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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036306 ID=TCONS_00036306|Name=TCONS_00036306|organism=Clytia hemisphaerica|type=transcript|length=840bp
ACGAACGGCTTTCACTTTTTTCGGACAGGCATTTCTCATTACCAATAGTT
CTTTCTGTTGATATAGTTCCTTAAGTTTTACATCCTCATGCCACGGCTGG
TGTAGTTTTCGGGCAACTATTTTCGGAATCGTTTCGTCTGCAGCTTCTTG
AATAGAAGTAATAAAGTGTTCGTTGAGTTGAGTATTCGATTGCATTTCTG
GCTGAATATACTCAAGCTTGATGGAGAGATTCCTTTTAAAGTTTTGTTCT
GTCTCTGCTCGATTCAGGGATTTGAAGTCAAAACGTTTCTTTGGTGATTT
CATTCGATGCTTTGCCACCAACAGCTACCGTGGTGATTCACCGTATAGCT
ATGTTTTAGCCCGCTGGCACGAGAAAAGTAAATCTGGGGATATTGTATTC
CGACCGGCTATCATAAAGAGTTTGTATCAAGTCCTAGCATGGGAGGATAG
TCAAGATAAAAATTTTTGGGTCGCTGAAGTTGGATGGTTTAAGGAGTACG
AAGAGAGGAAGAAATTTTACTACGGTGAAAATTCAAAGACAACAATCTGG
AAAACAACCTTCGAGCAGAACCACACCTTTATTCcagtaaggtttataaa
gaaTAGATTCGTTTACTTGAAAGAGAGTATCAAATTTGGGAAAGAACCAG
CAGACGTTACTATTTGTATAGAAATACCCTTTAATTCTTTCTTGTAAAAT
ACACTTTTTAATAGCAATATCATGGTACAGAAACACTCCCATAGGTTAGG
TTCGTGACACAGGACTGTATGTAACAACTTCCTTTTTGTTGATAAATTCT
TAGACCTTCACCCCGTTGAAGCCTTGAAGGTgggaataca Run BLAST on NCBI protein sequence of TCONS_00036306-protein >TCONS_00036306-protein ID=TCONS_00036306-protein|Name=TCONS_00036306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MERFLLKFCSVSARFRDLKSKRFFGDFIRCFATNSYRGDSPYSYVLARWH
EKSKSGDIVFRPAIIKSLYQVLAWEDSQDKNFWVAEVGWFKEYEERKKFY
YGENSKTTIWKTTFEQNHTFIPVRFIKNRFVYLKESIKFGKEPADVTICI
EIPFNSFL Run BLAST on NCBI transcript from alignment at sc0001437:11494..12333 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036306 ID=TCONS_00036306|Name=TCONS_00036306|organism=Clytia hemisphaerica|type=transcript|length=840bp|location=Sequence derived from alignment at sc0001437:11494..12333 (Clytia hemisphaerica)
tgtattcccACCTTCAAGGCTTCAACGGGGTGAAGGTCTAAGAATTTATC
AACAAAAAGGAAGTTGTTACATACAGTCCTGTGTCACGAACCTAACCTAT
GGGAGTGTTTCTGTACCATGATATTGCTATTAAAAAGTGTATTTTACAAG
AAAGAATTAAAGGGTATTTCTATACAAATAGTAACGTCTGCTGGTTCTTT
CCCAAATTTGATACTCTCTTTCAAGTAAACGAATCTAttctttataaacc
ttactgGAATAAAGGTGTGGTTCTGCTCGAAGGTTGTTTTCCAGATTGTT
GTCTTTGAATTTTCACCGTAGTAAAATTTCTTCCTCTCTTCGTACTCCTT
AAACCATCCAACTTCAGCGACCCAAAAATTTTTATCTTGACTATCCTCCC
ATGCTAGGACTTGATACAAACTCTTTATGATAGCCGGTCGGAATACAATA
TCCCCAGATTTACTTTTCTCGTGCCAGCGGGCTAAAACATAGCTATACGG
TGAATCACCACGGTAGCTGTTGGTGGCAAAGCATCGAATGAAATCACCAA
AGAAACGTTTTGACTTCAAATCCCTGAATCGAGCAGAGACAGAACAAAAC
TTTAAAAGGAATCTCTCCATCAAGCTTGAGTATATTCAGCCAGAAATGCA
ATCGAATACTCAACTCAACGAACACTTTATTACTTCTATTCAAGAAGCTG
CAGACGAAACGATTCCGAAAATAGTTGCCCGAAAACTACACCAGCCGTGG
CATGAGGATGTAAAACTTAAGGAACTATATCAACAGAAAGAACTATTGGT
AATGAGAAATGCCTGTCCGAAAAAAGTGAAAGCCGTTCGT Coding sequence (CDS) from alignment at sc0001437:11494..12333 >TCONS_00036306 ID=TCONS_00036306|Name=TCONS_00036306|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0001437:11494..12333 (Clytia hemisphaerica)
TTACAAGAAAGAATTAAAGGGTATTTCTATACAAATAGTAACGTCTGCTG
GTTCTTTCCCAAATTTGATACTCTCTTTCAAGTAAACGAATCTAttcttt
ataaaccttactgGAATAAAGGTGTGGTTCTGCTCGAAGGTTGTTTTCCA
GATTGTTGTCTTTGAATTTTCACCGTAGTAAAATTTCTTCCTCTCTTCGT
ACTCCTTAAACCATCCAACTTCAGCGACCCAAAAATTTTTATCTTGACTA
TCCTCCCATGCTAGGACTTGATACAAACTCTTTATGATAGCCGGTCGGAA
TACAATATCCCCAGATTTACTTTTCTCGTGCCAGCGGGCTAAAACATAGC
TATACGGTGAATCACCACGGTAGCTGTTGGTGGCAAAGCATCGAATGAAA
TCACCAAAGAAACGTTTTGACTTCAAATCCCTGAATCGAGCAGAGACAGA
ACAAAACTTTAAAAGGAATCTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036306-exon-sc0001437-1491911889:11494..12333 | TCONS_00036306-exon-sc0001437-1491911889:11494..12333 | Clytia hemisphaerica | exon |
| TCONS_00036306-exon-sc0001437-1510915933:11494..12333 | TCONS_00036306-exon-sc0001437-1510915933:11494..12333 | Clytia hemisphaerica | exon |
| TCONS_00036306-exon-sc0001437-1575043694:11494..12333 | TCONS_00036306-exon-sc0001437-1575043694:11494..12333 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001437 | supercontig | sc0001437:11494..12333 . |
Blast
The following BLAST results are available for this feature:
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