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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036156 ID=TCONS_00036156|Name=TCONS_00036156|organism=Clytia hemisphaerica|type=transcript|length=1440bp
GTTGAAAATAGAGAATTGTGAGCAGTTGTATCATCAGAAGTCAGATTGAT
CAAGTTAAAGATGGAAGGAGCAAAGGGCTTAAACCATGTTGAAAGAAANG
ATTTGTGAGCAGCTGTATCATCAGATGGTCAGTCAGACTGGTCAAGATGG
AAGGAGAAAAGGGCTTAAACCATTGTGAAAGAAGCAACAATATTGGTCGT
AATGAAGCACATTGTGCAGTTGAACAGGACCAGGTGAAACAGAAATCACC
AACAGATACGGTCAACGAGCTGTTAAAGGAAACAGAACACTTCAGACatg
aaaataaagttttaagACAAGAGAATGTTAAACTGGCTCAAGAAAAAGAG
GAATTGAGATGTGAGAATATGAGATTGAAAGCATCAATTGCTGGAATAAA
CATCGCACAGGAAAGTAATCCGTCTTCAAACTTGGTCCCTACGGAAAATC
GTATCAAGGAAGGTGTTGTGAAATTCTTGAACAATGAAATCACGACATTA
AATTTGTATAAGAACTACCAAGAATGGTATGCAGATATTTCTAACCGAGT
GAAAAGTGATATACCTCTTATATATTCTGAATTCATAGTTGTCAAGCATA
GTTCTGAGGAAAAAAACACTAACGGAGCAAATTTTGCATACAACATAAAA
ACCTCAGGTTCTACCTTTTTTGTCAGAAAGAATGGTGATTTCTGGCTTCA
CAAAGAAGGCAAATTATTTATTCTACATCCCAAAGAGCCCCTACAAGCCA
TGGGAATGACCAAAACAAGGTCTGATGAGGAGAATGAATGCCATGAATGG
AAATCTTCTTTACCTGATGGGCTTTATAGAGAGGAGGGAGATGCGAAAAT
ATACTCTATGCTTGCAATTGGAACAAAGAAGGATGATGCACACAGTGCAA
AAAAGGAAAGTGATAAAGCATCAGAAgtagaaaatgaaaagaaatctaAA
TGGAAAAGATTTTCTGGGAAAGGAAAATAACATTTAAAAGAAAGAACCAT
TTGATAATTCAATATGTCATTCCATGTGATTTCATTCTCATAGAGCAGTA
CTGAACTGTTTTctatttaaaatatctttaataTATAATACATTGAATGA
AAAATCTTGTAGCATTTATTTCTAATGTGCCTATTAACCTTTTAATTTTG
TACCGATGTTAAATTTCACGCACTTCTTAAAATATCATGTTCATGTTCAT
TGCAACTTTTAATTTACACATCATGCTTTATATTTTCTGGGATATTTTTg
cgtttttgatggaaaatataAGCTTATTGGCTGATTTAGCAAAAATATGG
CTgaaacatttcatttttttacatgCTAAAAAGGATACCAAAAATTAATT
AGGGACTAaaatgcccgggggggggtactagggcaaaatgggttacaggg
atgctccgctggtcagggtaccttttttaacctccacgag Run BLAST on NCBI protein sequence of TCONS_00036156-protein >TCONS_00036156-protein ID=TCONS_00036156-protein|Name=TCONS_00036156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MEGEKGLNHCERSNNIGRNEAHCAVEQDQVKQKSPTDTVNELLKETEHFR
HENKVLRQENVKLAQEKEELRCENMRLKASIAGINIAQESNPSSNLVPTE
NRIKEGVVKFLNNEITTLNLYKNYQEWYADISNRVKSDIPLIYSEFIVVK
HSSEEKNTNGANFAYNIKTSGSTFFVRKNGDFWLHKEGKLFILHPKEPLQ
AMGMTKTRSDEENECHEWKSSLPDGLYREEGDAKIYSMLAIGTKKDDAHS
AKKESDKASEVENEKKSKWKRFSGKGK Run BLAST on NCBI transcript from alignment at sc0001418:53392..54831 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036156 ID=TCONS_00036156|Name=TCONS_00036156|organism=Clytia hemisphaerica|type=transcript|length=1440bp|location=Sequence derived from alignment at sc0001418:53392..54831 (Clytia hemisphaerica)
ctcgtggaggttaaaaaaggtaccctgaccagcggagcatccctgtaacc
cattttgccctagtacccccccccgggcatttTAGTCCCTAATTAATTTT
TGGTATCCTTTTTAGcatgtaaaaaaatgaaatgtttcAGCCATATTTTT
GCTAAATCAGCCAATAAGCTtatattttccatcaaaaacgcAAAAATATC
CCAGAAAATATAAAGCATGATGTGTAAATTAAAAGTTGCAATGAACATGA
ACATGATATTTTAAGAAGTGCGTGAAATTTAACATCGGTACAAAATTAAA
AGGTTAATAGGCACATTAGAAATAAATGCTACAAGATTTTTCATTCAATG
TATTATAtattaaagatattttaaatagAAAACAGTTCAGTACTGCTCTA
TGAGAATGAAATCACATGGAATGACATATTGAATTATCAAATGGTTCTTT
CTTTTAAATGTTATTTTCCTTTCCCAGAAAATCTTTTCCATTtagatttc
ttttcattttctacTTCTGATGCTTTATCACTTTCCTTTTTTGCACTGTG
TGCATCATCCTTCTTTGTTCCAATTGCAAGCATAGAGTATATTTTCGCAT
CTCCCTCCTCTCTATAAAGCCCATCAGGTAAAGAAGATTTCCATTCATGG
CATTCATTCTCCTCATCAGACCTTGTTTTGGTCATTCCCATGGCTTGTAG
GGGCTCTTTGGGATGTAGAATAAATAATTTGCCTTCTTTGTGAAGCCAGA
AATCACCATTCTTTCTGACAAAAAAGGTAGAACCTGAGGTTTTTATGTTG
TATGCAAAATTTGCTCCGTTAGTGTTTTTTTCCTCAGAACTATGCTTGAC
AACTATGAATTCAGAATATATAAGAGGTATATCACTTTTCACTCGGTTAG
AAATATCTGCATACCATTCTTGGTAGTTCTTATACAAATTTAATGTCGTG
ATTTCATTGTTCAAGAATTTCACAACACCTTCCTTGATACGATTTTCCGT
AGGGACCAAGTTTGAAGACGGATTACTTTCCTGTGCGATGTTTATTCCAG
CAATTGATGCTTTCAATCTCATATTCTCACATCTCAATTCCTCTTTTTCT
TGAGCCAGTTTAACATTCTCTTGTcttaaaactttattttcatGTCTGAA
GTGTTCTGTTTCCTTTAACAGCTCGTTGACCGTATCTGTTGGTGATTTCT
GTTTCACCTGGTCCTGTTCAACTGCACAATGTGCTTCATTACGACCAATA
TTGTTGCTTCTTTCACAATGGTTTAAGCCCTTTTCTCCTTCCATCTTGAC
CAGTCTGACTGACCATCTGATGATACAGCTGCTCACAAATCNTTTCTTTC
AACATGGTTTAAGCCCTTTGCTCCTTCCATCTTTAACTTGATCAATCTGA
CTTCTGATGATACAACTGCTCACAATTCTCTATTTTCAAC Coding sequence (CDS) from alignment at sc0001418:53392..54831 >TCONS_00036156 ID=TCONS_00036156|Name=TCONS_00036156|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0001418:53392..54831 (Clytia hemisphaerica)
TTATTTTCCTTTCCCAGAAAATCTTTTCCATTtagatttcttttcatttt
ctacTTCTGATGCTTTATCACTTTCCTTTTTTGCACTGTGTGCATCATCC
TTCTTTGTTCCAATTGCAAGCATAGAGTATATTTTCGCATCTCCCTCCTC
TCTATAAAGCCCATCAGGTAAAGAAGATTTCCATTCATGGCATTCATTCT
CCTCATCAGACCTTGTTTTGGTCATTCCCATGGCTTGTAGGGGCTCTTTG
GGATGTAGAATAAATAATTTGCCTTCTTTGTGAAGCCAGAAATCACCATT
CTTTCTGACAAAAAAGGTAGAACCTGAGGTTTTTATGTTGTATGCAAAAT
TTGCTCCGTTAGTGTTTTTTTCCTCAGAACTATGCTTGACAACTATGAAT
TCAGAATATATAAGAGGTATATCACTTTTCACTCGGTTAGAAATATCTGC
ATACCATTCTTGGTAGTTCTTATACAAATTTAATGTCGTGATTTCATTGT
TCAAGAATTTCACAACACCTTCCTTGATACGATTTTCCGTAGGGACCAAG
TTTGAAGACGGATTACTTTCCTGTGCGATGTTTATTCCAGCAATTGATGC
TTTCAATCTCATATTCTCACATCTCAATTCCTCTTTTTCTTGAGCCAGTT
TAACATTCTCTTGTcttaaaactttattttcatGTCTGAAGTGTTCTGTT
TCCTTTAACAGCTCGTTGACCGTATCTGTTGGTGATTTCTGTTTCACCTG
GTCCTGTTCAACTGCACAATGTGCTTCATTACGACCAATATTGTTGCTTC
TTTCACAATGGTTTAAGCCCTTTTCTCCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036156-exon-sc0001418-1491911889:53392..54831 | TCONS_00036156-exon-sc0001418-1491911889:53392..54831 | Clytia hemisphaerica | exon |
| TCONS_00036156-exon-sc0001418-1510915933:53392..54831 | TCONS_00036156-exon-sc0001418-1510915933:53392..54831 | Clytia hemisphaerica | exon |
| TCONS_00036156-exon-sc0001418-1575043694:53392..54831 | TCONS_00036156-exon-sc0001418-1575043694:53392..54831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001418 | supercontig | sc0001418:53392..54831 . |
Blast
The following BLAST results are available for this feature:
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