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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036196 ID=TCONS_00036196|Name=TCONS_00036196|organism=Clytia hemisphaerica|type=transcript|length=355bp
GAATGTACCAGTTCGCACACCACTGAAACCGCAACAACCTCCAAAAGATA
AGAACCCAATTCGTACGACATCAAAGATATACCTGTGGCGGAGGTGCAAG
AGAAATTGGTTGGGATTAAGAACTGTCAGACTAAGGAGGAGCTTGACGAC
TGTTTTGCTTCATTTGATGAAAGATTTGAAGCTGGCTACAACAAAATGGT
CCTCAATATGGATGAGCGAGAGCATTTTTGTCGATTAATATCTCgttttt
ttattgttgaaaGAAATCACGCTGAGATTTCGCAGCTGTTGAAAGGAGTT
CACCCTGACCTCCTCTCACTAATGAGAAGATTCCCTGAAGAAGGAATCAA
AGAAA Run BLAST on NCBI transcript from alignment at sc0001424:28501..32024+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036196 ID=TCONS_00036196|Name=TCONS_00036196|organism=Clytia hemisphaerica|type=transcript|length=3524bp|location=Sequence derived from alignment at sc0001424:28501..32024+ (Clytia hemisphaerica)
GAATGTACCAGTTCGCACACCACTGAAACCGCAACAACCTCCAAAAGATA
AGGTACATTTTAAGGATGTAATCCTTGTCACTTCACAAAAAGTACGAACT
GTTCCAAAAGGAGCCTTACTTGAGGATTTGCACGATTGTGGTTTTGTAAT
CACTGGTTTCGAATTGCACACCAATGACACAGAACGTGATCTGACGATTA
AGATGAACAATTTgtttaaagaaatatttgattNCAATGACACAGAACAT
GATCTGACGATTAAGATGAACAATTTgtttaaagaaatatttgattTACG
TCCTGAAACTATCAGCAACTTTGAATTTGTTAGAGCAATCGGAAAAGGAC
TTGTTAGAATTAAAACCACAGGACCCTTAAATGTAGCCTAGTTAACtgag
cccgtattcacaaggctaggacacacggcttatggcgatatagcgttttc
ggcgcttgaagattttttatatttacggattttaagtttgccttggaata
ctggctTAGGGAAAGGGCGCGTTCATAATATGAACGCAGGATTCGGTGAG
CTTCTGATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtttataat
tattttatcagaaaacgagtagaagaggatgagactcattgaatgcaaga
tctttcttcgattatattatgatgtgagactattaccaCGTCTATTACCA
TGAGAGAGCCGAGAGATATATTTCATTTGGAATtctgtatcagaaaaagt
tttcaagacctgatcccgacctgatagtgcatctcttgtttttgggaaga
attgaactgatgaagaaaaaagaatgctattcgtcgtaaagacagcaaaa
gttgcttgtttccagaatggcaaataataaagtaaagatttgtgattgaa
cattgactatcgagagagtacttgtacagatcctatgctgtagttctgta
ttctgattggattgcatgacatgatattttattatactgtaatggataga
tgaAAGACAGTTCTTGGTCTTTGACTGGTTttggtttcttgttgttttat
gaatttgagactttatgctccattttacagacaatgacatctttcatttt
cgaagaacataaaattgtcggtgcttattttcagtgtCAGCTATATGAAT
TCAAGACtcaggaaaatgtttttttttgggggggggggattaattacatt
gttttgtatacggtaatttagcctgctagtctaaagtaatttttattcat
tttgttgaaggttatttttatgatgagctttgtaaaaatcatacaaaata
attttatgtcaaattgtcaaatcacaaaattatcactcaaggaacgaatt
tgtctcttgttgacttttccataaaatacgaacataactttttgaaaaaa
atgaacaaatttttccttcactctccatcggcacactttacaatagaatt
tcattttatattttacaaaaggagcgcataaactgtaagacggagagttt
gtttatctgatcttacaataagagccaatcagaagatagaaaaaaagata
aaataaaaaaattctaaataatgttttgatattgtgttctgtgtgtggtg
tgatttcatatttttgatacgaaacgaattaagtcaacgacgaataatta
tgcaaattatgtgagtttacgttatccctcgccgcgaaatttgaattgtc
gttgttgtcgttgttgataagctaccgagtttactgtccctaagctagtt
attcagtcacaacttaaccatcagatttatccaagtgactgaatcaaact
agcttagatttctaggctaNGACTTGTTAAAATTAAAACCACAGGACCCT
TAAATGGAAGTAAACTTCACTCTATAACTAAAGGTAAAAATGAACCGATA
TACATTAGATCAAAAACCGACTTTAGACACTTGCTTACTACAAAAGATAA
GCTCTGGCCTTCAGAGATTAGTAGTTCAAGTGAAAGTGATGAATATGAAG
ATCCTGTACGCAGAAAGCAGAAGCTGGAATCATGTGAATGTCCAATTTGT
CAGAAAGTTTTCCCATTAGACACTATCAGTGCCAATGCAAGTAGTTGTGG
TGAGGTCTTCGTAGCAAAATCTGCCACCAAAGGCATGCATACATCAACTG
CTACAAGACCCCAAACATCAACTGCTACAAGACCCCAAACACCGATTGAA
ACAAAACCTCCAACATTGACTGAAACAAGACCTTCTGCATCGACTGGATC
TGGATCACTCCGTACTCCACCAGCTGCTATTGTCCCTAAGACTTTAACCT
TTGAAAGTGAGCTGAAAAAACtgcaaacaatttttcaatgtaGAACGGAG
AAAAATCTCAACTTGAGACTTAAGAATGTGTATGAAGATATGGCCAAAAA
GTTTAGACtattattcaaaacaaaactttcacCCGTCACAGTCACCTTTT
TCGAGGAGGTAGGAGTCGACGATGGTGGGTTGACACGGGAAGCCTTCTCC
AAAATTTTTGCTACAGCTAATCGTGAGGTTCTCTGTTGAATGGAAAATCG
ATTCACATTAATTCACGACAAGATAAAACTGGAGGCAGgagattttttca
tatttggcCAGATACTCAGCATGGCTTTGCTGATGGGTGCTTCTGGCCCA
CATGATCTTTCTAAACCATTCGCAGAACACCTCCTTTCTTTTAAAGAACC
CAATTCGTACGACATCAAAGATATACCTGTGGCGGAGGTGCAAGAGAAAT
TGGTTGGGATTAAGAACTGTCAGACTAAGGAGGAGCTTGACGACTGTTTT
GCTTCATTTGATGAAAGATTTGAAGCTGGGTAAGTTAACTATTACTACAG
TGCCTCACCTAAAAACTTCTAGAACTTTTCTCTTCTCACTGGTCAATGGG
CAACTAAATTTACTCTTCAGGCTCATTTTCAGTGAGGATCTTTAAACAAA
CAGAGGGGCTACTTTCCACCCCACCTTACCATAGCTAGATGGTGGGGGAa
acgattttccaaaaaagtcgAAAGGGTGGGTGTACAGATATTTCTTGTTC
GTTTTTCGTTTGCTCATTCGTTCCTTTTTCAGAATCTTTTCCATTAATGT
CTATGTTTTCTCTCATTTggctaactttcatcatcaggtaggtccaatca
gcatgttgcttgttgttATTAATaatggatttttaaatttttctcttgTT
TCAGCTACAACAAAATGGTCCTCAATATGGATGAGCGAGAGCATTTTTGT
CGATTAATATCTCgtttttttattgttgaaaGAAATCACGCTGAGATTTC
GCAGCTGTTGAAAGGAGTTCACCCTGACCTCCTCTCACTAATGAGAAGAT
TCCCTGAAGAAGGAATCAAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036196-exon-sc0001424-1491911889:28501..28552 | TCONS_00036196-exon-sc0001424-1491911889:28501..28552 | Clytia hemisphaerica | exon |
| TCONS_00036196-exon-sc0001424-1510915933:28501..28552 | TCONS_00036196-exon-sc0001424-1510915933:28501..28552 | Clytia hemisphaerica | exon |
| TCONS_00036196-exon-sc0001424-1575043694:28501..28552 | TCONS_00036196-exon-sc0001424-1575043694:28501..28552 | Clytia hemisphaerica | exon |
| TCONS_00036196-exon-sc0001424-1491911889:31347..31479 | TCONS_00036196-exon-sc0001424-1491911889:31347..31479 | Clytia hemisphaerica | exon |
| TCONS_00036196-exon-sc0001424-1510915933:31347..31479 | TCONS_00036196-exon-sc0001424-1510915933:31347..31479 | Clytia hemisphaerica | exon |
| TCONS_00036196-exon-sc0001424-1575043694:31347..31479 | TCONS_00036196-exon-sc0001424-1575043694:31347..31479 | Clytia hemisphaerica | exon |
| TCONS_00036196-exon-sc0001424-1491911889:31855..32024 | TCONS_00036196-exon-sc0001424-1491911889:31855..32024 | Clytia hemisphaerica | exon |
| TCONS_00036196-exon-sc0001424-1510915933:31855..32024 | TCONS_00036196-exon-sc0001424-1510915933:31855..32024 | Clytia hemisphaerica | exon |
| TCONS_00036196-exon-sc0001424-1575043694:31855..32024 | TCONS_00036196-exon-sc0001424-1575043694:31855..32024 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001424 | supercontig | sc0001424:28501..32024 + |
Blast
The following BLAST results are available for this feature:
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