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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036309 ID=TCONS_00036309|Name=TCONS_00036309|organism=Clytia hemisphaerica|type=transcript|length=1491bp
AGGAAAAATTAATATATTGTTACAACTTCGGACGTACAAGTACTGatata
aataaaatgaaaaggcTATTTGATAACTTTCGGATAAACAAACGTTCGAA
TAAATCGAATGGCGGACCTGCAAGGACCAAAGAGAAATGTGTGAACATTC
GAATTCCCGTGTTTCAAACTTCTCAATGACGTCAATCAGCAACATACAAA
AAGTATCAGCTGTTTAATTCGAATTTTGTAATGACGTCACGAAGTTAACT
GGCTGATTATAAAAGGGCGCGAAAATAATAAATCACTTTCGCTTTTGATT
TACAAAATTGTGACGAGACTTGTTAGTTTAGTTCAAAAATCAATCAATTT
ATCTATTAAAATGGCCGcattaaaaaatattcttttttactGTGATTGTG
ACAATTCTACCGTCATTGTGCCTTTAAAGAAGGTGACTTGGGAGGAAGTT
GGAAAAGTTGGACACTTTATGGACGGAGATGAGAAAGTTCGTGGTGAAGT
GCTGAAAATGGCCGGCATCAGCCAAAACAACCTATGCTGAGGTAGCAAAG
ACACCAGTCAAACCAAAGACCAAATCAACAGCAAGTACTAAACCAACTGT
TGCGAAACCGATcatcaaaaaaacaaagaaaagattaaCCAAGGTTGCCA
AAGCAAAAGCAGCAAGGTCAAAAGACTGTGAAGTGGACAATAGTGGCCCT
GCAGAGCCTCGTGAGATGAGTCAATCAGAAAGGGATGCAATCAACAAATT
CAATTTGAAGAAAGACGCAAAAATGAAGGAAGTGAATGGGTTTATGATAA
GACGAGTGCAAGTTGCAAACAGCATGGGCAACGACGGTTTCGATCCATCC
AAATCTCTTCAAAAAACACAACTCAGGGCAAAAACAACACCAAAACCCAA
CACTTTAGAACGTACGACACCAAAGACTGCAGAACCAATAAAGCCTGTCA
CTCCAGAACTCACTCCAGAACCATTAAAGCCCGCCACTCCAGAACCAGCA
GAGCCTATCACTCCAGAACCTGTGAAACCAAACACTCAAGAACAACCAGA
ACAACCGAACTCTCCAGAACAACCAGAACAACCGAACTCTCCAGAACAAC
CAGAACAACCGAACTCTCCAGAATCAGCAAAACCCAACTCTCCAGAATCA
GCAAAACCCAACACTCCAGAATCAGCAAAACCCAACTCTCCAGAATCAGC
AAAACCCAACACTCCAGAAAAAGCAAAAACCAACACTCCAGAACCTTTGA
AACCCGACACTCCAGAACCTTTGAAACCCGACACTCCAGAACAAACAATT
CACCTTGAGCCAATCAAACCAATAACACCTGAACAAGCCACATTCCTGAG
AAACAAATCGAATACCTCAGTTGAGCACAATTGGACACTTCCTGGAGCAA
TGCCTTCCTTCAGTATTGCATCCACTCCGAACATGACACGGATTCCAAAT
TGTAATTGCAACTTGGTCAAAGTGATGCAGTGGATGGAAAC Run BLAST on NCBI protein sequence of TCONS_00036309-protein >TCONS_00036309-protein ID=TCONS_00036309-protein|Name=TCONS_00036309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MSQSERDAINKFNLKKDAKMKEVNGFMIRRVQVANSMGNDGFDPSKSLQK
TQLRAKTTPKPNTLERTTPKTAEPIKPVTPELTPEPLKPATPEPAEPITP
EPVKPNTQEQPEQPNSPEQPEQPNSPEQPEQPNSPESAKPNSPESAKPNT
PESAKPNSPESAKPNTPEKAKTNTPEPLKPDTPEPLKPDTPEQTIHLEPI
KPITPEQATFLRNKSNTSVEHNWTLPGAMPSFSIASTPNMTRIPNCNCNL
VKVMQWME Run BLAST on NCBI transcript from alignment at sc0001439:3679..7721+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036309 ID=TCONS_00036309|Name=TCONS_00036309|organism=Clytia hemisphaerica|type=transcript|length=4043bp|location=Sequence derived from alignment at sc0001439:3679..7721+ (Clytia hemisphaerica)
AGGAAAAATTAATATATTGTTACAACTTCGGACGTACAAGTACTGatata
aataaaatgaaaaggcTATTTGATAACTTTCGGATAAACAAACGTTCGAA
TAAATCGAATGGCGGACCTGCAAGGACCAAAGAGAAATGTGTGAACATTC
GAATTCCCGTGTTTCAAACTTCTCAATGACGTCAATCAGCAACATACAAA
AAGTATCAGCTGTTTAATTCGAATTTTGTAATGACGTCACGAAGTTAACT
GGCTGATTATAAAAGGGCGCGAAAATAATAAATCACTTTCGCTTTTGATT
TACAAAATTGTGACGAGACTTGTTAGTTTAGTTCAAAAATCAATCAATTT
ATCTATTAAAATGGCCGcattaaaaaatattcttttttactGTGATTGTG
ACAATTCTACCGTCATTGTGCCTTTAAAGAAGGTGACTTGGGAGGAAGTT
GGAAAAGTTGGACACTTTATGGACGGAGATGAGAAAGTTCGTGGTGAAGT
GCTGAAAATGGCCGgtaagaaaacatttttcgtgTACTTAATAGGCTTCA
AATACttcaggcgtacaaactttcacaacatttttcaaaatatgcatATT
TTACGCGATTTGCGTAAGAGATTGTGATTTTCAGGAAAGACCATTATGCG
CGAAAACTTTTTTGAACTTTAAACTTTCATGgaactttttagcctgctag
aaCAAAGAATAAATGTTTCAAGCTGAACCAAGGAGTTTGTCCCCCTAAGC
CACTTTTTCGTgagaaaattctcaaattttcatctaaattcgcgaaagtt
tgaaCGCAGAAAGTAGTTCGTTCGTCTTGCAGTAATACGGTACATTAGAT
TTCTTATTATGAGAAAGTCCTATTCCGAAGCGCACACAATTTCCCCCAGA
AAGCCTCTTCTACACTTTACAGATCATCTAAATAATGACGCAATGTTTTA
CTGATTTTTTAATTCTTCGGAATGGGACCTTTCTCTCACTGTTATTATAA
AAGATCAACTAATTTAGGAGTACACACTTTTGCAaggcaaaataaaaatt
ttcgactttttcgcaagcataaacttacaaaattaaattgcaaaaatttt
cgaaacgagaaaagttgaaaaggtCATACGGCTAAAacttctttattttg
ttttagcaACGAAGAAAGAGTTGATCGAGTGGGAGAAGACTGAGAAAACC
AAAAAAACCAACACCAAGGTATAACAATAATTTATTTAAGACGTTAAGAT
GAGTGGACGTATACGTTGTCTTCTTTCGTTGTCTTCTTTCGTTGTTTTCT
TCCTCCCAATGCACTAAAACAAGAAGGGTAGAATACATTAATTATGCCGA
ATCTTAATGCGAGACATTTGAACTTCACTGAACACCTTACCTCTCTTAAA
AAGTTACAGCACTTTGAAGTTTAGTGATCTATAGCCAACTATGTTCTGAA
AGAATTCTTCGTGTACAGACTTGTTTTAgaattagaatttttaaatggtc
aattaaagtctgtctcaaaataatttgcagctgagtcaaaaatggctgta
acttttgatataattcAAATCAAGTTGCGAtcttgtgctcgttgaaaaga
tattttagagtggaatattatcaagcaaaaaaatacggaaaaaaaggaaa
aatgaaaatgaaaaaacttcttgtagaaatggggtataattaccattttc
acaggagttatgatctaagattgaagaatcacccCTGTGAAAATGGTGAT
TATACcccatttctacaaaaagttgattttttactcctttcatttttatt
ttttcaacgagCACGAACTCGCAACtcaattcgaattctatcaaaagtta
tcatttttgcctcagctgcaaattattttgagacataATTAAGGTCCATA
AGATTACAAAAACGAGTGATGATACTTTTTTACTAATTTGTTGGTCCCAT
GTGACGTTTTCACTTTTGCTGGCGTTtgaaaattcaagttaaaatcaGAA
GCTCAgatatggctcaaatgaaaggCATTTATCCaagaattccaaaaaat
atcacaacatatatctgaaaagcaatatttgagaagctatgAATATAAAT
AGCAAATGTATGCCCCTTGTCTCATGGCATGATTTTCGAAGTAGTAGAAA
AAACttcatcttttttaaaaaatcctaaaagtATTCTTCTTATAATTACC
TTTCTAATGGTCGATAACTTTCTGACATAGCATGAATGGGTTTTTTTAGA
CATGCTGAAGTATTTTATCAAACCTTTACTTTCAGGCATCAGCCAAAACA
ACCTATGCTGAGGTAGCAAAGACACCAGTCAAACCAAAGACCAAATCAAC
AGCAAGTACTAAACCAACTGTTGCGAAACCGATcatcaaaaaaacaaaga
aaagattaaCCAAGGTTGCCAAAGCAAAAGCAGCAAGGTCAAAAGACTGT
GAAGTGGACAATAGTGGCCCTGCAGAGGTAAAAACAGACAACTTACTTTT
TCCAGATTAGGGACTTTCGAAATAAAGTTTTTATTCAGCGTTTGTGCCAG
CATTGAACATCAACTGCAGCAACTAAAAAATAATACAAgtactattttaa
attttgtcaaaaaaaaaacaccctgGTATTCAAAATTCTTCTGTATAATA
ATGTCAATAATTATCTGGTAGGtagaaaattgaaaagagagcggtaaaag
aattttcttgattttaattAGAACCACTTTTCTTTGATTCAAAGAGGGCT
ACAGCTAAAAAAATACTGCAAATTTTACGTTTGACACAAATCAATgtcaa
tttcaaataaaattaaaacagtTTCATGATCAGACAAGCTTAAAATTATT
TACCTTTATAAGCAAGTGATTTTACTCTTCTTATTCTTTATACGTTGGGT
TGGGGGTGATTTGCAATCTTCTTAGGATCCATCAATACAGCtagtaaata
aaagaaaatacattaaaggaagagaaagaaattttaataGAAAATCTAAT
TCTGCCATGggtattcaaaattaaaaaaaattgttgattcgccaaaataa
gttctaaaaaattttctggtttgcgagaatttgaaaaaaaaattgaattg
actcttcgtcaaaattagttcaaaattcatttcaattttaaatctgtttt
ggaaaaattatgaagattcaatgataaaaatttgtcctttgaaattattt
aatcAAAAAAGTTGCCCAAAAGAATAACATTTACAATTTTAAGTATATGC
ATTTCTAGCCTCGTGAGATGAGTCAATCAGAAAGGGATGCAATCAACAAA
TTCAATTTGAAGAAAGACGCAAAAATGAAGGAAGTGAATGGGTTTATGAT
AAGACGAGTGCAAGTTGCAAACAGCATGGGCAACGACGGTTTCGATCCAT
CCAAATCTCTTCAAAAAACACAACTCAGGGCAAAAACAACACCAAAACCC
AACACTTTAGAACGTACGACACCAAAGACTGCAGAACCAATAAAGCCTGT
CACTCCAGAACTCACTCCAGAACCATTAAAGCCCGCCACTCCAGAACCAG
CAGAGCCTATCACTCCAGAACCTGTGAAACCAAACACTCAAGAACAACCA
GAACAACCGAACTCTCCAGAACAACCAGAACAACCGAACTCTCCAGAACA
ACCAGAACAACCGAACTCTCCAGAATCAGCAAAACCCAACTCTCCAGAAT
CAGCAAAACCCAACACTCCAGAATCAGCAAAACCCAACTCTCCAGAATCA
GCAAAACCCAACACTCCAGAAAAAGCAAAAACCAACACTCCAGAACCTTT
GAAACCCGACACTCCAGAACCTTTGAAACCCGACACTCCAGAACAAACAA
TTCACCTTGAGCCAATCAAACCAATAACACCTGAACAAGCCACATTCCTG
AGAAACAAATCGAATACCTCAGTTGAGCACAATTGGACACTTCCTGGAGC
AATGCCTTCCTTCAGTATTGCATCCACTCCGAACATGACACGGATTCCAA
ATTGTAATTGCAACTTGGTCAAAGTGATGCAGTGGATGGAAAC Coding sequence (CDS) from alignment at sc0001439:3679..7721+ >TCONS_00036309 ID=TCONS_00036309|Name=TCONS_00036309|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at sc0001439:3679..7721+ (Clytia hemisphaerica)
ATGAGTCAATCAGAAAGGGATGCAATCAACAAATTCAATTTGAAGAAAGA
CGCAAAAATGAAGGAAGTGAATGGGTTTATGATAAGACGAGTGCAAGTTG
CAAACAGCATGGGCAACGACGGTTTCGATCCATCCAAATCTCTTCAAAAA
ACACAACTCAGGGCAAAAACAACACCAAAACCCAACACTTTAGAACGTAC
GACACCAAAGACTGCAGAACCAATAAAGCCTGTCACTCCAGAACTCACTC
CAGAACCATTAAAGCCCGCCACTCCAGAACCAGCAGAGCCTATCACTCCA
GAACCTGTGAAACCAAACACTCAAGAACAACCAGAACAACCGAACTCTCC
AGAACAACCAGAACAACCGAACTCTCCAGAACAACCAGAACAACCGAACT
CTCCAGAATCAGCAAAACCCAACTCTCCAGAATCAGCAAAACCCAACACT
CCAGAATCAGCAAAACCCAACTCTCCAGAATCAGCAAAACCCAACACTCC
AGAAAAAGCAAAAACCAACACTCCAGAACCTTTGAAACCCGACACTCCAG
AACCTTTGAAACCCGACACTCCAGAACAAACAATTCACCTTGAGCCAATC
AAACCAATAACACCTGAACAAGCCACATTCCTGAGAAACAAATCGAATAC
CTCAGTTGAGCACAATTGGACACTTCCTGGAGCAATGCCTTCCTTCAGTA
TTGCATCCACTCCGAACATGACACGGATTCCAAATTGTAATTGCAACTTG
GTCAAAGTGATGCAGTGGATGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036309-exon-sc0001439-1491911889:3679..4192 | TCONS_00036309-exon-sc0001439-1491911889:3679..4192 | Clytia hemisphaerica | exon |
| TCONS_00036309-exon-sc0001439-1510915933:3679..4192 | TCONS_00036309-exon-sc0001439-1510915933:3679..4192 | Clytia hemisphaerica | exon |
| TCONS_00036309-exon-sc0001439-1575043694:3679..4192 | TCONS_00036309-exon-sc0001439-1575043694:3679..4192 | Clytia hemisphaerica | exon |
| TCONS_00036309-exon-sc0001439-1491911889:5964..6155 | TCONS_00036309-exon-sc0001439-1491911889:5964..6155 | Clytia hemisphaerica | exon |
| TCONS_00036309-exon-sc0001439-1510915933:5964..6155 | TCONS_00036309-exon-sc0001439-1510915933:5964..6155 | Clytia hemisphaerica | exon |
| TCONS_00036309-exon-sc0001439-1575043694:5964..6155 | TCONS_00036309-exon-sc0001439-1575043694:5964..6155 | Clytia hemisphaerica | exon |
| TCONS_00036309-exon-sc0001439-1491911889:6937..7721 | TCONS_00036309-exon-sc0001439-1491911889:6937..7721 | Clytia hemisphaerica | exon |
| TCONS_00036309-exon-sc0001439-1510915933:6937..7721 | TCONS_00036309-exon-sc0001439-1510915933:6937..7721 | Clytia hemisphaerica | exon |
| TCONS_00036309-exon-sc0001439-1575043694:6937..7721 | TCONS_00036309-exon-sc0001439-1575043694:6937..7721 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001439 | supercontig | sc0001439:3679..7721 + |
Blast
The following BLAST results are available for this feature:
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