TCONS_00036225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036225
Unique NameTCONS_00036225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036225 ID=TCONS_00036225|Name=TCONS_00036225|organism=Clytia hemisphaerica|type=transcript|length=1271bp
aggaagaagaaaaacaaaatataatcaaaacaaaacatgatGTATGAAAT
TGAGCCACATCTTTATCTCTCGAATATCACTGCTGCAAAAAATCAACAAT
TATTGCAACAAAACATTATCTCCATAGTCTTAACAGTTGATGCTCAACCT
CTAGGAGGTAGTGGTGgtgaaatagaaaatatttatattGAAATGAATGA
CGACCTGAAAACGAATTTGGTTGAGAAGCTACCTCAATGTATTGATGTGA
TTGAAGACTGTGTTATGGAGAAACGCAATATTCTAGTACACTGTCATGCT
GGTGTATCACGAAGTGCATCTGTTGTTATCGCTTACGTCATGAAGTCACG
TGGCTTATCATTACGTCATGCTTCGGATCACGTGAAAAGCAGAAAACAAG
ACGTCATGTATGTCGAATCACTAACTCTCCATTTTTTAAGTAGgCCAAAC
CCTTGTTTCATGTACCAACTGCAGGTTTTTGAGAAGATGGGATGTAAATT
GGAGAAGGaatctactttttataaagAATTGATGGTGAAGTTCGATCAAC
AAGAAAAAATCAGTCAAGCGATAAATGCTGGTGATTATTGGTCCATCAAA
GAGCAGGAAAGTGCTTCAAACAATAACAAAGAGATCAAGAAAAGGATTAC
TTATAAGTGTCGCTCTTGCAGAATCTTGTTGTTCACATCAGAAGCCCTAA
GTGAAGACCACGCGGAAAATGCCAAAGAATGTACTTCACTTTATTTGCTT
GAACCGCtagattggatgaaaaaagccATGAATGCTGATATCCAAGGAAA
GATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTTCAACTGGTCTG
GTAGAACATGTTCTTGTGGTATGTGGATTACACCATCATTTCAAGTTCAG
AAGTCACGAGTCGACCATTCGTTCCCAAAGTAATGTTTTTACAGTCACCA
AGTTTAGTGCTACGATGAACACGTTCCGTGTACGTCACGCCAAGCCACTT
CAAGGTCACCTGTGATAGCGTTTGTGGACGAAGGAAATATCCCGTGGGTA
ACAGTAAGAGTCGATCTTTTCGACGTAATATAAAATGTCGAACTTTAAAC
GTTGTGGTATAAAAGAGCAGAATTCGTAAACGAGCCAAGGTGCATCAGCT
TGGAGTAAGAGTCTTGTGATAACGTAAGAAGACATTTGTAAATCCTTCCT
GTACAAAGGTAAACATAGAATGattcaaatcaaatttaaatGTACTTAAT
TACTTTTTAAGGTCCTTTTCg
Run BLAST on NCBI

protein sequence of TCONS_00036225-protein

>TCONS_00036225-protein ID=TCONS_00036225-protein|Name=TCONS_00036225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MMYEIEPHLYLSNITAAKNQQLLQQNIISIVLTVDAQPLGGSGGEIENIY
IEMNDDLKTNLVEKLPQCIDVIEDCVMEKRNILVHCHAGVSRSASVVIAY
VMKSRGLSLRHASDHVKSRKQDVMYVESLTLHFLSRPNPCFMYQLQVFEK
MGCKLEKESTFYKELMVKFDQQEKISQAINAGDYWSIKEQESASNNNKEI
KKRITYKCRSCRILLFTSEALSEDHAENAKECTSLYLLEPLDWMKKAMNA
DIQGKINCFKCSGKLGMFNWSGRTCSCGMWITPSFQVQKSRVDHSFPK
Run BLAST on NCBI

transcript from alignment at sc0001428:37422..40823+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036225 ID=TCONS_00036225|Name=TCONS_00036225|organism=Clytia hemisphaerica|type=transcript|length=3402bp|location=Sequence derived from alignment at sc0001428:37422..40823+ (Clytia hemisphaerica)
aggaagaagaaaaacaaaatataatcaaaacaaaacatgatGTATGAAAT
TGAGCCACATCTTTATCTCTCGAATATCACTGCTGCAAAAAATCAACAAT
TATTGCAACAAAACATTATCTCCATAGTCTTAACAGTTGATGCTCAACCT
CTAGGAGGTAGTGGTGgtgaaatagaaaatatttatattGAAATGAATGA
CGACCTGAAAACGAATTTGGTTGAGAAGCTACCTCAATGTATTGATGTGA
TTGAAGACTGTGTTATGGAGAAACGCAATATTCTAGTACACTGGTAAAGA
CTAACGCATTTTAAATCTAGATGTAGTTTAAAAACGCCATAGTAAAGACT
AATCtccttttattcaaatttgtctTTGTTCGTTTCAAAGAAGACTGGTG
CATTTCGTTTGATGACTCTCTTAATTGCGATCTCGTCAAGCTTGTTGAAG
TAAATGAAGAAGAATACCTTGTCGGCCAGTGTCGgcaaaagttgtttttt
tgcaaaaaattcaaatgagCCTAAAATGGAAACTTGCATTTCCCTCTCAT
TAGcttcttttaaaattctttgtcTAGGTAGCACATAAACCCAAAATTTA
ATTTCAGCGAAATAATGTTCAATTAActaattccgtcactttttactGGC
GAGTTTTCCACTGATTTCCAACTTTCAAAACCTTCCTTTTGTGTTTTTCA
GTCATGCTGGTGTATCACGAAGTGCATCTGTTGTTATCGCTTACGTCATG
AAGTCACGTGGCTTATCATTACGTCATGCTTCGGATCACGTGAAAAGCAG
AAAACAAGACGTCATGTATGTCGAATCACTAACTCTCCATTTTTTAAGTA
GGCTATAATTACCTCGTGAAATTATGCTCCATCAAGCTACAGTTCCCAAA
TCATTTCTTTTCGGTTTTAAACAAGATATACGAAAGGAAagtattgattt
ttcgaagatgaTCGATAGTGAACAAAATGGTCGGACTGACCATACAACTT
TAAAGAACACTTGACAACTTTTGCAACATTATTAGAAGCCAGTATTTTTT
AGAACCGATTTGCTTTTactctttttttaactttcaggCCAAACCCTTGT
TTCATGTACCAACTGCAGGTTTTTGAGAAGATGGGATGTAAATTGGAGAA
GGaatctactttttataaagAATTGATGGTGAAGTTCGATCAACAAGAAA
AAATCAGTAATGAATGCGTTCTTTCTTGTCTGTTATTCTTTGTCACAACA
ATGAAAAATTCCATCAACGATTGAGAATATATAGTGAAGAAGGTTAGGAT
GTCTCATTTTGAACTTTCCAAGAAGTGCAAATTGCGTACCATGGAGTTAT
ATAGGTTATCCCCCAGTTTTATGACAATCTATCTTGGTTTAATGAACTCT
TTTCTAGGTCAAGCGATAAATGCTGGTGATTATTGGTCCATCAAAGAGCA
GGAAAGTGCTTCAAACAATAACAAAGAGATCAAGAAAAGGATTACTTATA
AGTGTCGCTCTTGCAGGTattataataatttattttgtttttttataccC
ATCGGGCTGTTTTTATTGACTACTATTGATGACTGGTggcataaaatttc
aaaaaatttaatcaaGTCATACattgttttccattttttcctTCGTAGAA
TCTTGTTGTTCACATCAGAAGCCCTAAGTGAAGACCACGCGGAAAATGCC
AAAGAATGTACTTCACTTTATTTGCTTGAACCGCtagattggatgaaaaa
agccATGAATGCTGATATCCAAGGAAAGGTACTGACCCTCGTGTTTTTTT
CATNNNNNNNNNNNNNNNNNNNCTGGTggcataaaatttcaaaaaattta
atcaaGTCATACattgttttccattttttcctTCGTAGAATCTTGTTGTT
CACATCAGAAGCCCTAAGTGAAGACCACGCGGAAAATGCCAAAGAATGTA
CTTCACTTTATTTGCTTGAACCGCtagattggatgaaaaaagccATGAAT
GCTGATATCCAAGGAAAGGTACTGACCCTCgtgtttatttcattattttg
ctTTAATTGAGGATAtgatataatattttttccaGACAACAATTTAAGAG
GTTGATATATTACAAAGATGGTATTTTCAGAAGAATGAACGTATTTAACT
ATCGCAGAAGCAACTAGGGTCTTGATATTTAAACAGCAAAGTAAAGCTGT
CTTTATGTCGGAATTTTTGGAGAAACAATGAAACGATCTCTTATTTTCGC
TTTTTTAGATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTTCAAC
TGGTCTGGTAGGTTAAACTTTAGGTTAAACTTTCAATTTAGCATTTTCAA
GGGTGTAGAACCTCAAAATCCAGCAGCCGGAAAAAGAGCTGGCcgcatta
cttcgaataaacgccccgggcgtttgttaaattttttggattttaggagg
ggcgtttaaaatagggggcgtttattcgaagcaATACAGTATACAgtctt
ttgacatttttcggctaactttgaaaaattgacttgCATTCATAAAGCGG
ACCACTGCTGAACCGAAATAATCATACCGGGGTGTACCAGAAATAAATGA
CCATCCTTGAAGTAGAATTTTTTTAGCtccatttgaagaaaaattaaagt
atttctggcacacccggtattttgatcaaattttagaTGTTTTCACCTAT
CCAGCATGAAAACTATCCCAAAACATAATCTATAATAACCTAAAATAAAT
GCCACAAGGTAGTACTTAGATATTGAGTTAAATCGCCAACGAATGGAAAA
TAGTTGTTGTTTCCTGCGCTTGTAACTTGCTTTTTTTAAAACGTCAAGTT
CCAAATATACAAATATAAAAAAGCCCGTCTTGTTTGAATAAATTAAATCA
ATTCGATTGTGATGATAATCAATCATGAGATACAAGTATTTTGCTCAAAA
GTACAATTGGACCATTTTCTTTCACTACTAGGTAGAACATGTTCTTGTGG
TATGTGGATTACACCATCATTTCAAGTTCAGAAGTCACGAGTCGACCATT
CGTTCCCAAAGTAATGTTTTTACAGTCACCAAGTTTAGTGCTACGATGAA
CACGTTCCGTGTACGTCACGCCAAGCCACTTCAAGGTCACCTGTGATAGC
GTTTGTGGACGAAGGAAATATCCCGTGGGTAACAGTAAGAGTCGATCTTT
TCGACGTAATATAAAATGTCGAACTTTAAACGTTGTGGTATAAAAGAGCA
GAATTCGTAAACGAGCCAAGGTGCATCAGCTTGGAGTAAGAGTCTTGTGA
TAACGTAAGAAGACATTTGTAAATCCTTCCTGTACAAAGGTAAACATAGA
ATGattcaaatcaaatttaaatGTACTTAATTACTTTTTAAGGTCCTTTT
Cg

Coding sequence (CDS) from alignment at sc0001428:37422..40823+

>TCONS_00036225 ID=TCONS_00036225|Name=TCONS_00036225|organism=Clytia hemisphaerica|type=CDS|length=6279bp|location=Sequence derived from alignment at sc0001428:37422..40823+ (Clytia hemisphaerica)
atgatGTATGAAATTGAGCCACATCTTTATCTCTCGAATATCACTGCTGC
AAAAAATCAACAATTATTGCAACAAAACATTATCTCCATAGTCTTAACAG
TTGATGCTCAACCTCTAGGAGGTAGTGGTGgtgaaatagaaaatatttat
attGAAATGAATGACGACCTGAAAACGAATTTGGTTGAGAAGCTACCTCA
ATGTATTGATGTGATTGAAGACTGTGTTATGGAGAAACGCAATATTCTAG
TACACTGTCATGCTGGTGTATCACGAAGTGCATCTGTTGTTATCGCTTAC
GTCATGAAGTCACGTGGCTTATCATTACGTCATGCTTCGGATCACGTGAA
AAGCAGAAAACAAGACGTCATGTATGTCGAATCACTAACTCTCCATTTTT
TAAGTAGgCCAAACCCTTGTTTCATGTACCAACTGCAGGTTTTTGAGAAG
ATGGGATGTAAATTGGAGAAGGaatctactttttataaagAATTGATGGT
GAAGTTCGATCAACAAGAAAAAATCAGTCAAGCGATAAATGCTGGTGATT
ATTGGTCCATCAAAGAGCAGGAAAGTGCTTCAAACAATAACAAAGAGATC
AAGAAAAGGATTACTTATAAGTGTCGCTCTTGCAGAATCTTGTTGTTCAC
ATCAGAAGCCCTAAGTGAAGACCACGCGGAAAATGCCAAAGAATGTACTT
CACTTTATTTGCTTGAACCGCtagattggatgaaaaaagccATGAATGCT
GATATCCAAGGAAAGATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAAT
GTTCAACTGGTCTGGTAGAACATGTTCTTGTGGTATGTGGATTACACCAT
CATTTCAAGTTCAGAAGTCACGAGTCGACCATTCGTTCCCAAAGTAAatg
atGTATGAAATTGAGCCACATCTTTATCTCTCGAATATCACTGCTGCAAA
AAATCAACAATTATTGCAACAAAACATTATCTCCATAGTCTTAACAGTTG
ATGCTCAACCTCTAGGAGGTAGTGGTGgtgaaatagaaaatatttatatt
GAAATGAATGACGACCTGAAAACGAATTTGGTTGAGAAGCTACCTCAATG
TATTGATGTGATTGAAGACTGTGTTATGGAGAAACGCAATATTCTAGTAC
ACTGTCATGCTGGTGTATCACGAAGTGCATCTGTTGTTATCGCTTACGTC
ATGAAGTCACGTGGCTTATCATTACGTCATGCTTCGGATCACGTGAAAAG
CAGAAAACAAGACGTCATGTATGTCGAATCACTAACTCTCCATTTTTTAA
GTAGgCCAAACCCTTGTTTCATGTACCAACTGCAGGTTTTTGAGAAGATG
GGATGTAAATTGGAGAAGGaatctactttttataaagAATTGATGGTGAA
GTTCGATCAACAAGAAAAAATCAGTCAAGCGATAAATGCTGGTGATTATT
GGTCCATCAAAGAGCAGGAAAGTGCTTCAAACAATAACAAAGAGATCAAG
AAAAGGATTACTTATAAGTGTCGCTCTTGCAGAATCTTGTTGTTCACATC
AGAAGCCCTAAGTGAAGACCACGCGGAAAATGCCAAAGAATGTACTTCAC
TTTATTTGCTTGAACCGCtagattggatgaaaaaagccATGAATGCTGAT
ATCCAAGGAAAGATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTT
CAACTGGTCTGGTAGAACATGTTCTTGTGGTATGTGGATTACACCATCAT
TTCAAGTTCAGAAGTCACGAGTCGACCATTCGTTCCCAAAGTAAatgatG
TATGAAATTGAGCCACATCTTTATCTCTCGAATATCACTGCTGCAAAAAA
TCAACAATTATTGCAACAAAACATTATCTCCATAGTCTTAACAGTTGATG
CTCAACCTCTAGGAGGTAGTGGTGgtgaaatagaaaatatttatattGAA
ATGAATGACGACCTGAAAACGAATTTGGTTGAGAAGCTACCTCAATGTAT
TGATGTGATTGAAGACTGTGTTATGGAGAAACGCAATATTCTAGTACACT
GTCATGCTGGTGTATCACGAAGTGCATCTGTTGTTATCGCTTACGTCATG
AAGTCACGTGGCTTATCATTACGTCATGCTTCGGATCACGTGAAAAGCAG
AAAACAAGACGTCATGTATGTCGAATCACTAACTCTCCATTTTTTAAGTA
GgCCAAACCCTTGTTTCATGTACCAACTGCAGGTTTTTGAGAAGATGGGA
TGTAAATTGGAGAAGGaatctactttttataaagAATTGATGGTGAAGTT
CGATCAACAAGAAAAAATCAGTCAAGCGATAAATGCTGGTGATTATTGGT
CCATCAAAGAGCAGGAAAGTGCTTCAAACAATAACAAAGAGATCAAGAAA
AGGATTACTTATAAGTGTCGCTCTTGCAGAATCTTGTTGTTCACATCAGA
AGCCCTAAGTGAAGACCACGCGGAAAATGCCAAAGAATGTACTTCACTTT
ATTTGCTTGAACCGCtagattggatgaaaaaagccATGAATGCTGATATC
CAAGGAAAGATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTTCAA
CTGGTCTGGTAGAACATGTTCTTGTGGTATGTGGATTACACCATCATTTC
AAGTTCAGAAGTCACGAGTCGACCATTCGTTCCCAAAGTAAatgatGTAT
GAAATTGAGCCACATCTTTATCTCTCGAATATCACTGCTGCAAAAAATCA
ACAATTATTGCAACAAAACATTATCTCCATAGTCTTAACAGTTGATGCTC
AACCTCTAGGAGGTAGTGGTGgtgaaatagaaaatatttatattGAAATG
AATGACGACCTGAAAACGAATTTGGTTGAGAAGCTACCTCAATGTATTGA
TGTGATTGAAGACTGTGTTATGGAGAAACGCAATATTCTAGTACACTGTC
ATGCTGGTGTATCACGAAGTGCATCTGTTGTTATCGCTTACGTCATGAAG
TCACGTGGCTTATCATTACGTCATGCTTCGGATCACGTGAAAAGCAGAAA
ACAAGACGTCATGTATGTCGAATCACTAACTCTCCATTTTTTAAGTAGgC
CAAACCCTTGTTTCATGTACCAACTGCAGGTTTTTGAGAAGATGGGATGT
AAATTGGAGAAGGaatctactttttataaagAATTGATGGTGAAGTTCGA
TCAACAAGAAAAAATCAGTCAAGCGATAAATGCTGGTGATTATTGGTCCA
TCAAAGAGCAGGAAAGTGCTTCAAACAATAACAAAGAGATCAAGAAAAGG
ATTACTTATAAGTGTCGCTCTTGCAGAATCTTGTTGTTCACATCAGAAGC
CCTAAGTGAAGACCACGCGGAAAATGCCAAAGAATGTACTTCACTTTATT
TGCTTGAACCGCtagattggatgaaaaaagccATGAATGCTGATATCCAA
GGAAAGATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTTCAACTG
GTCTGGTAGAACATGTTCTTGTGGTATGTGGATTACACCATCATTTCAAG
TTCAGAAGTCACGAGTCGACCATTCGTTCCCAAAGTAAatgatGTATGAA
ATTGAGCCACATCTTTATCTCTCGAATATCACTGCTGCAAAAAATCAACA
ATTATTGCAACAAAACATTATCTCCATAGTCTTAACAGTTGATGCTCAAC
CTCTAGGAGGTAGTGGTGgtgaaatagaaaatatttatattGAAATGAAT
GACGACCTGAAAACGAATTTGGTTGAGAAGCTACCTCAATGTATTGATGT
GATTGAAGACTGTGTTATGGAGAAACGCAATATTCTAGTACACTGTCATG
CTGGTGTATCACGAAGTGCATCTGTTGTTATCGCTTACGTCATGAAGTCA
CGTGGCTTATCATTACGTCATGCTTCGGATCACGTGAAAAGCAGAAAACA
AGACGTCATGTATGTCGAATCACTAACTCTCCATTTTTTAAGTAGgCCAA
ACCCTTGTTTCATGTACCAACTGCAGGTTTTTGAGAAGATGGGATGTAAA
TTGGAGAAGGaatctactttttataaagAATTGATGGTGAAGTTCGATCA
ACAAGAAAAAATCAGTCAAGCGATAAATGCTGGTGATTATTGGTCCATCA
AAGAGCAGGAAAGTGCTTCAAACAATAACAAAGAGATCAAGAAAAGGATT
ACTTATAAGTGTCGCTCTTGCAGAATCTTGTTGTTCACATCAGAAGCCCT
AAGTGAAGACCACGCGGAAAATGCCAAAGAATGTACTTCACTTTATTTGC
TTGAACCGCtagattggatgaaaaaagccATGAATGCTGATATCCAAGGA
AAGATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTTCAACTGGTC
TGGTAGAACATGTTCTTGTGGTATGTGGATTACACCATCATTTCAAGTTC
AGAAGTCACGAGTCGACCATTCGTTCCCAAAGTAAatgatGTATGAAATT
GAGCCACATCTTTATCTCTCGAATATCACTGCTGCAAAAAATCAACAATT
ATTGCAACAAAACATTATCTCCATAGTCTTAACAGTTGATGCTCAACCTC
TAGGAGGTAGTGGTGgtgaaatagaaaatatttatattGAAATGAATGAC
GACCTGAAAACGAATTTGGTTGAGAAGCTACCTCAATGTATTGATGTGAT
TGAAGACTGTGTTATGGAGAAACGCAATATTCTAGTACACTGTCATGCTG
GTGTATCACGAAGTGCATCTGTTGTTATCGCTTACGTCATGAAGTCACGT
GGCTTATCATTACGTCATGCTTCGGATCACGTGAAAAGCAGAAAACAAGA
CGTCATGTATGTCGAATCACTAACTCTCCATTTTTTAAGTAGgCCAAACC
CTTGTTTCATGTACCAACTGCAGGTTTTTGAGAAGATGGGATGTAAATTG
GAGAAGGaatctactttttataaagAATTGATGGTGAAGTTCGATCAACA
AGAAAAAATCAGTCAAGCGATAAATGCTGGTGATTATTGGTCCATCAAAG
AGCAGGAAAGTGCTTCAAACAATAACAAAGAGATCAAGAAAAGGATTACT
TATAAGTGTCGCTCTTGCAGAATCTTGTTGTTCACATCAGAAGCCCTAAG
TGAAGACCACGCGGAAAATGCCAAAGAATGTACTTCACTTTATTTGCTTG
AACCGCtagattggatgaaaaaagccATGAATGCTGATATCCAAGGAAAG
ATCAATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTTCAACTGGTCTGG
TAGAACATGTTCTTGTGGTATGTGGATTACACCATCATTTCAAGTTCAGA
AGTCACGAGTCGACCATTCGTTCCCAAAGTAAatgatGTATGAAATTGAG
CCACATCTTTATCTCTCGAATATCACTGCTGCAAAAAATCAACAATTATT
GCAACAAAACATTATCTCCATAGTCTTAACAGTTGATGCTCAACCTCTAG
GAGGTAGTGGTGgtgaaatagaaaatatttatattGAAATGAATGACGAC
CTGAAAACGAATTTGGTTGAGAAGCTACCTCAATGTATTGATGTGATTGA
AGACTGTGTTATGGAGAAACGCAATATTCTAGTACACTGTCATGCTGGTG
TATCACGAAGTGCATCTGTTGTTATCGCTTACGTCATGAAGTCACGTGGC
TTATCATTACGTCATGCTTCGGATCACGTGAAAAGCAGAAAACAAGACGT
CATGTATGTCGAATCACTAACTCTCCATTTTTTAAGTAGgCCAAACCCTT
GTTTCATGTACCAACTGCAGGTTTTTGAGAAGATGGGATGTAAATTGGAG
AAGGaatctactttttataaagAATTGATGGTGAAGTTCGATCAACAAGA
AAAAATCAGTCAAGCGATAAATGCTGGTGATTATTGGTCCATCAAAGAGC
AGGAAAGTGCTTCAAACAATAACAAAGAGATCAAGAAAAGGATTACTTAT
AAGTGTCGCTCTTGCAGAATCTTGTTGTTCACATCAGAAGCCCTAAGTGA
AGACCACGCGGAAAATGCCAAAGAATGTACTTCACTTTATTTGCTTGAAC
CGCtagattggatgaaaaaagccATGAATGCTGATATCCAAGGAAAGATC
AATTGCTTTAAATGCAGTGGAAAGCTTGGAATGTTCAACTGGTCTGGTAG
AACATGTTCTTGTGGTATGTGGATTACACCATCATTTCAAGTTCAGAAGT
CACGAGTCGACCATTCGTTCCCAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021307XLOC_021307Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036225-proteinTCONS_00036225-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036225-exon-sc0001428-1491911889:37422..37714TCONS_00036225-exon-sc0001428-1491911889:37422..37714Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1510915933:37422..37714TCONS_00036225-exon-sc0001428-1510915933:37422..37714Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1575043694:37422..37714TCONS_00036225-exon-sc0001428-1575043694:37422..37714Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1491911889:38123..38272TCONS_00036225-exon-sc0001428-1491911889:38123..38272Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1510915933:38123..38272TCONS_00036225-exon-sc0001428-1510915933:38123..38272Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1575043694:38123..38272TCONS_00036225-exon-sc0001428-1575043694:38123..38272Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1491911889:38509..38627TCONS_00036225-exon-sc0001428-1491911889:38509..38627Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1510915933:38509..38627TCONS_00036225-exon-sc0001428-1510915933:38509..38627Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1575043694:38509..38627TCONS_00036225-exon-sc0001428-1575043694:38509..38627Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1491911889:38829..38937TCONS_00036225-exon-sc0001428-1491911889:38829..38937Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1510915933:38829..38937TCONS_00036225-exon-sc0001428-1510915933:38829..38937Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1575043694:38829..38937TCONS_00036225-exon-sc0001428-1575043694:38829..38937Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1491911889:39310..39439TCONS_00036225-exon-sc0001428-1491911889:39310..39439Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1510915933:39310..39439TCONS_00036225-exon-sc0001428-1510915933:39310..39439Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1575043694:39310..39439TCONS_00036225-exon-sc0001428-1575043694:39310..39439Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1491911889:39680..39728TCONS_00036225-exon-sc0001428-1491911889:39680..39728Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1510915933:39680..39728TCONS_00036225-exon-sc0001428-1510915933:39680..39728Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1575043694:39680..39728TCONS_00036225-exon-sc0001428-1575043694:39680..39728Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1491911889:40403..40823TCONS_00036225-exon-sc0001428-1491911889:40403..40823Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1510915933:40403..40823TCONS_00036225-exon-sc0001428-1510915933:40403..40823Clytia hemisphaericaexon
TCONS_00036225-exon-sc0001428-1575043694:40403..40823TCONS_00036225-exon-sc0001428-1575043694:40403..40823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:37422..40823 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.157313	0.163751	0.551348	0.117751	0	0	0.355698	0.13883	0	0	0	0.413306	0	0	0	0	0.290658	0.218999	0	0.540811	0	3.93766e-09	0.165956	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020422TYR_PHOSPHATASE_DUAL_dom
IPR029021Prot-tyrosine_phosphatase-like
IPR016278DUSP12
IPR000340Dual-sp_phosphatase_cat-dom
IPR016130Tyr_Pase_AS
IPR000387TYR_PHOSPHATASE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008138protein tyrosine/serine/threonine phosphatase activity
GO:0004725protein tyrosine phosphatase activity
GO:0016791phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
GO:0016311dephosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016311 dephosphorylation
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0016791 phosphatase activity
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
Blast
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BLAST of TCONS_00036225 vs. Swiss-Prot (Human)
Match: DUS12 (Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.833e-47
Identity = 102/324 (31.48%), Postives = 168/324 (51.85%), Query Frame = 1 
Query:   34 NMMYEIEPHLYLSNITAAKXXXXXXXXXXSIVLTVDAQ-PLGGSGGEIENI---YIEMNDDLKTNLVEKLPQCIDVIEDCVMEKRNILVHCHAGVSRSASVVIAYVMKSRGLSLRHASDHVKSRKQDVMYVESLTLHFLSRPNPCFMYQLQVFEKMGCKLEKESTFYKELMV-----KFDQQEKISQAINAGDYWSIKEQESASNNNKEIKKRITYKCRSCRILLFTSEALSEDHAENA---------------------KECTSLYLLEPLDWMKKAMNADIQGKINCFKCSGKLGMFNWSGRTCSCGMWITPSFQVQKSRVD 915
              M E++P LY     A      L++  I+ VLTVD++ P   +G  +E++   ++   D  +T+L+  L +C+  I     E R +LVHCHAGVSRS +++ A++MK+  L    A + ++  K +            ++ N  F +QL++++ MG +++  S  YK+  +     K+ + + + Q + A D  ++         ++ +K  + YKCR CR  LF S ++  DH E +                      +CTS Y +EP+ WM+ A+   + G++ C KCS KLG FNW G  CSCG WITP+FQ+ K+RVD
Sbjct:   25 GQMLEVQPGLYFGGAAAVAEPDHLREAGITAVLTVDSEEPSFKAGPGVEDLWRLFVPALDKPETDLLSHLDRCVAFIGQARAEGRAVLVHCHAGVSRSVAIITAFLMKTDQLPFEKAYEKLQILKPE------------AKMNEGFEWQLKLYQAMGYEVDTSSAIYKQYRLQKVTEKYPELQNLPQELFAVDPTTV---------SQGLKDEVLYKCRKCRRSLFRSSSIL-DHREGSGPIAFAHKRMTPSSMLTTGRQAQCTS-YFIEPVQWMESALLGVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVD 325
The following BLAST results are available for this feature:
BLAST of TCONS_00036225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS121.833e-4731.48Dual specificity protein phosphatase 12 OS=Homo sa... [more]
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