TCONS_00036224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036224
Unique NameTCONS_00036224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036224 ID=TCONS_00036224|Name=TCONS_00036224|organism=Clytia hemisphaerica|type=transcript|length=1256bp
tcttaaatttttatatatttcaggaagaagaaaaacaaaatataatcaaa
acaaaacatgatGTATGAAATTGAGCCACATCTTTATCTCTCGAATATCA
CTGCTGCAAAAAATCAACAATTATTGCAACAAAACATTATCTCCATAGTC
TTAACAGTTGATGCTCAACCTCTAGGAGGTAGTGGTGgtgaaatagaaaa
tatttatattGAAATGAATGACGACCTGAAAACGAATTTGGTTGAGAAGC
TACCTCAATGTATTGATGTGATTGAAGACTGTGTTATGGAGAAACGCAAT
ATTCTAGTACACTGTCATGCTGGTGTATCACGAAGTGCATCTGTTGTTAT
CGCTTACGTCATGAAGTCACGTGGCTTATCATTACGTCATGCTTCGGATC
ACGTGAAAAGCAGAAAACAAGACGTCATgCCAAACCCTTGTTTCATGTAC
CAACTGCAGGTTTTTGAGAAGATGGGATGTAAATTGGAGAAGGaatctac
tttttataaagAATTGATGGTGAAGTTCGATCAACAAGAAAAAATCAGTC
AAGCGATAAATGCTGGTGATTATTGGTCCATCAAAGAGCAGGAAAGTGCT
TCAAACAATAACAAAGAGATCAAGAAAAGGATTACTTATAAGTGTCGCTC
TTGCAGAATCTTGTTGTTCACATCAGAAGCCCTAAGTGAAGACCACGCGG
AAAATGCCAAAGAATGTACTTCACTTTATTTGCTTGAACCGCtagattgg
atgaaaaaagccATGAATGCTGATATCCAAGGAAAGATCAATTGCTTTAA
ATGCAGTGGAAAGCTTGGAATGTTCAACTGGTCTGGTAGAACATGTTCTT
GTGGTATGTGGATTACACCATCATTTCAAGTTCAGAAGTCACGAGTCGAC
CATTCGTTCCCAAAGTAATGTTTTTACAGTCACCAAGTTTAGTGCTACGA
TGAACACGTTCCGTGTACGTCACGCCAAGCCACTTCAAGGTCACCTGTGA
TAGCGTTTGTGGACGAAGGAAATATCCCGTGGGTAACAGTAAGAGTCGAT
CTTTTCGACGTAATATAAAATGTCGAACTTTAAACGTTGTGGTATAAAAG
AGCAGAATTCGTAAACGAGCCAAGGTGCATCAGCTTGGAGTAAGAGTCTT
GTGATAACGTAAGAAGACATTTGTAAATCCTTCCTGTACAAAGGTAAACA
TAGAATGattcaaatcaaatttaaatGTACTTAATTACTTTTTAAGGTCC
TTTTCg
Run BLAST on NCBI

transcript from alignment at sc0001428:37401..40823+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036224 ID=TCONS_00036224|Name=TCONS_00036224|organism=Clytia hemisphaerica|type=transcript|length=3423bp|location=Sequence derived from alignment at sc0001428:37401..40823+ (Clytia hemisphaerica)
tcttaaatttttatatatttcaggaagaagaaaaacaaaatataatcaaa
acaaaacatgatGTATGAAATTGAGCCACATCTTTATCTCTCGAATATCA
CTGCTGCAAAAAATCAACAATTATTGCAACAAAACATTATCTCCATAGTC
TTAACAGTTGATGCTCAACCTCTAGGAGGTAGTGGTGgtgaaatagaaaa
tatttatattGAAATGAATGACGACCTGAAAACGAATTTGGTTGAGAAGC
TACCTCAATGTATTGATGTGATTGAAGACTGTGTTATGGAGAAACGCAAT
ATTCTAGTACACTGGTAAAGACTAACGCATTTTAAATCTAGATGTAGTTT
AAAAACGCCATAGTAAAGACTAATCtccttttattcaaatttgtctTTGT
TCGTTTCAAAGAAGACTGGTGCATTTCGTTTGATGACTCTCTTAATTGCG
ATCTCGTCAAGCTTGTTGAAGTAAATGAAGAAGAATACCTTGTCGGCCAG
TGTCGgcaaaagttgtttttttgcaaaaaattcaaatgagCCTAAAATGG
AAACTTGCATTTCCCTCTCATTAGcttcttttaaaattctttgtcTAGGT
AGCACATAAACCCAAAATTTAATTTCAGCGAAATAATGTTCAATTAActa
attccgtcactttttactGGCGAGTTTTCCACTGATTTCCAACTTTCAAA
ACCTTCCTTTTGTGTTTTTCAGTCATGCTGGTGTATCACGAAGTGCATCT
GTTGTTATCGCTTACGTCATGAAGTCACGTGGCTTATCATTACGTCATGC
TTCGGATCACGTGAAAAGCAGAAAACAAGACGTCATGTATGTCGAATCAC
TAACTCTCCATTTTTTAAGTAGGCTATAATTACCTCGTGAAATTATGCTC
CATCAAGCTACAGTTCCCAAATCATTTCTTTTCGGTTTTAAACAAGATAT
ACGAAAGGAAagtattgatttttcgaagatgaTCGATAGTGAACAAAATG
GTCGGACTGACCATACAACTTTAAAGAACACTTGACAACTTTTGCAACAT
TATTAGAAGCCAGTATTTTTTAGAACCGATTTGCTTTTactcttttttta
actttcaggCCAAACCCTTGTTTCATGTACCAACTGCAGGTTTTTGAGAA
GATGGGATGTAAATTGGAGAAGGaatctactttttataaagAATTGATGG
TGAAGTTCGATCAACAAGAAAAAATCAGTAATGAATGCGTTCTTTCTTGT
CTGTTATTCTTTGTCACAACAATGAAAAATTCCATCAACGATTGAGAATA
TATAGTGAAGAAGGTTAGGATGTCTCATTTTGAACTTTCCAAGAAGTGCA
AATTGCGTACCATGGAGTTATATAGGTTATCCCCCAGTTTTATGACAATC
TATCTTGGTTTAATGAACTCTTTTCTAGGTCAAGCGATAAATGCTGGTGA
TTATTGGTCCATCAAAGAGCAGGAAAGTGCTTCAAACAATAACAAAGAGA
TCAAGAAAAGGATTACTTATAAGTGTCGCTCTTGCAGGTattataataat
ttattttgtttttttataccCATCGGGCTGTTTTTATTGACTACTATTGA
TGACTGGTggcataaaatttcaaaaaatttaatcaaGTCATACattgttt
tccattttttcctTCGTAGAATCTTGTTGTTCACATCAGAAGCCCTAAGT
GAAGACCACGCGGAAAATGCCAAAGAATGTACTTCACTTTATTTGCTTGA
ACCGCtagattggatgaaaaaagccATGAATGCTGATATCCAAGGAAAGG
TACTGACCCTCGTGTTTTTTTCATNNNNNNNNNNNNNNNNNNNCTGGTgg
cataaaatttcaaaaaatttaatcaaGTCATACattgttttccatttttt
cctTCGTAGAATCTTGTTGTTCACATCAGAAGCCCTAAGTGAAGACCACG
CGGAAAATGCCAAAGAATGTACTTCACTTTATTTGCTTGAACCGCtagat
tggatgaaaaaagccATGAATGCTGATATCCAAGGAAAGGTACTGACCCT
CgtgtttatttcattattttgctTTAATTGAGGATAtgatataatatttt
ttccaGACAACAATTTAAGAGGTTGATATATTACAAAGATGGTATTTTCA
GAAGAATGAACGTATTTAACTATCGCAGAAGCAACTAGGGTCTTGATATT
TAAACAGCAAAGTAAAGCTGTCTTTATGTCGGAATTTTTGGAGAAACAAT
GAAACGATCTCTTATTTTCGCTTTTTTAGATCAATTGCTTTAAATGCAGT
GGAAAGCTTGGAATGTTCAACTGGTCTGGTAGGTTAAACTTTAGGTTAAA
CTTTCAATTTAGCATTTTCAAGGGTGTAGAACCTCAAAATCCAGCAGCCG
GAAAAAGAGCTGGCcgcattacttcgaataaacgccccgggcgtttgtta
aattttttggattttaggaggggcgtttaaaatagggggcgtttattcga
agcaATACAGTATACAgtcttttgacatttttcggctaactttgaaaaat
tgacttgCATTCATAAAGCGGACCACTGCTGAACCGAAATAATCATACCG
GGGTGTACCAGAAATAAATGACCATCCTTGAAGTAGAATTTTTTTAGCtc
catttgaagaaaaattaaagtatttctggcacacccggtattttgatcaa
attttagaTGTTTTCACCTATCCAGCATGAAAACTATCCCAAAACATAAT
CTATAATAACCTAAAATAAATGCCACAAGGTAGTACTTAGATATTGAGTT
AAATCGCCAACGAATGGAAAATAGTTGTTGTTTCCTGCGCTTGTAACTTG
CTTTTTTTAAAACGTCAAGTTCCAAATATACAAATATAAAAAAGCCCGTC
TTGTTTGAATAAATTAAATCAATTCGATTGTGATGATAATCAATCATGAG
ATACAAGTATTTTGCTCAAAAGTACAATTGGACCATTTTCTTTCACTACT
AGGTAGAACATGTTCTTGTGGTATGTGGATTACACCATCATTTCAAGTTC
AGAAGTCACGAGTCGACCATTCGTTCCCAAAGTAATGTTTTTACAGTCAC
CAAGTTTAGTGCTACGATGAACACGTTCCGTGTACGTCACGCCAAGCCAC
TTCAAGGTCACCTGTGATAGCGTTTGTGGACGAAGGAAATATCCCGTGGG
TAACAGTAAGAGTCGATCTTTTCGACGTAATATAAAATGTCGAACTTTAA
ACGTTGTGGTATAAAAGAGCAGAATTCGTAAACGAGCCAAGGTGCATCAG
CTTGGAGTAAGAGTCTTGTGATAACGTAAGAAGACATTTGTAAATCCTTC
CTGTACAAAGGTAAACATAGAATGattcaaatcaaatttaaatGTACTTA
ATTACTTTTTAAGGTCCTTTTCg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021307XLOC_021307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036224-exon-sc0001428-1491911889:37401..37714TCONS_00036224-exon-sc0001428-1491911889:37401..37714Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1510915933:37401..37714TCONS_00036224-exon-sc0001428-1510915933:37401..37714Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1575043694:37401..37714TCONS_00036224-exon-sc0001428-1575043694:37401..37714Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1491911889:38123..38236TCONS_00036224-exon-sc0001428-1491911889:38123..38236Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1510915933:38123..38236TCONS_00036224-exon-sc0001428-1510915933:38123..38236Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1575043694:38123..38236TCONS_00036224-exon-sc0001428-1575043694:38123..38236Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1491911889:38509..38627TCONS_00036224-exon-sc0001428-1491911889:38509..38627Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1510915933:38509..38627TCONS_00036224-exon-sc0001428-1510915933:38509..38627Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1575043694:38509..38627TCONS_00036224-exon-sc0001428-1575043694:38509..38627Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1491911889:38829..38937TCONS_00036224-exon-sc0001428-1491911889:38829..38937Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1510915933:38829..38937TCONS_00036224-exon-sc0001428-1510915933:38829..38937Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1575043694:38829..38937TCONS_00036224-exon-sc0001428-1575043694:38829..38937Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1491911889:39070..39199TCONS_00036224-exon-sc0001428-1491911889:39070..39199Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1510915933:39070..39199TCONS_00036224-exon-sc0001428-1510915933:39070..39199Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1575043694:39070..39199TCONS_00036224-exon-sc0001428-1575043694:39070..39199Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1491911889:39680..39728TCONS_00036224-exon-sc0001428-1491911889:39680..39728Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1510915933:39680..39728TCONS_00036224-exon-sc0001428-1510915933:39680..39728Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1575043694:39680..39728TCONS_00036224-exon-sc0001428-1575043694:39680..39728Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1491911889:40403..40823TCONS_00036224-exon-sc0001428-1491911889:40403..40823Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1510915933:40403..40823TCONS_00036224-exon-sc0001428-1510915933:40403..40823Clytia hemisphaericaexon
TCONS_00036224-exon-sc0001428-1575043694:40403..40823TCONS_00036224-exon-sc0001428-1575043694:40403..40823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:37401..40823 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.38774	5.35302	2.24444	1.6891	4.18118	3.41528	2.75274	3.37648	4.40643	2.79417	2.83224	3.21613	2.19165	2.18826	1.7798	1.54865	1.79383	2.78976	0.612351	0.885786	2.12954	1.40707	4.44011	3.9031	14.1312	11.9324	1.16158	0.550676	2.01213	2.4907
Blast
[Close]
BLAST of TCONS_00036224 vs. Swiss-Prot (Human)
Match: DUS12 (Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.744e-50
Identity = 102/312 (32.69%), Postives = 166/312 (53.21%), Query Frame = 1 
Query:   55 NMMYEIEPHLYLSNITAAKXXXXXXXXXXSIVLTVDAQ-PLGGSGGEIENI---YIEMNDDLKTNLVEKLPQCIDVIEDCVMEKRNILVHCHAGVSRSASVVIAYVMKSRGLSLRHASDHVKSRKQDVMPNPCFMYQLQVFEKMGCKLEKESTFYKELMV-----KFDQQEKISQAINAGDYWSIKEQESASNNNKEIKKRITYKCRSCRILLFTSEALSEDHAENA---------------------KECTSLYLLEPLDWMKKAMNADIQGKINCFKCSGKLGMFNWSGRTCSCGMWITPSFQVQKSRVD 900
              M E++P LY     A      L++  I+ VLTVD++ P   +G  +E++   ++   D  +T+L+  L +C+  I     E R +LVHCHAGVSRS +++ A++MK+  L    A + ++  K +   N  F +QL++++ MG +++  S  YK+  +     K+ + + + Q + A D  ++         ++ +K  + YKCR CR  LF S ++  DH E +                      +CTS Y +EP+ WM+ A+   + G++ C KCS KLG FNW G  CSCG WITP+FQ+ K+RVD
Sbjct:   25 GQMLEVQPGLYFGGAAAVAEPDHLREAGITAVLTVDSEEPSFKAGPGVEDLWRLFVPALDKPETDLLSHLDRCVAFIGQARAEGRAVLVHCHAGVSRSVAIITAFLMKTDQLPFEKAYEKLQILKPEAKMNEGFEWQLKLYQAMGYEVDTSSAIYKQYRLQKVTEKYPELQNLPQELFAVDPTTV---------SQGLKDEVLYKCRKCRRSLFRSSSIL-DHREGSGPIAFAHKRMTPSSMLTTGRQAQCTS-YFIEPVQWMESALLGVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVD 325
The following BLAST results are available for this feature:
BLAST of TCONS_00036224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS123.744e-5032.69Dual specificity protein phosphatase 12 OS=Homo sa... [more]
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