TCONS_00036273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036273
Unique NameTCONS_00036273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036273 ID=TCONS_00036273|Name=TCONS_00036273|organism=Clytia hemisphaerica|type=transcript|length=269bp
caaaaatgtcataaaatgtcctaaaaaagcattaaaaactgtcataaatt
cataaaaaaattagctAAATCAAGAGTGGGAGACCTGATAGACGCAAAAA
GACTTAAGATTTACTATCAGGGATACCCATCTTTCACGAAGAAGATgtta
ttgaaattgaaaatggtaCAATAGGCAATGGTCAATTTGGAAATGTGAAA
GCTTTTAGATTAAAAAGGCTCAATATTGTGGTCGCTTGCAAAACAATGTC
AGATGAAACATCGTCTAAA
Run BLAST on NCBI

transcript from alignment at sc0001433:19972..20240

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036273 ID=TCONS_00036273|Name=TCONS_00036273|organism=Clytia hemisphaerica|type=transcript|length=269bp|location=Sequence derived from alignment at sc0001433:19972..20240 (Clytia hemisphaerica)
TTTAGACGATGTTTCATCTGACATTGTTTTGCAAGCGACCACAATATTGA
GCCTTTTTAATCTAAAAGCTTTCACATTTCCAAATTGACCATTGCCTATT
GtaccattttcaatttcaataacATCTTCTTCGTGAAAGATGGGTATCCC
TGATAGTAAATCTTAAGTCTTTTTGCGTCTATCAGGTCTCCCACTCTTGA
TTTagctaatttttttatgaatttatgacagtttttaatgcttttttagg
acattttatgacatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021335XLOC_021335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036273-exon-sc0001433-1491911889:19972..20240TCONS_00036273-exon-sc0001433-1491911889:19972..20240Clytia hemisphaericaexon
TCONS_00036273-exon-sc0001433-1510915933:19972..20240TCONS_00036273-exon-sc0001433-1510915933:19972..20240Clytia hemisphaericaexon
TCONS_00036273-exon-sc0001433-1575043694:19972..20240TCONS_00036273-exon-sc0001433-1575043694:19972..20240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001433supercontigsc0001433:19972..20240 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58201	0.560585	1.72632	1.02646	13.2261	5.68496	4.70161	9.04455	1.93772	2.18939	0	0.845099	0	0	0.380788	1.75154	0	0.88465	1.22219	0.639468	1.41977	3.05641	0.659131	0	6.30006	1.4254	0	0	0.684052	0.650079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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