TCONS_00036226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036226
Unique NameTCONS_00036226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036226 ID=TCONS_00036226|Name=TCONS_00036226|organism=Clytia hemisphaerica|type=transcript|length=1271bp
aggaagaagaaaaacaaaatataatcaaaacaaaacatgatGTATGAAAT
TGAGCCACATCTTTATCTCTCGAATATCACTGCTGCAAAAAATCAACAAT
TATTGCAACAAAACATTATCTCCATAGTCTTAACAGTTGATGCTCAACCT
CTAGGAGGTAGTGGTGgtgaaatagaaaatatttatattGAAATGAATGA
CGACCTGAAAACGAATTTGGTTGAGAAGCTACCTCAATGTATTGATGTGA
TTGAAGACTGTGTTATGGAGAAACGCAATATTCTAGTACACTGTCATGCT
GGTGTATCACGAAGTGCATCTGTTGTTATCGCTTACGTCATGAAGTCACG
TGGCTTATCATTACGTCATGCTTCGGATCACGTGAAAAGCAGAAAACAAG
ACGTCATGTATGTCGAATCACTAACTCTCCATTTTTTAAGTAGgCCAAAC
CCTTGTTTCATGTACCAACTGCAGGTTTTTGAGAAGATGGGATGTAAATT
GGAGAAGGaatctactttttataaagAATTGATGGTGAAGTTCGATCAAC
AAGAAAAAATCAGTCAAGCGATAAATGCTGGTGATTATTGGTCCATCAAA
GAGCAGGAAAGTGCTTCAAACAATAACAAAGAGATCAAGAAAAGGATTAC
TTATAAGTGTCGCTCTTGCAGAATCTTGTTGTTCACATCAGAAGCCCTAA
GTGAAGACCACGCGGAAAATGCCAAAGAATGTACTTCACTTTATTTGCTT
GAACCGCtagattggatgaaaaaagccATGAATGCTGATATCCAAGGAAA
GATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTTCAACTGGTCTG
GTAGAACATGTTCTTGTGGTATGTGGATTACACCATCATTTCAAGTTCAG
AAGTCACGAGTCGACCATTCGTTCCCAAAGTAATGTTTTTACAGTCACCA
AGTTTAGTGCTACGATGAACACGTTCCGTGTACGTCACGCCAAGCCACTT
CAAGGTCACCTGTGATAGCGTTTGTGGACGAAGGAAATATCCCGTGGGTA
ACAGTAAGAGTCGATCTTTTCGACGTAATATAAAATGTCGAACTTTAAAC
GTTGTGGTATAAAAGAGCAGAATTCGTAAACGAGCCAAGGTGCATCAGCT
TGGAGTAAGAGTCTTGTGATAACGTAAGAAGACATTTGTAAATCCTTCCT
GTACAAAGGTAAACATAGAATGattcaaatcaaatttaaatGTACTTAAT
TACTTTTTAAGGTCCTTTTCg
Run BLAST on NCBI

transcript from alignment at sc0001428:37422..40823+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036226 ID=TCONS_00036226|Name=TCONS_00036226|organism=Clytia hemisphaerica|type=transcript|length=3402bp|location=Sequence derived from alignment at sc0001428:37422..40823+ (Clytia hemisphaerica)
aggaagaagaaaaacaaaatataatcaaaacaaaacatgatGTATGAAAT
TGAGCCACATCTTTATCTCTCGAATATCACTGCTGCAAAAAATCAACAAT
TATTGCAACAAAACATTATCTCCATAGTCTTAACAGTTGATGCTCAACCT
CTAGGAGGTAGTGGTGgtgaaatagaaaatatttatattGAAATGAATGA
CGACCTGAAAACGAATTTGGTTGAGAAGCTACCTCAATGTATTGATGTGA
TTGAAGACTGTGTTATGGAGAAACGCAATATTCTAGTACACTGGTAAAGA
CTAACGCATTTTAAATCTAGATGTAGTTTAAAAACGCCATAGTAAAGACT
AATCtccttttattcaaatttgtctTTGTTCGTTTCAAAGAAGACTGGTG
CATTTCGTTTGATGACTCTCTTAATTGCGATCTCGTCAAGCTTGTTGAAG
TAAATGAAGAAGAATACCTTGTCGGCCAGTGTCGgcaaaagttgtttttt
tgcaaaaaattcaaatgagCCTAAAATGGAAACTTGCATTTCCCTCTCAT
TAGcttcttttaaaattctttgtcTAGGTAGCACATAAACCCAAAATTTA
ATTTCAGCGAAATAATGTTCAATTAActaattccgtcactttttactGGC
GAGTTTTCCACTGATTTCCAACTTTCAAAACCTTCCTTTTGTGTTTTTCA
GTCATGCTGGTGTATCACGAAGTGCATCTGTTGTTATCGCTTACGTCATG
AAGTCACGTGGCTTATCATTACGTCATGCTTCGGATCACGTGAAAAGCAG
AAAACAAGACGTCATGTATGTCGAATCACTAACTCTCCATTTTTTAAGTA
GGCTATAATTACCTCGTGAAATTATGCTCCATCAAGCTACAGTTCCCAAA
TCATTTCTTTTCGGTTTTAAACAAGATATACGAAAGGAAagtattgattt
ttcgaagatgaTCGATAGTGAACAAAATGGTCGGACTGACCATACAACTT
TAAAGAACACTTGACAACTTTTGCAACATTATTAGAAGCCAGTATTTTTT
AGAACCGATTTGCTTTTactctttttttaactttcaggCCAAACCCTTGT
TTCATGTACCAACTGCAGGTTTTTGAGAAGATGGGATGTAAATTGGAGAA
GGaatctactttttataaagAATTGATGGTGAAGTTCGATCAACAAGAAA
AAATCAGTAATGAATGCGTTCTTTCTTGTCTGTTATTCTTTGTCACAACA
ATGAAAAATTCCATCAACGATTGAGAATATATAGTGAAGAAGGTTAGGAT
GTCTCATTTTGAACTTTCCAAGAAGTGCAAATTGCGTACCATGGAGTTAT
ATAGGTTATCCCCCAGTTTTATGACAATCTATCTTGGTTTAATGAACTCT
TTTCTAGGTCAAGCGATAAATGCTGGTGATTATTGGTCCATCAAAGAGCA
GGAAAGTGCTTCAAACAATAACAAAGAGATCAAGAAAAGGATTACTTATA
AGTGTCGCTCTTGCAGGTattataataatttattttgtttttttataccC
ATCGGGCTGTTTTTATTGACTACTATTGATGACTGGTggcataaaatttc
aaaaaatttaatcaaGTCATACattgttttccattttttcctTCGTAGAA
TCTTGTTGTTCACATCAGAAGCCCTAAGTGAAGACCACGCGGAAAATGCC
AAAGAATGTACTTCACTTTATTTGCTTGAACCGCtagattggatgaaaaa
agccATGAATGCTGATATCCAAGGAAAGGTACTGACCCTCGTGTTTTTTT
CATNNNNNNNNNNNNNNNNNNNCTGGTggcataaaatttcaaaaaattta
atcaaGTCATACattgttttccattttttcctTCGTAGAATCTTGTTGTT
CACATCAGAAGCCCTAAGTGAAGACCACGCGGAAAATGCCAAAGAATGTA
CTTCACTTTATTTGCTTGAACCGCtagattggatgaaaaaagccATGAAT
GCTGATATCCAAGGAAAGGTACTGACCCTCgtgtttatttcattattttg
ctTTAATTGAGGATAtgatataatattttttccaGACAACAATTTAAGAG
GTTGATATATTACAAAGATGGTATTTTCAGAAGAATGAACGTATTTAACT
ATCGCAGAAGCAACTAGGGTCTTGATATTTAAACAGCAAAGTAAAGCTGT
CTTTATGTCGGAATTTTTGGAGAAACAATGAAACGATCTCTTATTTTCGC
TTTTTTAGATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTTCAAC
TGGTCTGGTAGGTTAAACTTTAGGTTAAACTTTCAATTTAGCATTTTCAA
GGGTGTAGAACCTCAAAATCCAGCAGCCGGAAAAAGAGCTGGCcgcatta
cttcgaataaacgccccgggcgtttgttaaattttttggattttaggagg
ggcgtttaaaatagggggcgtttattcgaagcaATACAGTATACAgtctt
ttgacatttttcggctaactttgaaaaattgacttgCATTCATAAAGCGG
ACCACTGCTGAACCGAAATAATCATACCGGGGTGTACCAGAAATAAATGA
CCATCCTTGAAGTAGAATTTTTTTAGCtccatttgaagaaaaattaaagt
atttctggcacacccggtattttgatcaaattttagaTGTTTTCACCTAT
CCAGCATGAAAACTATCCCAAAACATAATCTATAATAACCTAAAATAAAT
GCCACAAGGTAGTACTTAGATATTGAGTTAAATCGCCAACGAATGGAAAA
TAGTTGTTGTTTCCTGCGCTTGTAACTTGCTTTTTTTAAAACGTCAAGTT
CCAAATATACAAATATAAAAAAGCCCGTCTTGTTTGAATAAATTAAATCA
ATTCGATTGTGATGATAATCAATCATGAGATACAAGTATTTTGCTCAAAA
GTACAATTGGACCATTTTCTTTCACTACTAGGTAGAACATGTTCTTGTGG
TATGTGGATTACACCATCATTTCAAGTTCAGAAGTCACGAGTCGACCATT
CGTTCCCAAAGTAATGTTTTTACAGTCACCAAGTTTAGTGCTACGATGAA
CACGTTCCGTGTACGTCACGCCAAGCCACTTCAAGGTCACCTGTGATAGC
GTTTGTGGACGAAGGAAATATCCCGTGGGTAACAGTAAGAGTCGATCTTT
TCGACGTAATATAAAATGTCGAACTTTAAACGTTGTGGTATAAAAGAGCA
GAATTCGTAAACGAGCCAAGGTGCATCAGCTTGGAGTAAGAGTCTTGTGA
TAACGTAAGAAGACATTTGTAAATCCTTCCTGTACAAAGGTAAACATAGA
ATGattcaaatcaaatttaaatGTACTTAATTACTTTTTAAGGTCCTTTT
Cg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021307XLOC_021307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036226-exon-sc0001428-1491911889:37422..37714TCONS_00036226-exon-sc0001428-1491911889:37422..37714Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1510915933:37422..37714TCONS_00036226-exon-sc0001428-1510915933:37422..37714Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1575043694:37422..37714TCONS_00036226-exon-sc0001428-1575043694:37422..37714Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1491911889:38123..38272TCONS_00036226-exon-sc0001428-1491911889:38123..38272Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1510915933:38123..38272TCONS_00036226-exon-sc0001428-1510915933:38123..38272Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1575043694:38123..38272TCONS_00036226-exon-sc0001428-1575043694:38123..38272Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1491911889:38509..38627TCONS_00036226-exon-sc0001428-1491911889:38509..38627Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1510915933:38509..38627TCONS_00036226-exon-sc0001428-1510915933:38509..38627Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1575043694:38509..38627TCONS_00036226-exon-sc0001428-1575043694:38509..38627Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1491911889:38829..38937TCONS_00036226-exon-sc0001428-1491911889:38829..38937Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1510915933:38829..38937TCONS_00036226-exon-sc0001428-1510915933:38829..38937Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1575043694:38829..38937TCONS_00036226-exon-sc0001428-1575043694:38829..38937Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1491911889:39070..39199TCONS_00036226-exon-sc0001428-1491911889:39070..39199Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1510915933:39070..39199TCONS_00036226-exon-sc0001428-1510915933:39070..39199Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1575043694:39070..39199TCONS_00036226-exon-sc0001428-1575043694:39070..39199Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1491911889:39680..39728TCONS_00036226-exon-sc0001428-1491911889:39680..39728Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1510915933:39680..39728TCONS_00036226-exon-sc0001428-1510915933:39680..39728Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1575043694:39680..39728TCONS_00036226-exon-sc0001428-1575043694:39680..39728Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1491911889:40403..40823TCONS_00036226-exon-sc0001428-1491911889:40403..40823Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1510915933:40403..40823TCONS_00036226-exon-sc0001428-1510915933:40403..40823Clytia hemisphaericaexon
TCONS_00036226-exon-sc0001428-1575043694:40403..40823TCONS_00036226-exon-sc0001428-1575043694:40403..40823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:37422..40823 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.157313	0.163751	0.551348	0.117751	0	0	0.355698	0.13883	0	0	0	0.413306	0	0	0	0	0.290658	0.218999	0	0.540811	0	3.93766e-09	0.165956	0	0
Blast
[Close]
BLAST of TCONS_00036226 vs. Swiss-Prot (Human)
Match: DUS12 (Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.833e-47
Identity = 102/324 (31.48%), Postives = 168/324 (51.85%), Query Frame = 1 
Query:   34 NMMYEIEPHLYLSNITAAKXXXXXXXXXXSIVLTVDAQ-PLGGSGGEIENI---YIEMNDDLKTNLVEKLPQCIDVIEDCVMEKRNILVHCHAGVSRSASVVIAYVMKSRGLSLRHASDHVKSRKQDVMYVESLTLHFLSRPNPCFMYQLQVFEKMGCKLEKESTFYKELMV-----KFDQQEKISQAINAGDYWSIKEQESASNNNKEIKKRITYKCRSCRILLFTSEALSEDHAENA---------------------KECTSLYLLEPLDWMKKAMNADIQGKINCFKCSGKLGMFNWSGRTCSCGMWITPSFQVQKSRVD 915
              M E++P LY     A      L++  I+ VLTVD++ P   +G  +E++   ++   D  +T+L+  L +C+  I     E R +LVHCHAGVSRS +++ A++MK+  L    A + ++  K +            ++ N  F +QL++++ MG +++  S  YK+  +     K+ + + + Q + A D  ++         ++ +K  + YKCR CR  LF S ++  DH E +                      +CTS Y +EP+ WM+ A+   + G++ C KCS KLG FNW G  CSCG WITP+FQ+ K+RVD
Sbjct:   25 GQMLEVQPGLYFGGAAAVAEPDHLREAGITAVLTVDSEEPSFKAGPGVEDLWRLFVPALDKPETDLLSHLDRCVAFIGQARAEGRAVLVHCHAGVSRSVAIITAFLMKTDQLPFEKAYEKLQILKPE------------AKMNEGFEWQLKLYQAMGYEVDTSSAIYKQYRLQKVTEKYPELQNLPQELFAVDPTTV---------SQGLKDEVLYKCRKCRRSLFRSSSIL-DHREGSGPIAFAHKRMTPSSMLTTGRQAQCTS-YFIEPVQWMESALLGVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVD 325
The following BLAST results are available for this feature:
BLAST of TCONS_00036226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS121.833e-4731.48Dual specificity protein phosphatase 12 OS=Homo sa... [more]
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