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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036188 ID=TCONS_00036188|Name=TCONS_00036188|organism=Clytia hemisphaerica|type=transcript|length=2729bpRun BLAST on NCBI protein sequence of TCONS_00036188-protein >TCONS_00036188-protein ID=TCONS_00036188-protein|Name=TCONS_00036188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=909bp SAGTNAGVMQHVGDAFSNTGNVGIDGSDISLLGIAPWGALSGRETLVNPNRun BLAST on NCBI transcript from alignment at sc0001423:5362..23780- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036188 ID=TCONS_00036188|Name=TCONS_00036188|organism=Clytia hemisphaerica|type=transcript|length=18419bp|location=Sequence derived from alignment at sc0001423:5362..23780- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001423:5362..23780- >TCONS_00036188 ID=TCONS_00036188|Name=TCONS_00036188|organism=Clytia hemisphaerica|type=CDS|length=46359bp|location=Sequence derived from alignment at sc0001423:5362..23780- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00036188 vs. Swiss-Prot (Human)
Match: TRPM2 (Transient receptor potential cation channel subfamily M member 2 OS=Homo sapiens GN=TRPM2 PE=1 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 3.404e-38 Identity = 106/329 (32.22%), Postives = 176/329 (53.50%), Query Frame = 3
Query: 1080 QLKLALAWNRIDVAKSEIFASNLQENKFESEWLYESMLAAVVDNKFDFVDLFLREGLNLKSFLTLPRLLTLYREVNPNSPFGSFIAELCKWKHLERD---QNMGKIDMSNIAHVMEELMGDRFESRYTKQRQ-----------YTIGNFXXXXXXXXXXXXXXXFT-----------WAILCNRRELAKLLWTQCEDSIXXXXXXXXXXXXXXERVADDKNVVDTIGDLIDHANTYEQLAVGVLDECRKENDERAQNIVISEQENFGQLSNLDIAVTADNQEFVAHPSCQTLLSRFWMGSLYINTSYWRIVPCIF-LPFLIQPLITFHQ 1988
QLKLA+AWNR+D+A+SEIF + E +++ L+ +M AA++ NK +FV LFL G+ LK F+T LL LY ++P+ F S + ++ + ER ++ M ++A V+ EL+GD + Y + R + N L + T WAI+ NRRELA ++W Q +D IA AL SK+L + ++ ++ D+ +++ A YE A+GV EC ++++ERAQ ++ E +G+ + L +A+ A + +FV+H Q L++ W G L ++ WR+ C+ P L+ LI+F +
Sbjct: 455 QLKLAVAWNRVDIARSEIF---MDEWQWKPSDLHPTMTAALISNKPEFVKLFLENGVQLKEFVTWDTLLYLYENLDPSCLFHSKLQKVLV-EDPERPACAPAAPRLQMHHVAQVLRELLGDFTQPLYPRPRHNDRLRLLLPVPHVKLNVQGVSLRSLYKRSSGHVTFTMDPIRDLLIWAIVQNRRELAGIIWAQSQDCIAAALACSKIL----KELSKEEEDTDSSEEMLALAEEYEHRAIGVFTECYRKDEERAQKLLTRVSEAWGKTTCLQLALEAKDMKFVSHGGIQAFLTKVWWGQLSVDNGLWRVTLCMLAFPLLLTGLISFRE 775 HSP 2 Score: 143.665 bits (361), Expect = 1.099e-34 Identity = 88/249 (35.34%), Postives = 143/249 (57.43%), Query Frame = 3
Query: 3 SAGTNAGVMQHVGDAFSN-TGNVGIDGSDISLLGIAPWGALSGRETLVNPNIGKKHAPAVQYVITNKKRPGL---DKNHTHFILVDDGTSGKFGTEINFRSDFEALVAKQNVQTSSSAGKVDVPVVILCLEGGPGTIKTMAAAVNNKTPLVVIGGSGRAADVVSHAYDLLDSDDLGVSFIKPDYIDTVKENIRQSLKIQDNEDLIEVLFKQLKDILKDITLVTVFMMEDDSSQSDLDLAVLQALLKANN 737
+ G++ GVM+ VG+A + + + ++ +G+A WG + RE L++P PA +Y++ + L D NH+HFILVDDGT G++G EI R+ E +++Q + A + +P+V + LEGGPGT+ T+ A N TP VV+ GSGR ADV++ +L S D+ +S I+ + + + ++ E I K+++DI++ L+TVF E Q D+D+A+LQALLKA+
Sbjct: 207 TGGSHTGVMKQVGEAVRDFSLSSSYKEGELITIGVATWGTVHRREGLIHPT---GSFPA-EYILDEDGQGNLTCLDSNHSHFILVDDGTHGQYGVEIPLRTRLEKFISEQTKERGGVA--IKIPIVCVVLEGGPGTLHTIDNATTNGTPCVVVEGSGRVADVIAQVANLPVS-DITISLIQ-QKLSVFFQEMFETF----TESRIVEWTKKIQDIVRRRQLLTVF-REGKDGQQDVDVAILQALLKASR 442 The following BLAST results are available for this feature:
BLAST of TCONS_00036188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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