTCACTCGTTCTTTGATATGGATCAGAGAGAATTTATaagacatc
cctgtctcacagccccggtgaaactttttcctacagcggggataaaaatt
gtgATTGAAATCttaatggggataaaaattttattgttccaaggtaaaaa
aatccagtggggatggttttggagtgcaatttttaaacattgaatttcga
atggggacgaaatcaaagtcaatttctcattggggctgaaattctagggt
atttttcccactgggacaaaatttttgcaaaaattttcagtggggctggg
gccccagtgggtctgtgacacagaggtGTTATAAGTATGAGGGTGCCTAT
CGCCTTTTGAAAACGGTGGTTAGCTCCGGGGCAGAGTAAGCACTGACGGA
GGTGTTTAAAGTGTAACcgtttgttccaaactctaccgccacagACAGCT
TGTATAGTTTTTGTATCGAAATGACATAATATGTTCGCAAGCCAAGCTGT
CAAAGGAGGGCGTTATTAACTGCCAATAccacaatttcatttcataggtG
AAAGACCATTCTTTTACCCTGGTTTCGATAAGAGAAAAACTTGGTCTCTA
AGCAACCGACCACctgttgatgacgtcatcaaaatggaagccaattttat
tttatttcgtgATTATGCTTTGATTAATATCATGATGGTTCAAACTTTGG
TCAATATTTATCGAGAAGACAAGAAATTGCCGAATGCAAACATTTTGAGA
GATCAATATATCAATCAGGTAAAGTTTTATAcaatgttcaatttttttat
aaaaacatccaacatttttaaagctttaatgtgttctttactttttgagt
tttaaatgttctttaaattaatttccattttttgtgtgtgtttttgtgca
attttctgAGAATTGGGAGTTTAGAGTCAATAAAGgcattcaaattttct
taactttatctttatatatgttcttatatagtttgttcttataaaaaaat
atgtattctcaaattttcattaTGCAAATCTTACCAGTATGAATCTTTCA
TGGTTGTTTATTTTCACCCGGTATAATAGAGATCTATGAacacacgtttt
ttcataagaacatccaaaaaattttaaatctttagatattcttaactttt
ttagttttaagcctaaaaatgttcttaacatgttcttattttcaccatta
tttgagcatttttgtccattttcctaagaaattgggtactttagagtccc
caaagccttaaaatgttcttaacttgttcttaacatttttgccatcgaaa
tcttatgttcttatatggtttgttcttataaaaaaacgtgtattacattt
tccccatttttttcttcttcagctAAGCGAAGATGCAAATGATGCAATCG
AATACGcagaatttgtttttaaatggcTTAAAGATTTGTATGATGAACGA
AGCAAAAATTATTGTAAAGACAGTTTAACATGCAAACGAAAACAAGAGGG
TGATATTTTAAGAGGTAATCTTACGTTCTTTGTGTAAACAGTATCCAAAC
TAAATTTTAGGAGGCTCATCTTTTAcatccctttctcacagacccggccc
aattttttcagccagtggggattgatattccataTTTTTTGTGGCTGGGG
ATttcatttccattgttttcgagccaaaaaattcagttgggattgaaaaa
aatagcacaatattttgcaatgaTGATTTGTTTATCTGGTTATTTTCAac
agggacaaaaattagagcaTAGTTTTCCACTTAGATACGATATTTTGGCA
AACCTTTCCAATGGGAAGGGATTTCTGTGAGAAGGAAAATGAGATAAAAC
ATTAATTTAGCAGGAAGAGATAAATTGATTGGAGGAAAGATGGAATTTCA
AATTCCAATGGACGGGATTGGAGAGGGGGGTAAGTAATAAGGTTAAGGAT
gagaatgaaaacaaaaccatCATTGGAAAGCTAGGTACTTTTATTGAAAA
CCCTATAGCAGGGTAAATACGATAAGTCAATATCAGGTGTTTTGGGGCAA
TAAGCAGGAGGaggaaattcttttttcacaCGTGGTCTCAATAAGGTCAA
ATAATTAACCAAGCGGGGTGTTTAAATGGGCAGAAAGAAACGAAAGTTGA
CAAGGGCTGTTAACCAAATTACGCAATTAGTATAAAAAACTAATATTTAA
ATTGCTTTAAATTCATTTAGGTGATTGTGCATGTATTTTTGCGGCTAATT
TAAAAGAAGAATGTCACACgcaaattcaaatcaaaacaaaaggtgGACAA
GTGGCACCATTTGCAAGGAAAGACATACCAGATTGGGTCAAATCGAATGA
CAAAGCGATGACTTACGTTGCTGAGATGTTTCTTAACGACGGATGTAAGT
GATTGTGTACAATTCTTGCAGGCAGTTGGGGGGATATTGCTCATATCACC
GAGATTTTCCATTGCTAAAGCACTTATGCAAAatgagtacacgttttttc
ttttgataagaacatccaaaatttgtgaagccttcggatgttcttaattt
tttcagatttaatgagcctaaaaatgttcttaaacatgttcttatttttg
ccattttgtgggtatttttgtgCGTTTCCCTAAGAAATCGGTTTTTctta
gagtccccaaagccttaaaatgttcttaaaatgctcttaaaatttcgacc
atcgaagtcttatgttcttatacagtttgttcttataaaaaaacgtgtat
ataagATGATACATTTTTTACATCTCAATTATCTCTCCAAGGTTTATTTA
AACAAATGCACTCTCTCAAAAGGGTCTCAAAATAGGTCATGCAACATCTT
TCTCACAAGGGTTGATTTCAAACCTTTGACGATTCTAGATTCTGCAGAGG
GAACCCTTCGCTCATAAAATCGCTCTTGCTTTTCTTCATTCTAGCCGCCT
ACCATGATAATTACAAtgcaaaattatatcgagttttATTGCGAAGAGAT
ATGGAAAAGTATTGGCAAAACGAAATCTTGGATTTGATTCCAACATGGAG
AAACATTGCGAATAAAGGGAAACAAAAGACTGGTATTAGCACAACATCGA
CTTCTGGAGGAAGTGTGAATGTGAATGTTGGATCTGCAGTTCGAGGAGCT
CTTAGCAGGTTTGGTAGACGAGATATGATCCCCAATTACTGATCAGTGAA
GCTAAGGATACAAGAAGCCGAAAATTTaatgatttcattgaaaaattctA
ATTGAAATGATAACATTGAAATTTACGATAACATTTTACGTAATAATAAG
TAACTATAATTAAAAGATGAATGTCATGGTCAATTGGCTCCTGCTTATTG
CTCCAAACATACTTCTAAGGGGGCTTTCTAGTCCATCGTTTATAATCTGT
TTTATAAGATACTAAAATATCTTCTtagttctttctttcttttgaaatta
gctCTAACTTTGTAACCTGTTTTATTTTTGACCCATCTTCTTTTAGTTGA
AATAAAGTAAATTTGTGCTTTAAAAAAGTATTGTTTTTGCTTCGAAAGTT
ATATCCATTAAAGACTTCAGTCAGAGAGATGATAAGATAATTATTGGCCT
TGACTCTCCAATCACTCGCTGTGAAAATTCAAGGGACATAAAAATACTGA
CGaactttgtaaacaaaccgtatgcagcgggatacaaaatcaaaacaaat
gtcacatgtcaaaataaaaattaaaaacaaatgtggctgattttgattgt
gtcaattattttacaattttgttttggacacgtgattttaattgttctct
ttaatgacacgtggtttgcgcaatgtttacattttactacttttatgtcc
ctttaagagaATAACAGAAGGGCGTGCATATTTTGATATTGGAAAATCTT
Gaagagaataaaaaaaatcttgaaaatgcttataataaaaaaatattttt
gatgtacTATAGAAAGGCTAAATTTCCGATCACCATTGTAAAACAAGAGA
CCTAAAGTAAGTAGGAGACGCTGTCTTCAATGTCTTCAATGCGAAAGTTT
GACCATTTTAGGTACAATACCCAGGCCAATTgtgtttcaaataaaagaaa
gaagaattGTTTTTTCTCACGAGGAACCAAAAAGATGCCTTCTATGGTGC
TTAAGTAAGTAAAAGAAAGATTAAAAAACAACTACCataattaaaaataa
gttatttaaaaacaattaaCAATTTAATAAAAAGACTAATAATATTTGCC
TAGCACTAATTTGTAGTTATTAACTTTGTAGGGGAAACCTTCTTAAGTAA
AAAGCGTCgaaatttcaaggaaaatgacaaaattttcc

Coding sequence (CDS) from alignment at sc0001442:49646..58183+

>TCONS_00036316 ID=TCONS_00036316|Name=TCONS_00036316|organism=Clytia hemisphaerica|type=CDS|length=6915bp|location=Sequence derived from alignment at sc0001442:49646..58183+ (Clytia hemisphaerica)
ATGGCAACTTTTCATCAAGCAGTTGTGCTTCTGCTGGTAGCAGTAATATC
AGTCCAATGCAAGATTTATTTGGTCCACAAATCCTCTAAGACTGGCAAAT
GTGGCTACAATGGTTATGTTCCAGGAGGTCATGGACCATCTATCAAGCGA
ATCACATCCCCAGAAGCGAAGTTACAAGAAGAGCAAATGTCAATGCTTGC
TTTCAAAGATCCTACCGTAAATAAAGTCAAGAGTGTATCCAGGAAATATT
ATGACCAGTTGGTCACAGTTTTTGGTGATGTGTGTCCACAAATTGGAATC
GGTCTCGGTGTTTTTGGTCTTGCAACCATGATTGAAGGAGATATTTCAGG
TTCAGCACCACCTACTCATGCTGATGTCATCAAATCTGTCAATACAGCAT
TTGAAAAGTTAACTAAAGATGTTAATGCCCGTTTTGATCGTATGCAACAT
TACGTTAATCATCAAATCATGAAATCTGAACGAGATTTAGTGAATGTCAA
ACTGAGGTCCATTTTCAAATCTTGGGAAGATTGCATTGATGAGAAAACAA
AGAATGGAGCGATCATGTGTCAAAAAAATGCTGTCCGAAAAATGAGAGgt
GAAAGACCATTCTTTTACCCTGGTTTCGATAAGAGAAAAACTTGGTCTCT
AAGCAACCGACCACctgttgatgacgtcatcaaaatggaagccaatttta
ttttatttcgtgATTATGCTTTGATTAATATCATGATGGTTCAAACTTTG
GTCAATATTTATCGAGAAGACAAGAAATTGCCGAATGCAAACATTTTGAG
AGATCAATATATCAATCAGctAAGCGAAGATGCAAATGATGCAATCGAAT
ACGcagaatttgtttttaaatggcTTAAAGATTTGTATGATGAACGAAGC
AAAAATTATTGTAAAGACAGTTTAACATGCAAACGAAAACAAGAGGGTGA
TATTTTAAGAGGTGATTGTGCATGTATTTTTGCGGCTAATTTAAAAGAAG
AATGTCACACgcaaattcaaatcaaaacaaaaggtgGACAAGTGGCACCA
TTTGCAAGGAAAGACATACCAGATTGGGTCAAATCGAATGACAAAGCGAT
GACTTACGTTGCTGAGATGTTTCTTAACGACGGATCCGCCTACCATGATA
ATTACAAtgcaaaattatatcgagttttATTGCGAAGAGATATGGAAAAG
TATTGGCAAAACGAAATCTTGGATTTGATTCCAACATGGAGAAACATTGC
GAATAAAGGGAAACAAAAGACTGGTATTAGCACAACATCGACTTCTGGAG
GAAGTGTGAATGTGAATGTTGGATCTGCAGTTCGAGGAGCTCTTAGCAGG
TTTGGTAGACGAGATATGATCCCCAATTACTGAATGGCAACTTTTCATCA
AGCAGTTGTGCTTCTGCTGGTAGCAGTAATATCAGTCCAATGCAAGATTT
ATTTGGTCCACAAATCCTCTAAGACTGGCAAATGTGGCTACAATGGTTAT
GTTCCAGGAGGTCATGGACCATCTATCAAGCGAATCACATCCCCAGAAGC
GAAGTTACAAGAAGAGCAAATGTCAATGCTTGCTTTCAAAGATCCTACCG
TAAATAAAGTCAAGAGTGTATCCAGGAAATATTATGACCAGTTGGTCACA
GTTTTTGGTGATGTGTGTCCACAAATTGGAATCGGTCTCGGTGTTTTTGG
TCTTGCAACCATGATTGAAGGAGATATTTCAGGTTCAGCACCACCTACTC
ATGCTGATGTCATCAAATCTGTCAATACAGCATTTGAAAAGTTAACTAAA
GATGTTAATGCCCGTTTTGATCGTATGCAACATTACGTTAATCATCAAAT
CATGAAATCTGAACGAGATTTAGTGAATGTCAAACTGAGGTCCATTTTCA
AATCTTGGGAAGATTGCATTGATGAGAAAACAAAGAATGGAGCGATCATG
TGTCAAAAAAATGCTGTCCGAAAAATGAGAGgtGAAAGACCATTCTTTTA
CCCTGGTTTCGATAAGAGAAAAACTTGGTCTCTAAGCAACCGACCACctg
ttgatgacgtcatcaaaatggaagccaattttattttatttcgtgATTAT
GCTTTGATTAATATCATGATGGTTCAAACTTTGGTCAATATTTATCGAGA
AGACAAGAAATTGCCGAATGCAAACATTTTGAGAGATCAATATATCAATC
AGctAAGCGAAGATGCAAATGATGCAATCGAATACGcagaatttgttttt
aaatggcTTAAAGATTTGTATGATGAACGAAGCAAAAATTATTGTAAAGA
CAGTTTAACATGCAAACGAAAACAAGAGGGTGATATTTTAAGAGGTGATT
GTGCATGTATTTTTGCGGCTAATTTAAAAGAAGAATGTCACACgcaaatt
caaatcaaaacaaaaggtgGACAAGTGGCACCATTTGCAAGGAAAGACAT
ACCAGATTGGGTCAAATCGAATGACAAAGCGATGACTTACGTTGCTGAGA
TGTTTCTTAACGACGGATCCGCCTACCATGATAATTACAAtgcaaaatta
tatcgagttttATTGCGAAGAGATATGGAAAAGTATTGGCAAAACGAAAT
CTTGGATTTGATTCCAACATGGAGAAACATTGCGAATAAAGGGAAACAAA
AGACTGGTATTAGCACAACATCGACTTCTGGAGGAAGTGTGAATGTGAAT
GTTGGATCTGCAGTTCGAGGAGCTCTTAGCAGGTTTGGTAGACGAGATAT
GATCCCCAATTACTGAATGGCAACTTTTCATCAAGCAGTTGTGCTTCTGC
TGGTAGCAGTAATATCAGTCCAATGCAAGATTTATTTGGTCCACAAATCC
TCTAAGACTGGCAAATGTGGCTACAATGGTTATGTTCCAGGAGGTCATGG
ACCATCTATCAAGCGAATCACATCCCCAGAAGCGAAGTTACAAGAAGAGC
AAATGTCAATGCTTGCTTTCAAAGATCCTACCGTAAATAAAGTCAAGAGT
GTATCCAGGAAATATTATGACCAGTTGGTCACAGTTTTTGGTGATGTGTG
TCCACAAATTGGAATCGGTCTCGGTGTTTTTGGTCTTGCAACCATGATTG
AAGGAGATATTTCAGGTTCAGCACCACCTACTCATGCTGATGTCATCAAA
TCTGTCAATACAGCATTTGAAAAGTTAACTAAAGATGTTAATGCCCGTTT
TGATCGTATGCAACATTACGTTAATCATCAAATCATGAAATCTGAACGAG
ATTTAGTGAATGTCAAACTGAGGTCCATTTTCAAATCTTGGGAAGATTGC
ATTGATGAGAAAACAAAGAATGGAGCGATCATGTGTCAAAAAAATGCTGT
CCGAAAAATGAGAGgtGAAAGACCATTCTTTTACCCTGGTTTCGATAAGA
GAAAAACTTGGTCTCTAAGCAACCGACCACctgttgatgacgtcatcaaa
atggaagccaattttattttatttcgtgATTATGCTTTGATTAATATCAT
GATGGTTCAAACTTTGGTCAATATTTATCGAGAAGACAAGAAATTGCCGA
ATGCAAACATTTTGAGAGATCAATATATCAATCAGctAAGCGAAGATGCA
AATGATGCAATCGAATACGcagaatttgtttttaaatggcTTAAAGATTT
GTATGATGAACGAAGCAAAAATTATTGTAAAGACAGTTTAACATGCAAAC
GAAAACAAGAGGGTGATATTTTAAGAGGTGATTGTGCATGTATTTTTGCG
GCTAATTTAAAAGAAGAATGTCACACgcaaattcaaatcaaaacaaaagg
tgGACAAGTGGCACCATTTGCAAGGAAAGACATACCAGATTGGGTCAAAT
CGAATGACAAAGCGATGACTTACGTTGCTGAGATGTTTCTTAACGACGGA
TCCGCCTACCATGATAATTACAAtgcaaaattatatcgagttttATTGCG
AAGAGATATGGAAAAGTATTGGCAAAACGAAATCTTGGATTTGATTCCAA
CATGGAGAAACATTGCGAATAAAGGGAAACAAAAGACTGGTATTAGCACA
ACATCGACTTCTGGAGGAAGTGTGAATGTGAATGTTGGATCTGCAGTTCG
AGGAGCTCTTAGCAGGTTTGGTAGACGAGATATGATCCCCAATTACTGAA
TGGCAACTTTTCATCAAGCAGTTGTGCTTCTGCTGGTAGCAGTAATATCA
GTCCAATGCAAGATTTATTTGGTCCACAAATCCTCTAAGACTGGCAAATG
TGGCTACAATGGTTATGTTCCAGGAGGTCATGGACCATCTATCAAGCGAA
TCACATCCCCAGAAGCGAAGTTACAAGAAGAGCAAATGTCAATGCTTGCT
TTCAAAGATCCTACCGTAAATAAAGTCAAGAGTGTATCCAGGAAATATTA
TGACCAGTTGGTCACAGTTTTTGGTGATGTGTGTCCACAAATTGGAATCG
GTCTCGGTGTTTTTGGTCTTGCAACCATGATTGAAGGAGATATTTCAGGT
TCAGCACCACCTACTCATGCTGATGTCATCAAATCTGTCAATACAGCATT
TGAAAAGTTAACTAAAGATGTTAATGCCCGTTTTGATCGTATGCAACATT
ACGTTAATCATCAAATCATGAAATCTGAACGAGATTTAGTGAATGTCAAA
CTGAGGTCCATTTTCAAATCTTGGGAAGATTGCATTGATGAGAAAACAAA
GAATGGAGCGATCATGTGTCAAAAAAATGCTGTCCGAAAAATGAGAGgtG
AAAGACCATTCTTTTACCCTGGTTTCGATAAGAGAAAAACTTGGTCTCTA
AGCAACCGACCACctgttgatgacgtcatcaaaatggaagccaattttat
tttatttcgtgATTATGCTTTGATTAATATCATGATGGTTCAAACTTTGG
TCAATATTTATCGAGAAGACAAGAAATTGCCGAATGCAAACATTTTGAGA
GATCAATATATCAATCAGctAAGCGAAGATGCAAATGATGCAATCGAATA
CGcagaatttgtttttaaatggcTTAAAGATTTGTATGATGAACGAAGCA
AAAATTATTGTAAAGACAGTTTAACATGCAAACGAAAACAAGAGGGTGAT
ATTTTAAGAGGTGATTGTGCATGTATTTTTGCGGCTAATTTAAAAGAAGA
ATGTCACACgcaaattcaaatcaaaacaaaaggtgGACAAGTGGCACCAT
TTGCAAGGAAAGACATACCAGATTGGGTCAAATCGAATGACAAAGCGATG
ACTTACGTTGCTGAGATGTTTCTTAACGACGGATCCGCCTACCATGATAA
TTACAAtgcaaaattatatcgagttttATTGCGAAGAGATATGGAAAAGT
ATTGGCAAAACGAAATCTTGGATTTGATTCCAACATGGAGAAACATTGCG
AATAAAGGGAAACAAAAGACTGGTATTAGCACAACATCGACTTCTGGAGG
AAGTGTGAATGTGAATGTTGGATCTGCAGTTCGAGGAGCTCTTAGCAGGT
TTGGTAGACGAGATATGATCCCCAATTACTGAATGGCAACTTTTCATCAA
GCAGTTGTGCTTCTGCTGGTAGCAGTAATATCAGTCCAATGCAAGATTTA
TTTGGTCCACAAATCCTCTAAGACTGGCAAATGTGGCTACAATGGTTATG
TTCCAGGAGGTCATGGACCATCTATCAAGCGAATCACATCCCCAGAAGCG
AAGTTACAAGAAGAGCAAATGTCAATGCTTGCTTTCAAAGATCCTACCGT
AAATAAAGTCAAGAGTGTATCCAGGAAATATTATGACCAGTTGGTCACAG
TTTTTGGTGATGTGTGTCCACAAATTGGAATCGGTCTCGGTGTTTTTGGT
CTTGCAACCATGATTGAAGGAGATATTTCAGGTTCAGCACCACCTACTCA
TGCTGATGTCATCAAATCTGTCAATACAGCATTTGAAAAGTTAACTAAAG
ATGTTAATGCCCGTTTTGATCGTATGCAACATTACGTTAATCATCAAATC
ATGAAATCTGAACGAGATTTAGTGAATGTCAAACTGAGGTCCATTTTCAA
ATCTTGGGAAGATTGCATTGATGAGAAAACAAAGAATGGAGCGATCATGT
GTCAAAAAAATGCTGTCCGAAAAATGAGAGgtGAAAGACCATTCTTTTAC
CCTGGTTTCGATAAGAGAAAAACTTGGTCTCTAAGCAACCGACCACctgt
tgatgacgtcatcaaaatggaagccaattttattttatttcgtgATTATG
CTTTGATTAATATCATGATGGTTCAAACTTTGGTCAATATTTATCGAGAA
GACAAGAAATTGCCGAATGCAAACATTTTGAGAGATCAATATATCAATCA
GctAAGCGAAGATGCAAATGATGCAATCGAATACGcagaatttgttttta
aatggcTTAAAGATTTGTATGATGAACGAAGCAAAAATTATTGTAAAGAC
AGTTTAACATGCAAACGAAAACAAGAGGGTGATATTTTAAGAGGTGATTG
TGCATGTATTTTTGCGGCTAATTTAAAAGAAGAATGTCACACgcaaattc
aaatcaaaacaaaaggtgGACAAGTGGCACCATTTGCAAGGAAAGACATA
CCAGATTGGGTCAAATCGAATGACAAAGCGATGACTTACGTTGCTGAGAT
GTTTCTTAACGACGGATCCGCCTACCATGATAATTACAAtgcaaaattat
atcgagttttATTGCGAAGAGATATGGAAAAGTATTGGCAAAACGAAATC
TTGGATTTGATTCCAACATGGAGAAACATTGCGAATAAAGGGAAACAAAA
GACTGGTATTAGCACAACATCGACTTCTGGAGGAAGTGTGAATGTGAATG
TTGGATCTGCAGTTCGAGGAGCTCTTAGCAGGTTTGGTAGACGAGATATG
ATCCCCAATTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021374XLOC_021374Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036316-exon-sc0001442-1491911889:49646..50078TCONS_00036316-exon-sc0001442-1491911889:49646..50078Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1510915933:49646..50078TCONS_00036316-exon-sc0001442-1510915933:49646..50078Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1575043694:49646..50078TCONS_00036316-exon-sc0001442-1575043694:49646..50078Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1491911889:53018..53630TCONS_00036316-exon-sc0001442-1491911889:53018..53630Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1510915933:53018..53630TCONS_00036316-exon-sc0001442-1510915933:53018..53630Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1575043694:53018..53630TCONS_00036316-exon-sc0001442-1575043694:53018..53630Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1491911889:54393..54613TCONS_00036316-exon-sc0001442-1491911889:54393..54613Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1510915933:54393..54613TCONS_00036316-exon-sc0001442-1510915933:54393..54613Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1575043694:54393..54613TCONS_00036316-exon-sc0001442-1575043694:54393..54613Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1491911889:55218..55359TCONS_00036316-exon-sc0001442-1491911889:55218..55359Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1510915933:55218..55359TCONS_00036316-exon-sc0001442-1510915933:55218..55359Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1575043694:55218..55359TCONS_00036316-exon-sc0001442-1575043694:55218..55359Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1491911889:56066..56239TCONS_00036316-exon-sc0001442-1491911889:56066..56239Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1510915933:56066..56239TCONS_00036316-exon-sc0001442-1510915933:56066..56239Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1575043694:56066..56239TCONS_00036316-exon-sc0001442-1575043694:56066..56239Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1491911889:56790..58183TCONS_00036316-exon-sc0001442-1491911889:56790..58183Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1510915933:56790..58183TCONS_00036316-exon-sc0001442-1510915933:56790..58183Clytia hemisphaericaexon
TCONS_00036316-exon-sc0001442-1575043694:56790..58183TCONS_00036316-exon-sc0001442-1575043694:56790..58183Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036316-proteinTCONS_00036316-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001442supercontigsc0001442:49646..58183 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.500181	1.19552	1.32761	0.589497	0.202778	0.189034	0.654496	1.06754	54.5661	14.2023	28.9362	40.5699	3.65141	0.824454	44.4015	50.8538	0.223515	1.60424	1.69606	1.35927	0.728088	1.28383	0.555114	0.911406	0.48189	0.726584	0.387331	0.435366	0.584853	0.791371
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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