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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036176 ID=TCONS_00036176|Name=TCONS_00036176|organism=Clytia hemisphaerica|type=transcript|length=3422bp
gttccactttgacgattttcgaaaaatagaagcctttcaagtgttttgac
gcaaattcgattattgtgctactgcaggagcttcgaaaattaaaagtgac
gtcaaaaaatcgaatgtttagagcccgaaaacccgggctcaaaacattcg
aaaaagtcgcaaagtggaatagacgttatatgcgtaaaaaaacgcgggtg
acgtctagtatagatTATCgtgaatagagcttttcaaaataatttgcgaG
AAAATACTTAACttgattaactttcgcgaattcccTAGAATTTGCTAGAA
TGGcgaatgtttttttcttcaaaattttctagtTTAGTGATCTCTGTTAG
TAAGTTCCCGCTATAATATTTCTTAGTTTGAGCACTAGTTATActagaaa
aattataaaagaaaaattgaaaactcaTAAAATAATATTAACAACGCTCT
TGatgagaaataaagaaacaaCACTGTGGAGACAACCATTCTCAATTCAG
ACGTGAAATTtatttaacaaaacaattccaCGAAATTTCTTCAACAAATT
TGAGACAGAAATGCCGTTTTTTGAATTGGCTGAGACGGGAATTTGAACAC
TGCAAGAGGCATTTCCTTCGCGTTCTTAACTAACGTTTTAAAGCAAAATA
TAATTATCAAAGATCAAagtttaaatctctttgaaaatgccctttaaaag
aaatttagaaaagaCATATTTCAggaaaattgcttgaaaattatgaaaaa
agattaaagcgctgaaaataaaatataaatattttaattaaatCACCAAA
AACTAAAATGAATTATGATTAAATTGAATTTATctaaatagtgttttttt
tccatttcttaaTTGTACTAAGAGTATAACAACTCGACTCATGGCCTTGA
AATTAGCCAGATTTTAATCAGTTTTTGATCGTCGTTAGTAAGCACTTCAT
GTGTATGGTTCTCTTAACATAATGAAAAGGATAGTGAATTTTTGTTCCCT
AACATTGGGAAAATTAAAACGAACTAAACGTagtaattaagaaaaaaaag
gtaaatttaattgtataaaaaattaattttcataaattcaaaatattaaa
atcaaaataaagaaaaaaatatcaccTAGTGTATAAAAACAAAGCTCTGA
AGCCgatctctttttttctttcaatttttcggtCATTATTGCGGGATATT
TGGTAATATGCGCTTTTTACGTGGCTTCTCGCTCGGAGCCGCACGGGAAT
TCGGAACAAATGGGGCACCACCGAATGGATCATCCTTGGCGGAAAAAGGG
TCAGAAGCTCGGTTATTTTTACCAGCCATAGGTGCCATATTGAATGGATC
TCCATGACTACCACTAGACGGTTTACTAGTCTCTTCAATTctctttttat
gttttgaaacTTTAATGGGCGCCATTTCAAAGGGGTCGTTCGAGCTTTGA
TTGGCAATAGGCGGCTTTGTTTGGGCGTTAGTGGGCGGTGTTTGTTTGGC
AGCAGGTGGGTTTCTTGAAGTGATGAAATCATCAAAAGGGTTAGCAGCCA
CAGGCAGTGATTGTTGAACATTCACAACCTGAGGATTAGTCTCTTTTTTC
TTTGGTTGGTCGTTGCGCGGCCTATGATGTTTCTCCTTTTTAGCTTGACG
TCGTTTAATTTTACCGTCAGCCGTAGTCTTGGAATGTGAAGTGCGCGTTT
GTTGCTTAACAGGCGGAGCGAATGGTGCAGCATCAAAGATATCACGCTGT
GTCTTAGGTGCAGTTGAAGCACTACTAGACCACGCCTTTCCAACCACTTC
AGCTGTTTGATGTAGCCTGCGTTCCTCAATATTCACAATCTCAGAGCCTG
ATTCCTGATGCGCCATTTCTGAATTACAATCTTGATACGCATGCGTTGTA
GAACCTGTGACTTCATAATTTTCGCCATCACTAGATGAATTCGAATGATC
GCTACTACTGCAGGACGAGGTCCGCTGGTAAACGTATTTCCGCCCTTCTT
CTGGCGGCGACATGGCGGGTGATAACAACGGAGAAGCGTCATTCCGTGAC
ACATCTAATGAAGTGCGTGCATTCTCCACCGGAGAGACGGTCTCCTCGTT
CACTCCTAACGTATCCAGCATAACTCCCAAAGTATCCAATTCTTTTTGTA
ACTGGTCGTATTGTTGATCCTCCTCATCAAGAGCTAATAATACCCCCGTC
TCAATCTTTTTTTCCTGGTGAAATGGATTAGGGCCATCAGTCGAAACCAG
GGGTTCATTCGTATCGATCACTAACGGTTTCGTTTTCTCGCTGTTTCTTG
CTTCAGAAGGGATAGGAGATAATCGAGGCGATGGCTGTTTATTTTGACTC
GATTGCCCGCTTATACCGAGCTTATCGACTGCACGATTGGCGGCTAGTTT
TGTAAAGGTATCTGAACGCGATCTATTATGGGTTTTCTTCTTTGCGTTGA
ACGGATTAATTGCCGTATCATCCGACGCACGACGTCCGGCAAACGGATTC
GATAGATCCGGCGTCGAATGACTAAAATCGTCATCGAACGCGTTAGGAGA
GGAGCGGCCGCTCGATATTTGTTGCAGTTTATTACTCGTTATTCCGTTAC
TCACAGACGGCGGTTCAACGCTATGACATAGCCGCGGATCGACGGGATCT
TGGCGTGGATTAAAATCGTCGTccaacattttttgtttttggaccATGAT
CCTTTGCATTCGTATTTTAGCTTGTTCCTCTTCTTCCTTCAATTTTTGTA
GACGGTTATATTGTTCTTGTCTCTGTCTTATATATTCCTCTTTCTGGTTT
TGACGAGCCGCCATTTCCTTTTCTTGTTGCAGTGCTTGTTGTTGCTGTAG
TGCCTGTTGTTGCCTAGCAGCAGCCTCTTGTTGTCTAGCAGCCTCCTGTT
GCCTAGCAGCTTCTTGTTGCCTAGCAGCTTCTTGTTGCCTAGCAGCTTCT
TGTTGCCTGGCAGCTATTTCCATTTCCTGTTGTTTGCGAGCCGCCATTTC
CatttcttgttgttgttgttgcctTAGCAACATCTCTTGTTGCATAATCT
GTTGTTGCTGAAGTTGTTGATAATAGTTCatttgttgttgctgttgtagG
TACTGTTGTTGCATGGCGTATTCTTGGGGCATCATTGAATGGGGCACCAT
ACCGCCCATAACGGGTGGCTGTTGTTGCTGCTGCATCATGTATTGTTGAT
ATTGGGGCGCCATTTGTGTATTATGATTGTATTGAGGTTCCGTAGGTGCA
TTCGACGTTTGTTTGAAAGCGGCAGCACTATTTTCCTCTTGACCGTCAAT
CACCTGGTTGTTTCCTTTCGGACGTTGTCGTGGCGCTAACGACGTCGTTA
CAGGCCTTTCTCGTGGTGCCACGGACGTCATGACAGGGCCGGCAGGTGAT
TGGTTTGTTGAAGATGATTGTG Run BLAST on NCBI transcript from alignment at sc0001421:54617..58101+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036176 ID=TCONS_00036176|Name=TCONS_00036176|organism=Clytia hemisphaerica|type=transcript|length=3485bp|location=Sequence derived from alignment at sc0001421:54617..58101+ (Clytia hemisphaerica)
gttccactttgacgattttcgaaaaatagaagcctttcaagtgttttgac
gcaaattcgattattgtgctactgcaggagcttcgaaaattaaaagtgac
gtcaaaaaatcgaatgtttagagcccgaaaacccgggctcaaaacattcg
aaaaagtcgcaaagtggaatagacgttatatgcgtaaaaaaacgcgggtg
acgtctagtatagatTATCgtgaatagagcttttcaaaataatttgcgaG
AAAATACTTAACttgattaactttcgcgaattcccTAGAATTTGCTAGAA
TGGcgaatgtttttttcttcaaaattttctagtTTAGTGATCTCTGTTAG
TAAGTTCCCGCTATAATATTTCTTAGTTTGAGCACTAGTTATActagaaa
aattataaaagaaaaattgaaaactcaTAAAATAATATTAACAACGCTCT
TGatgagaaataaagaaacaaCACTGTGGAGACAACCATTCTCAATTCAG
ACGTGAAATTtatttaacaaaacaattccaCGAAATTTCTTCAACAAATT
TGAGACAGAAATGCCGTTTTTTGAATTGGCTGAGACGGGAATTTGAACAC
TGCAAGAGGCATTTCCTTCGCGTTCTTAACTAACGTTTTAAAGCAAAATA
TAATTATCAAAGATCAAagtttaaatctctttgaaaatgccctttaaaag
aaatttagaaaagaCATATTTCAggaaaattgcttgaaaattatgaaaaa
agattaaagcgctgaaaataaaatataaatattttaattaaatCACCAAA
AACTAAAATGAATTATGATTAAATTGAATTTATctaaatagtgttttttt
tccatttcttaaTTGTACTAAGAGTATAACAACTCGACTCATGGCCTTGA
AATTAGCCAGATTTTAATCAGTTTTTGATCGTCGTTAGTAAGCACTTCAT
GTGTATGGTTCTCTTAACATAATGAAAAGGATAGTGAATTTTTGTTCCCT
AACATTGGGAAAATTAAAACGAACTAAACGTagtaattaagaaaaaaaag
gtaaatttaattgtataaaaaattaattttcataaattcaaaatattaaa
atcaaaataaagaaaaaaatatcaccTAGTGTATAAAAACAAAGCTCTGA
AGCCgatctctttttttctttcaatttttcggtCATTATTGCGGGATATT
TGGTAATATGCGCTTTTTACGTGGCTTCTCGCTCGGAGCCGCACGGGAAT
TCGGAACAAATGGGGCACCACCGAATGGATCATCCTTGGCGGAAAAAGGG
TCAGAAGCTCGGTTATTTTTACCAGCCATAGGTGCCATATTGAATGGATC
TCCATGACTACCACTAGACGGTTTACTAGTCTCTTCAATTctctttttat
gttttgaaacTTTAATGGGCGCCATTTCAAAGGGGTCGTTCGAGCTTTGA
TTGGCAATAGGCGGCTTTGTTTGGGCGTTAGTGGGCGGTGTTTGTTTGGC
AGCAGGTGGGTTTCTTGAAGCGATGANCTTTGTTTGGGCGTTAGTAGGCG
GTGTTTGTTTGGCAGCAGGTGGGTTTCTTGAAGTGATGAAATCATCAAAA
GGGTTAGCAGCCACAGGCAGTGATTGTTGAACATTCACAACCTGAGGATT
AGTCTCTTTTTTCTTTGGTTGGTCGTTGCGCGGCCTATGATGTTTCTCCT
TTTTAGCTTGACGTCGTTTAATTTTACCGTCAGCCGTAGTCTTGGAATGT
GAAGTGCGCGTTTGTTGCTTAACAGGCGGAGCGAATGGTGCAGCATCAAA
GATATCACGCTGTGTCTTAGGTGCAGTTGAAGCACTACTAGACCACGCCT
TTCCAACCACTTCAGCTGTTTGATGTAGCCTGCGTTCCTCAATATTCACA
ATCTCAGAGCCTGATTCCTGATGCGCCATTTCTGAATTACAATCTTGATA
CGCATGCGTTGTAGAACCTGTGACTTCATAATTTTCGCCATCACTAGATG
AATTCGAATGATCGCTACTACTGCAGGACGAGGTCCGCTGGTAAACGTAT
TTCCGCCCTTCTTCTGGCGGCGACATGGCGGGTGATAACAACGGAGAAGC
GTCATTCCGTGACACATCTAATGAAGTGCGTGCATTCTCCACCGGAGAGA
CGGTCTCCTCGTTCACTCCTAACGTATCCAGCATAACTCCCAAAGTATCC
AATTCTTTTTGTAACTGGTCGTATTGTTGATCCTCCTCATCAAGAGCTAA
TAATACCCCCGTCTCAATCTTTTTTTCCTGGTGAAATGGATTAGGGCCAT
CAGTCGAAACCAGGGGTTCATTCGTATCGATCACTAACGGTTTCGTTTTC
TCGCTGTTTCTTGCTTCAGAAGGGATAGGAGATAATCGAGGCGATGGCTG
TTTATTTTGACTCGATTGCCCGCTTATACCGAGCTTATCGACTGCACGAT
TGGCGGCTAGTTTTGTAAAGGTATCTGAACGCGATCTATTATGGGTTTTC
TTCTTTGCGTTGAACGGATTAATTGCCGTATCATCCGACGCACGACGTCC
GGCAAACGGATTCGATAGATCCGGCGTCGAATGACTAAAATCGTCATCGA
ACGCGTTAGGAGAGGAGCGGCCGCTCGATATTTGTTGCAGTTTATTACTC
GTTATTCCGTTACTCACAGACGGCGGTTCAACGCTATGACATAGCCGCGG
ATCGACGGGATCTTGGCGTGGATTAAAATCGTCGTccaacattttttgtt
tttggaccATGATCCTTTGCATTCGTATTTTAGCTTGTTCCTCTTCTTCC
TTCAATTTTTGTAGACGGTTATATTGTTCTTGTCTCTGTCTTATATATTC
CTCTTTCTGGTTTTGACGAGCCGCCATTTCCTTTTCTTGTTGCAGTGCTT
GTTGTTGCTGTAGTGCCTGTTGTTGCCTAGCAGCAGCCTCTTGTTGTCTA
GCAGCCTCCTGTTGCCTAGCAGCTTCTTGTTGCCTAGCAGCTTCTTGTTG
CCTAGCAGCTTCTTGTTGCCTGGCAGCTATTTCCATTTCCTGTTGTTTGC
GAGCCGCCATTTCCatttcttgttgttgttgttgcctTAGCAACATCTCT
TGTTGCATAATCTGTTGTTGCTGAAGTTGTTGATAATAGTTCatttgttg
ttgctgttgtagGTACTGTTGTTGCATGGCGTATTCTTGGGGCATCATTG
AATGGGGCACCATACCGCCCATAACGGGTGGCTGTTGTTGCTGCTGCATC
ATGTATTGTTGATATTGGGGCGCCATTTGTGTATTATGATTGTATTGAGG
TTCCGTAGGTGCATTCGACGTTTGTTTGAAAGCGGCAGCACTATTTTCCT
CTTGACCGTCAATCACCTGGTTGTTTCCTTTCGGACGTTGTCGTGGCGCT
AACGACGTCGTTACAGGCCTTTCTCGTGGTGCCACGGACGTCATGACAGG
GCCGGCAGGTGATTGGTTTGTTGAAGATGATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036176-exon-sc0001421-1491911889:54617..56100 | TCONS_00036176-exon-sc0001421-1491911889:54617..56100 | Clytia hemisphaerica | exon |
| TCONS_00036176-exon-sc0001421-1510915933:54617..56100 | TCONS_00036176-exon-sc0001421-1510915933:54617..56100 | Clytia hemisphaerica | exon |
| TCONS_00036176-exon-sc0001421-1575043694:54617..56100 | TCONS_00036176-exon-sc0001421-1575043694:54617..56100 | Clytia hemisphaerica | exon |
| TCONS_00036176-exon-sc0001421-1491911889:56164..58101 | TCONS_00036176-exon-sc0001421-1491911889:56164..58101 | Clytia hemisphaerica | exon |
| TCONS_00036176-exon-sc0001421-1510915933:56164..58101 | TCONS_00036176-exon-sc0001421-1510915933:56164..58101 | Clytia hemisphaerica | exon |
| TCONS_00036176-exon-sc0001421-1575043694:56164..58101 | TCONS_00036176-exon-sc0001421-1575043694:56164..58101 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001421 | supercontig | sc0001421:54617..58101 + |
Blast
The following BLAST results are available for this feature:
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